Wall clock time and date at job start Tue Mar 31 2020 08:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46112 * 2 1 4 4 C 1.53037 * 109.44846 * 119.96289 * 2 1 3 5 5 C 1.53191 * 109.31405 * 181.37867 * 4 2 1 6 6 N 1.46926 * 108.77613 * 305.36628 * 5 4 2 7 7 C 1.34777 * 120.63227 * 233.62947 * 6 5 4 8 8 O 1.21548 * 120.00211 * 174.36697 * 7 6 5 9 9 C 1.47842 * 119.99991 * 354.36465 * 7 6 5 10 10 C 1.39578 * 120.14451 * 324.41964 * 9 7 6 11 11 C 1.37960 * 119.85404 * 179.74413 * 10 9 7 12 12 C 1.38359 * 120.14380 * 0.53550 * 11 10 9 13 13 C 1.38370 * 120.29142 * 359.73606 * 12 11 10 14 14 C 1.37963 * 120.14349 * 359.97438 * 13 12 11 15 15 C 1.46925 * 118.73767 * 53.60877 * 6 5 4 16 16 C 1.53042 * 109.46118 * 240.02522 * 2 1 3 17 17 H 1.08997 * 109.49759 * 298.57981 * 16 2 1 18 18 C 1.53005 * 109.49427 * 58.64703 * 16 2 1 19 19 N 1.46503 * 109.46656 * 185.00002 * 18 16 2 20 20 C 1.36933 * 119.99830 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00468 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00128 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47191 * 59.99784 * 24 22 20 26 26 H 1.48500 * 109.47368 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46759 * 299.99963 * 24 22 20 28 28 H 1.08992 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47020 * 300.00234 * 1 2 3 30 30 H 1.09002 * 109.47034 * 60.00263 * 1 2 3 31 31 H 1.08994 * 109.49914 * 301.32933 * 4 2 1 32 32 H 1.08999 * 109.49828 * 61.43047 * 4 2 1 33 33 H 1.08998 * 109.58807 * 185.57706 * 5 4 2 34 34 H 1.09005 * 109.70714 * 65.22368 * 5 4 2 35 35 H 1.07999 * 120.07392 * 0.02562 * 10 9 7 36 36 H 1.08000 * 119.93071 * 180.26996 * 11 10 9 37 37 H 1.08000 * 119.85663 * 179.72144 * 12 11 10 38 38 H 1.07994 * 119.92297 * 179.97438 * 13 12 11 39 39 H 1.07994 * 120.06636 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.58990 * 186.60687 * 15 6 5 41 41 H 1.09000 * 109.58919 * 66.17775 * 15 6 5 42 42 H 1.08996 * 109.47092 * 304.99554 * 18 16 2 43 43 H 1.08995 * 109.47465 * 64.99874 * 18 16 2 44 44 H 0.97005 * 120.00260 * 359.97438 * 19 18 16 45 45 H 0.96999 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0395 -0.7207 1.2502 5 6 3.5710 -0.6889 1.2646 6 7 4.0676 -1.2493 0.0004 7 6 4.9610 -2.2585 0.0006 8 8 5.2868 -2.7819 -1.0469 9 6 5.5448 -2.7287 1.2749 10 6 5.8173 -1.8199 2.2986 11 6 6.3572 -2.2660 3.4872 12 6 6.6387 -3.6094 3.6616 13 6 6.3762 -4.5147 2.6487 14 6 5.8309 -4.0825 1.4573 15 6 3.5714 -0.6890 -1.2639 16 6 2.0399 -0.7209 -1.2500 17 1 1.6976 -1.7557 -1.2382 18 6 1.5024 -0.0194 -2.4990 19 7 1.8914 -0.7779 -3.6905 20 6 1.5196 -0.3389 -4.9331 21 1 0.9400 0.5667 -5.0349 22 6 1.8877 -1.0578 -6.0621 23 7 2.5945 -2.1612 -5.9381 24 14 1.3811 -0.4586 -7.7573 25 1 1.9462 0.8942 -7.9935 26 1 1.8953 -1.3961 -8.7879 27 1 -0.1004 -0.3973 -7.8383 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6569 -0.2206 2.1398 32 1 1.6973 -1.7555 1.2384 33 1 3.9411 -1.2848 2.0988 34 1 3.9163 0.3398 1.3688 35 1 5.6018 -0.7705 2.1622 36 1 6.5645 -1.5645 4.2818 37 1 7.0655 -3.9529 4.5924 38 1 6.5987 -5.5619 2.7910 39 1 5.6261 -4.7903 0.6677 40 1 3.9416 -1.2851 -2.0981 41 1 3.9145 0.3404 -1.3671 42 1 0.4154 0.0382 -2.4439 43 1 1.9171 0.9869 -2.5574 44 1 2.4124 -1.5911 -3.5992 45 1 2.8515 -2.6638 -6.7270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132599824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:31 Heat of formation + Delta-G solvation = -18.111945 kcal Electronic energy + Delta-G solvation = -24865.216799 eV Core-core repulsion = 21460.767967 eV Total energy + Delta-G solvation = -3404.448832 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75276 -39.82337 -38.84779 -36.67942 -35.19130 -33.57081 -32.45962 -31.93392 -31.22117 -29.26803 -27.36960 -25.42228 -24.98067 -23.55485 -23.36538 -22.59052 -21.31652 -20.40743 -19.16660 -18.34352 -17.61145 -17.09904 -16.76249 -16.51694 -15.73996 -15.67536 -15.55513 -15.47895 -15.10112 -14.84849 -14.48776 -14.40912 -14.26555 -14.09788 -14.03963 -13.56605 -13.06682 -13.03451 -12.78091 -12.70889 -12.60308 -12.52644 -12.22786 -12.03559 -12.03351 -11.91323 -11.76264 -11.36429 -11.20790 -10.97545 -10.85294 -9.98063 -9.85213 -9.64180 -9.01543 -7.95282 -5.26223 -0.05630 0.40555 1.43467 1.48298 1.54566 1.68156 1.93386 2.54419 2.82750 3.37151 3.41792 3.65817 3.78224 3.84371 3.93207 4.00485 4.05166 4.17288 4.24654 4.26449 4.38811 4.49262 4.51878 4.53666 4.58323 4.72908 4.77830 4.81454 4.84743 4.93562 4.95140 5.05912 5.07221 5.11253 5.21838 5.25254 5.37191 5.42727 5.44986 5.46761 5.52085 5.52758 5.56526 5.97101 6.24685 6.35233 7.06048 7.29818 8.06698 8.28952 9.28099 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.003622 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.332245 B = 7728.793552 C = 8918.289775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 H 0.089 0.911 4 C -0.123 4.123 5 C 0.087 3.913 6 N -0.600 5.600 7 C 0.541 3.459 8 O -0.593 6.593 9 C -0.148 4.148 10 C -0.092 4.092 11 C -0.120 4.120 12 C -0.091 4.091 13 C -0.127 4.127 14 C -0.092 4.092 15 C 0.126 3.874 16 C -0.088 4.088 17 H 0.044 0.956 18 C 0.157 3.843 19 N -0.749 5.749 20 C -0.247 4.247 21 H 0.080 0.920 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.979 3.021 25 H -0.275 1.275 26 H -0.297 1.297 27 H -0.274 1.274 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.151 0.849 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.026 0.974 44 H 0.369 0.631 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 3.605 28.943 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.034 4.034 6 N -0.331 5.331 7 C 0.332 3.668 8 O -0.475 6.475 9 C -0.151 4.151 10 C -0.110 4.110 11 C -0.137 4.137 12 C -0.109 4.109 13 C -0.145 4.145 14 C -0.111 4.111 15 C 0.003 3.997 16 C -0.108 4.108 17 H 0.063 0.937 18 C 0.031 3.969 19 N -0.392 5.392 20 C -0.379 4.379 21 H 0.098 0.902 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.807 3.193 25 H -0.201 1.201 26 H -0.224 1.224 27 H -0.200 1.200 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.117 0.883 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.179 0.821 38 H 0.166 0.834 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.147 3.485 28.289 28.803 hybrid contribution -0.037 -0.638 -2.076 2.172 sum 4.110 2.848 26.213 26.685 Atomic orbital electron populations 1.21855 0.94263 1.01560 1.02539 1.21102 0.96489 0.99743 0.92372 0.89309 1.21998 0.94369 1.00985 0.98695 1.22638 0.95093 1.00791 0.84850 1.48146 1.41909 1.34526 1.08499 1.19185 0.79120 0.79079 0.89435 1.90810 1.63190 1.57958 1.35529 1.19823 1.05514 0.95896 0.93835 1.21720 0.97036 0.99961 0.92303 1.21561 0.98011 0.96820 0.97321 1.21817 0.96462 0.93180 0.99465 1.21408 0.98920 1.01705 0.92447 1.21293 0.97279 0.94188 0.98371 1.21440 0.94285 0.98357 0.85602 1.21562 0.93780 0.99353 0.96069 0.93708 1.20925 0.97201 0.93892 0.84887 1.42698 1.65217 1.29148 1.02117 1.19651 1.26975 1.06240 0.84986 0.90170 1.25697 1.01571 0.97934 1.02091 1.69878 1.44371 1.18913 1.29249 0.85136 0.78016 0.77160 0.78983 1.20084 1.22376 1.19999 0.93867 0.89955 0.93127 0.86646 0.92975 0.86789 0.88326 0.83132 0.81647 0.82122 0.83421 0.87502 0.93341 0.90497 0.94795 0.95632 0.79981 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.81 71.98 0.63 -2.51 16 2 C -0.08 -1.79 2.23 -10.77 -0.02 -1.82 16 3 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 4 C -0.12 -2.16 5.36 30.67 0.16 -2.00 16 5 C 0.09 1.57 4.78 86.36 0.41 1.98 16 6 N -0.60 -18.12 2.97 -822.31 -2.44 -20.57 16 7 C 0.54 19.29 7.38 86.79 0.64 19.93 16 8 O -0.59 -28.40 16.25 -3.87 -0.06 -28.46 16 9 C -0.15 -3.87 5.29 -20.09 -0.11 -3.98 16 10 C -0.09 -1.55 7.36 22.53 0.17 -1.38 16 11 C -0.12 -1.33 10.03 22.23 0.22 -1.11 16 12 C -0.09 -1.04 10.04 22.33 0.22 -0.81 16 13 C -0.13 -2.10 10.03 22.24 0.22 -1.88 16 14 C -0.09 -2.31 9.61 22.53 0.22 -2.10 16 15 C 0.13 4.64 5.53 86.36 0.48 5.12 16 16 C -0.09 -3.03 1.92 -10.71 -0.02 -3.06 16 17 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 18 C 0.16 6.55 5.41 86.38 0.47 7.02 16 19 N -0.75 -41.27 5.38 -343.45 -1.85 -43.12 16 20 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 21 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 22 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 23 N -0.97 -64.60 13.06 21.65 0.28 -64.32 16 24 Si 0.98 48.55 29.55 68.60 2.03 50.58 16 25 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 27 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.24 6.29 -2.39 -0.02 1.23 16 31 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.67 4.46 -2.39 -0.01 1.66 16 34 H 0.10 1.28 8.05 -2.38 -0.02 1.26 16 35 H 0.15 1.94 6.06 -2.91 -0.02 1.92 16 36 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.11 3.10 8.01 -2.91 -0.02 3.07 16 40 H 0.05 2.35 6.21 -2.39 -0.01 2.33 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.03 1.39 6.14 -2.39 -0.01 1.37 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.37 22.48 6.90 -92.70 -0.64 21.84 16 45 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -83.58 355.37 3.31 -80.27 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.35 Total: 30.45 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.01 Total: -4.83 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -4.01 Total: -128.01 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.06 Total: -28.46 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -83.58 3.31 -80.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132599824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.157 kcal (2) G-P(sol) polarization free energy of solvation -83.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds