Wall clock time and date at job start Tue Mar 31 2020 08:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47605 * 2 1 4 4 N 1.46902 * 109.47015 * 239.99768 * 2 1 3 5 5 C 1.53008 * 109.47157 * 120.00030 * 2 1 3 6 6 H 1.08995 * 109.52143 * 304.92152 * 5 2 1 7 7 C 1.53033 * 109.49617 * 184.83636 * 5 2 1 8 8 C 1.53049 * 109.53523 * 178.68438 * 7 5 2 9 9 C 1.52761 * 109.38379 * 61.24295 * 8 7 5 10 10 N 1.46933 * 109.00460 * 305.58848 * 9 8 7 11 11 C 1.34777 * 120.62680 * 233.58104 * 10 9 8 12 12 O 1.21551 * 119.99680 * 183.01386 * 11 10 9 13 13 C 1.47883 * 120.00048 * 3.01706 * 11 10 9 14 14 C 1.39922 * 120.02338 * 135.13620 * 13 11 10 15 15 C 1.38334 * 120.35865 * 179.97438 * 14 13 11 16 16 C 1.37752 * 120.40728 * 0.25954 * 15 14 13 17 17 C 1.40747 * 120.04445 * 359.49187 * 16 15 14 18 18 C 1.41431 * 120.18157 * 180.27747 * 17 16 15 19 19 H 1.08001 * 120.00269 * 151.67471 * 18 17 16 20 20 C 1.39944 * 119.99957 * 331.67424 * 18 17 16 21 21 N 1.30821 * 120.00047 * 163.63923 * 20 18 17 22 22 Si 1.86805 * 119.99710 * 343.63387 * 20 18 17 23 23 H 1.48507 * 109.46629 * 94.21224 * 22 20 18 24 24 H 1.48492 * 109.47065 * 214.21088 * 22 20 18 25 25 H 1.48496 * 109.47183 * 334.21937 * 22 20 18 26 26 C 1.38995 * 120.02711 * 315.11600 * 13 11 10 27 27 C 1.46920 * 118.73901 * 53.31133 * 10 9 8 28 28 H 1.09003 * 109.46991 * 299.99815 * 1 2 3 29 29 H 1.09002 * 109.47396 * 59.99951 * 1 2 3 30 30 H 1.09000 * 109.47605 * 180.02562 * 1 2 3 31 31 H 1.00901 * 110.99671 * 60.00450 * 4 2 1 32 32 H 1.00906 * 110.99903 * 183.95187 * 4 2 1 33 33 H 1.09005 * 109.46336 * 298.70040 * 7 5 2 34 34 H 1.08999 * 109.46392 * 58.68315 * 7 5 2 35 35 H 1.09000 * 109.49817 * 181.31757 * 8 7 5 36 36 H 1.08993 * 109.49769 * 301.38061 * 8 7 5 37 37 H 1.08993 * 109.51018 * 185.70740 * 9 8 7 38 38 H 1.08997 * 109.43212 * 65.41673 * 9 8 7 39 39 H 1.08001 * 119.82289 * 0.02562 * 14 13 11 40 40 H 1.07999 * 119.79496 * 179.97438 * 15 14 13 41 41 H 1.08004 * 119.97488 * 179.74759 * 16 15 14 42 42 H 0.97001 * 119.99979 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.20159 * 0.02562 * 26 13 11 44 44 H 1.09001 * 109.58922 * 66.43083 * 27 10 9 45 45 H 1.09004 * 109.58437 * 186.85431 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0400 -0.7213 1.2493 6 1 1.6069 -0.2615 2.1376 7 6 3.5655 -0.6171 1.3122 8 6 4.0740 -1.3101 2.5785 9 6 3.6913 -2.7884 2.5361 10 7 2.2414 -2.9014 2.3266 11 6 1.4814 -3.6326 3.1659 12 8 0.2922 -3.7633 2.9509 13 6 2.0942 -4.2756 4.3481 14 6 1.4590 -4.2028 5.5927 15 6 2.0259 -4.8023 6.7031 16 6 3.2244 -5.4730 6.5978 17 6 3.8755 -5.5613 5.3531 18 6 5.1032 -6.2543 5.2404 19 1 5.3771 -6.7193 4.3048 20 6 5.9633 -6.3376 6.3412 21 7 6.9255 -7.2239 6.3540 22 14 5.7375 -5.1830 7.7923 23 1 4.8994 -5.8439 8.8248 24 1 7.0639 -4.8494 8.3704 25 1 5.0694 -3.9381 7.3350 26 6 3.3015 -4.9532 4.2238 27 6 1.6350 -2.1975 1.1885 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6961 -0.2350 -2.0385 32 1 3.0262 -0.7626 -1.1909 33 1 3.9988 -1.0990 0.4357 34 1 3.8574 0.4329 1.3310 35 1 5.1584 -1.2153 2.6346 36 1 3.6223 -0.8444 3.4544 37 1 3.9622 -3.2617 3.4797 38 1 4.2180 -3.2759 1.7157 39 1 0.5207 -3.6765 5.6869 40 1 1.5279 -4.7400 7.6595 41 1 3.6627 -5.9350 7.4701 42 1 7.5218 -7.2813 7.1169 43 1 3.7953 -5.0118 3.2652 44 1 1.9907 -2.6359 0.2561 45 1 0.5496 -2.2812 1.2434 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568149607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:17 Heat of formation + Delta-G solvation = -22.784609 kcal Electronic energy + Delta-G solvation = -25187.799703 eV Core-core repulsion = 21783.148249 eV Total energy + Delta-G solvation = -3404.651454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16422 -38.29723 -37.16537 -35.54831 -33.68163 -32.31240 -31.04444 -30.56537 -29.76174 -28.72542 -25.57895 -25.21869 -23.97801 -22.52520 -21.20774 -20.78846 -19.68860 -18.97794 -17.49991 -16.35821 -16.09445 -16.05368 -15.78398 -15.05003 -14.80054 -14.65650 -14.38057 -14.11758 -13.67744 -13.47505 -13.14848 -12.99943 -12.81179 -12.51087 -12.42129 -12.23275 -12.09576 -12.02310 -11.69033 -11.42437 -11.13248 -11.03090 -10.90857 -10.78362 -10.63223 -10.43404 -10.25884 -9.93422 -9.73894 -9.40171 -9.06542 -8.92651 -8.25484 -7.80134 -7.74619 -7.02994 -4.59366 2.07294 2.50002 3.03867 3.14908 3.22445 3.32399 3.52638 3.89361 4.28664 4.41129 4.55254 4.67461 4.84606 5.07000 5.11394 5.17606 5.28033 5.33921 5.36808 5.51591 5.60572 5.69163 5.71802 5.78893 5.91901 5.93900 5.97829 6.02968 6.14160 6.16796 6.21833 6.24772 6.34056 6.40737 6.55841 6.71452 6.88324 6.93293 6.97733 7.20626 7.22735 7.40882 7.50233 7.70790 7.84359 7.90381 8.23880 8.49083 8.68495 8.70153 9.99157 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.003999 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.607170 B = 6999.317453 C = 7583.441096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.096 3.904 3 H 0.035 0.965 4 N -0.844 5.844 5 C -0.097 4.097 6 H 0.075 0.925 7 C -0.116 4.116 8 C -0.134 4.134 9 C 0.087 3.913 10 N -0.610 5.610 11 C 0.567 3.433 12 O -0.553 6.553 13 C -0.094 4.094 14 C -0.193 4.193 15 C -0.082 4.082 16 C -0.223 4.223 17 C 0.087 3.913 18 C -0.445 4.445 19 H 0.092 0.908 20 C 0.084 3.916 21 N -0.806 5.806 22 Si 0.912 3.088 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.243 1.243 26 C -0.182 4.182 27 C 0.125 3.875 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.339 0.661 32 H 0.341 0.659 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.286 0.714 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.347 14.198 -8.863 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 H 0.053 0.947 4 N -0.376 5.376 5 C -0.117 4.117 6 H 0.093 0.907 7 C -0.153 4.153 8 C -0.172 4.172 9 C -0.036 4.036 10 N -0.343 5.343 11 C 0.358 3.642 12 O -0.431 6.431 13 C -0.097 4.097 14 C -0.213 4.213 15 C -0.100 4.100 16 C -0.242 4.242 17 C 0.084 3.916 18 C -0.473 4.473 19 H 0.110 0.890 20 C -0.136 4.136 21 N -0.430 5.430 22 Si 0.739 3.261 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.166 1.166 26 C -0.202 4.202 27 C 0.003 3.997 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.147 13.344 -8.641 16.429 hybrid contribution 0.656 1.296 0.484 1.531 sum -3.491 14.640 -8.157 17.119 Atomic orbital electron populations 1.21876 0.94416 1.03083 1.01352 1.21281 0.95526 0.94527 0.90248 0.94731 1.58770 1.16371 1.58481 1.03983 1.21603 0.95987 0.96795 0.97268 0.90679 1.21613 0.94984 1.00167 0.98585 1.21840 1.01190 0.96208 0.97990 1.22228 0.80068 0.96426 1.04836 1.48036 1.08312 1.49638 1.28277 1.18875 0.85723 0.77407 0.82201 1.90679 1.15721 1.61900 1.74834 1.19417 0.96121 1.01509 0.92630 1.20318 1.00939 1.08233 0.91803 1.20547 0.95497 0.97066 0.96870 1.21178 0.97414 1.07472 0.98133 1.17636 0.93236 0.89832 0.90893 1.19488 1.00544 1.27909 0.99357 0.88970 1.26162 0.93954 0.94298 0.99151 1.69673 1.14404 1.27723 1.31167 0.86322 0.76817 0.82697 0.80261 1.19652 1.21908 1.16618 1.21245 0.96054 1.03784 0.99107 1.21508 0.99571 0.90006 0.88658 0.92221 0.92969 0.91250 0.84895 0.84499 0.91654 0.92333 0.90642 0.91578 0.86369 0.91652 0.88115 0.88160 0.87934 0.90321 0.87075 0.90376 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.25 37.15 0.34 -1.05 16 2 C 0.10 0.87 3.13 -67.71 -0.21 0.66 16 3 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 4 N -0.84 -6.92 8.18 -4.66 -0.04 -6.96 16 5 C -0.10 -1.08 2.16 -90.50 -0.20 -1.28 16 6 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 7 C -0.12 -1.17 4.91 -26.69 -0.13 -1.30 16 8 C -0.13 -1.62 6.06 -26.83 -0.16 -1.78 16 9 C 0.09 1.29 5.12 -3.93 -0.02 1.27 16 10 N -0.61 -10.18 2.98 -174.13 -0.52 -10.69 16 11 C 0.57 11.65 7.30 -12.31 -0.09 11.56 16 12 O -0.55 -12.70 16.41 5.32 0.09 -12.62 16 13 C -0.09 -2.03 5.19 -105.04 -0.54 -2.58 16 14 C -0.19 -4.16 9.69 -38.92 -0.38 -4.54 16 15 C -0.08 -1.74 10.01 -39.72 -0.40 -2.14 16 16 C -0.22 -5.18 7.09 -38.81 -0.28 -5.46 16 17 C 0.09 2.10 5.16 -106.87 -0.55 1.55 16 18 C -0.44 -11.40 9.59 -37.73 -0.36 -11.76 16 19 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 20 C 0.08 2.09 5.44 -17.34 -0.09 2.00 16 21 N -0.81 -20.65 13.93 55.55 0.77 -19.88 16 22 Si 0.91 19.82 24.42 -169.99 -4.15 15.67 16 23 H -0.27 -5.75 6.66 56.52 0.38 -5.37 16 24 H -0.29 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.24 -5.33 6.75 56.52 0.38 -4.95 16 26 C -0.18 -4.03 7.06 -38.44 -0.27 -4.30 16 27 C 0.12 1.77 5.19 -3.71 -0.02 1.75 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.76 6.70 -51.93 -0.35 0.41 16 31 H 0.34 2.22 9.04 -39.29 -0.36 1.87 16 32 H 0.34 2.55 7.27 -39.29 -0.29 2.26 16 33 H 0.06 0.61 6.73 -51.93 -0.35 0.26 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.12 2.04 4.26 -51.93 -0.22 1.82 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.10 2.37 4.34 -52.48 -0.23 2.14 16 42 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.11 2.30 6.53 -52.49 -0.34 1.95 16 44 H 0.08 1.09 7.31 -51.93 -0.38 0.71 16 45 H 0.09 1.39 5.74 -51.93 -0.30 1.09 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -28.25 344.28 -8.66 -36.91 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.64 Total: 9.78 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -3.36 Total: -17.39 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.22 Total: -37.54 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.15 Total: 15.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.25 -8.66 -36.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568149607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.121 kcal (2) G-P(sol) polarization free energy of solvation -28.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds