Wall clock time and date at job start Tue Mar 31 2020 08:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47357 * 2 1 4 4 C 1.48554 * 110.99853 * 290.12219 * 3 2 1 5 5 C 1.54376 * 104.59530 * 200.96026 * 4 3 2 6 6 C 1.54257 * 105.06304 * 23.85581 * 5 4 3 7 7 H 1.09000 * 110.32418 * 241.00481 * 6 5 4 8 8 C 1.53001 * 110.32809 * 118.89435 * 6 5 4 9 9 N 1.46503 * 109.46843 * 66.45618 * 8 6 5 10 10 C 1.34774 * 119.99479 * 179.97438 * 9 8 6 11 11 O 1.21602 * 120.00345 * 0.02562 * 10 9 8 12 12 C 1.47438 * 119.99397 * 179.97438 * 10 9 8 13 13 C 1.39221 * 120.28580 * 5.54350 * 12 10 9 14 14 C 1.38221 * 120.09231 * 179.97438 * 13 12 10 15 15 C 1.38816 * 120.67719 * 359.97438 * 14 13 12 16 16 C 1.37605 * 120.57154 * 0.02562 * 15 14 13 17 17 C 1.40698 * 119.87871 * 359.97438 * 16 15 14 18 18 C 1.40898 * 120.32802 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00056 * 213.40323 * 18 17 16 20 20 C 1.40269 * 119.99570 * 33.40459 * 18 17 16 21 21 N 1.30634 * 120.00361 * 8.71802 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 188.71949 * 20 18 17 23 23 H 1.48497 * 109.47183 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47277 * 119.99939 * 22 20 18 25 25 H 1.48501 * 109.47370 * 240.00020 * 22 20 18 26 26 C 1.48562 * 111.00048 * 174.70519 * 3 2 1 27 27 H 1.08998 * 109.47094 * 300.00788 * 1 2 3 28 28 H 1.09008 * 109.46816 * 60.00021 * 1 2 3 29 29 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47094 * 239.99212 * 2 1 3 31 31 H 1.09008 * 109.46816 * 119.99978 * 2 1 3 32 32 H 1.09001 * 110.41278 * 82.18625 * 4 3 2 33 33 H 1.09001 * 110.41355 * 319.73631 * 4 3 2 34 34 H 1.09006 * 110.32611 * 264.95470 * 5 4 3 35 35 H 1.08999 * 110.32563 * 142.74883 * 5 4 3 36 36 H 1.08998 * 109.46960 * 306.45580 * 8 6 5 37 37 H 1.08993 * 109.46955 * 186.45565 * 8 6 5 38 38 H 0.96996 * 119.99657 * 0.02562 * 9 8 6 39 39 H 1.08000 * 119.95316 * 359.97438 * 13 12 10 40 40 H 1.08000 * 119.66091 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.71710 * 180.28327 * 15 14 13 42 42 H 1.07998 * 120.06098 * 179.97438 * 16 15 14 43 43 H 0.96996 * 119.99588 * 179.97438 * 21 20 18 44 44 H 1.09006 * 110.40964 * 40.26157 * 26 3 2 45 45 H 1.08998 * 110.41044 * 277.82227 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7474 2.0459 -1.3022 5 6 2.7455 3.2223 -1.3577 6 6 3.8980 2.8148 -0.4169 7 1 3.9915 3.5310 0.3995 8 6 5.2121 2.7229 -1.1950 9 7 5.5983 4.0573 -1.6604 10 6 6.7308 4.2209 -2.3726 11 8 7.4317 3.2609 -2.6293 12 6 7.1192 5.5637 -2.8415 13 6 6.3845 6.6817 -2.4560 14 6 6.7525 7.9387 -2.8975 15 6 7.8537 8.1040 -3.7263 16 6 8.5994 7.0182 -4.1243 17 6 8.2461 5.7277 -3.6890 18 6 9.0033 4.6093 -4.0902 19 1 8.5185 3.6571 -4.2470 20 6 10.3867 4.7328 -4.2860 21 7 11.0007 5.8312 -3.9352 22 14 11.3513 3.3265 -5.0484 23 1 10.4297 2.2032 -5.3553 24 1 11.9980 3.7919 -6.3017 25 1 12.3929 2.8665 -4.0952 26 6 3.4992 1.4265 0.1280 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 0.7224 2.4153 -1.3340 33 1 1.9289 1.3543 -2.1249 34 1 2.2721 4.1376 -1.0022 35 1 3.1160 3.3568 -2.3739 36 1 5.0812 2.0628 -2.0524 37 1 5.9918 2.3248 -0.5457 38 1 5.0394 4.8230 -1.4554 39 1 5.5259 6.5665 -1.8111 40 1 6.1773 8.8012 -2.5945 41 1 8.1300 9.0938 -4.0584 42 1 9.4543 7.1562 -4.7696 43 1 11.9574 5.9164 -4.0704 44 1 3.9549 0.6379 -0.4709 45 1 3.7933 1.3294 1.1731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601005607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:41 Heat of formation + Delta-G solvation = -20.226427 kcal Electronic energy + Delta-G solvation = -24228.534667 eV Core-core repulsion = 20823.994145 eV Total energy + Delta-G solvation = -3404.540523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.60614 -38.65971 -36.78690 -34.93550 -33.73741 -32.70279 -30.24422 -29.74540 -29.35328 -28.86544 -25.64927 -24.62980 -23.21686 -22.02995 -21.06827 -20.84935 -19.92328 -19.24685 -17.52605 -16.49652 -16.41473 -15.63579 -15.32038 -15.05893 -14.77161 -14.38412 -14.20882 -13.96581 -13.58075 -13.20424 -13.13203 -12.77583 -12.70464 -12.64732 -12.27067 -12.04745 -11.73213 -11.57189 -11.54117 -11.31977 -11.12616 -11.10744 -11.01610 -10.76089 -10.65243 -10.56023 -10.51185 -10.05133 -9.66178 -9.27676 -8.72016 -8.41795 -8.31526 -7.57197 -7.34905 -6.78695 -4.37704 2.37476 2.80991 3.10949 3.20615 3.22903 3.71064 3.97779 3.98857 4.18916 4.51572 4.59134 4.69458 4.76078 4.90961 5.00727 5.11293 5.23473 5.32623 5.44536 5.46739 5.58157 5.60853 5.65247 5.68916 5.74443 5.86944 5.88484 5.96346 6.00380 6.05031 6.20287 6.27636 6.31994 6.63152 6.64229 6.81384 6.97322 7.10215 7.17678 7.25211 7.47910 7.63974 7.90689 7.99904 8.19423 8.40580 8.68250 8.84139 8.91331 9.43144 10.16152 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.003281 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.060218 B = 8532.604324 C = 9730.944536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.038 3.962 3 N -0.512 5.512 4 C 0.033 3.967 5 C -0.123 4.123 6 C -0.103 4.103 7 H 0.085 0.915 8 C 0.134 3.866 9 N -0.748 5.748 10 C 0.564 3.436 11 O -0.539 6.539 12 C -0.262 4.262 13 C -0.057 4.057 14 C -0.246 4.246 15 C -0.096 4.096 16 C -0.149 4.149 17 C 0.144 3.856 18 C -0.415 4.415 19 H 0.106 0.894 20 C 0.068 3.932 21 N -0.793 5.793 22 Si 0.917 3.083 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.040 3.960 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.392 0.608 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.281 0.719 44 H 0.049 0.951 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.577 -6.264 5.501 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 N -0.237 5.237 4 C -0.095 4.095 5 C -0.161 4.161 6 C -0.122 4.122 7 H 0.104 0.896 8 C 0.009 3.991 9 N -0.403 5.403 10 C 0.358 3.642 11 O -0.418 6.418 12 C -0.267 4.267 13 C -0.076 4.076 14 C -0.266 4.266 15 C -0.115 4.115 16 C -0.168 4.168 17 C 0.140 3.860 18 C -0.443 4.443 19 H 0.124 0.876 20 C -0.150 4.150 21 N -0.419 5.419 22 Si 0.741 3.259 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.088 4.088 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.226 0.774 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.097 -6.638 5.770 16.616 hybrid contribution 0.643 -0.514 -0.683 1.069 sum -13.455 -7.152 5.087 16.064 Atomic orbital electron populations 1.21741 0.94759 1.01434 1.02471 1.22242 0.96357 0.89515 1.00926 1.65426 1.11398 1.15626 1.31226 1.23132 1.00047 0.96028 0.90319 1.22424 0.95229 0.98204 1.00289 1.22126 0.94417 0.97354 0.98296 0.89620 1.21162 0.94392 0.86042 0.97516 1.46001 1.26522 1.08857 1.58895 1.18431 0.79263 0.89725 0.76801 1.90670 1.51671 1.42257 1.57158 1.19450 1.06023 0.90762 1.10425 1.20639 0.96730 0.92914 0.97302 1.20280 1.02150 0.95611 1.08534 1.20804 0.95469 0.97298 0.97928 1.21382 1.00474 0.92195 1.02717 1.17501 0.88908 0.93031 0.86580 1.20238 0.91647 0.98163 1.34272 0.87626 1.26138 0.98845 0.96883 0.93125 1.69727 1.11208 1.26379 1.34545 0.86109 0.79345 0.81535 0.78914 1.18057 1.19905 1.19905 1.23069 0.87944 0.96370 1.01452 0.91889 0.92760 0.92420 0.94635 0.90795 0.90220 0.93808 0.90862 0.90486 0.92348 0.92130 0.77369 0.89294 0.89140 0.89114 0.86343 0.90794 0.93278 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.97 37.16 0.37 -0.72 16 2 C 0.04 0.33 5.53 -3.82 -0.02 0.31 16 3 N -0.51 -5.22 5.37 -229.97 -1.24 -6.45 16 4 C 0.03 0.32 5.74 -2.19 -0.01 0.31 16 5 C -0.12 -1.31 6.33 -25.35 -0.16 -1.47 16 6 C -0.10 -1.16 3.13 -89.24 -0.28 -1.44 16 7 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 8 C 0.13 1.98 4.76 -4.04 -0.02 1.96 16 9 N -0.75 -13.03 5.27 -61.38 -0.32 -13.35 16 10 C 0.56 13.02 7.72 -12.51 -0.10 12.92 16 11 O -0.54 -14.23 13.57 5.28 0.07 -14.16 16 12 C -0.26 -6.39 5.92 -104.36 -0.62 -7.00 16 13 C -0.06 -1.21 9.52 -39.22 -0.37 -1.58 16 14 C -0.25 -5.24 10.03 -39.37 -0.39 -5.63 16 15 C -0.10 -2.17 10.01 -39.60 -0.40 -2.57 16 16 C -0.15 -3.79 8.62 -38.88 -0.34 -4.12 16 17 C 0.14 3.88 5.52 -106.54 -0.59 3.29 16 18 C -0.41 -11.46 7.71 -37.81 -0.29 -11.75 16 19 H 0.11 3.03 5.86 -52.49 -0.31 2.72 16 20 C 0.07 1.76 5.27 -17.30 -0.09 1.67 16 21 N -0.79 -20.67 11.06 55.56 0.61 -20.06 16 22 Si 0.92 19.77 29.57 -169.99 -5.03 14.75 16 23 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C 0.04 0.42 6.03 -2.18 -0.01 0.40 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.41 7.26 -51.92 -0.38 0.03 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.31 7.88 -51.93 -0.41 -0.09 16 31 H 0.07 0.60 8.13 -51.92 -0.42 0.18 16 32 H 0.08 0.72 7.76 -51.93 -0.40 0.32 16 33 H 0.04 0.44 7.82 -51.93 -0.41 0.04 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.90 7.63 -51.93 -0.40 0.50 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.39 5.93 6.38 -40.82 -0.26 5.67 16 39 H 0.09 1.56 6.43 -52.49 -0.34 1.22 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 42 H 0.12 3.09 6.52 -52.49 -0.34 2.74 16 43 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 44 H 0.05 0.52 7.72 -51.93 -0.40 0.12 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -29.77 358.76 -10.82 -40.58 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.00 Total: 8.72 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -3.32 Total: -15.43 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.94 Total: -39.86 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.77 -10.82 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601005607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.355 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds