Wall clock time and date at job start Tue Mar 31 2020 08:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47357 * 2 1 4 4 C 1.48554 * 110.99853 * 290.12219 * 3 2 1 5 5 C 1.54376 * 104.59530 * 200.96026 * 4 3 2 6 6 C 1.54257 * 105.06304 * 23.85581 * 5 4 3 7 7 H 1.09000 * 110.32418 * 241.00481 * 6 5 4 8 8 C 1.53001 * 110.32809 * 118.89435 * 6 5 4 9 9 N 1.46503 * 109.46843 * 66.45618 * 8 6 5 10 10 C 1.34774 * 119.99479 * 179.97438 * 9 8 6 11 11 O 1.21602 * 120.00345 * 0.02562 * 10 9 8 12 12 C 1.47438 * 119.99397 * 179.97438 * 10 9 8 13 13 C 1.39221 * 120.28580 * 5.54350 * 12 10 9 14 14 C 1.38221 * 120.09231 * 179.97438 * 13 12 10 15 15 C 1.38816 * 120.67719 * 359.97438 * 14 13 12 16 16 C 1.37605 * 120.57154 * 0.02562 * 15 14 13 17 17 C 1.40698 * 119.87871 * 359.97438 * 16 15 14 18 18 C 1.40898 * 120.32802 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00056 * 213.40323 * 18 17 16 20 20 C 1.40269 * 119.99570 * 33.40459 * 18 17 16 21 21 N 1.30634 * 120.00361 * 8.71802 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 188.71949 * 20 18 17 23 23 H 1.48497 * 109.47183 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47277 * 119.99939 * 22 20 18 25 25 H 1.48501 * 109.47370 * 240.00020 * 22 20 18 26 26 C 1.48562 * 111.00048 * 174.70519 * 3 2 1 27 27 H 1.08998 * 109.47094 * 300.00788 * 1 2 3 28 28 H 1.09008 * 109.46816 * 60.00021 * 1 2 3 29 29 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47094 * 239.99212 * 2 1 3 31 31 H 1.09008 * 109.46816 * 119.99978 * 2 1 3 32 32 H 1.09001 * 110.41278 * 82.18625 * 4 3 2 33 33 H 1.09001 * 110.41355 * 319.73631 * 4 3 2 34 34 H 1.09006 * 110.32611 * 264.95470 * 5 4 3 35 35 H 1.08999 * 110.32563 * 142.74883 * 5 4 3 36 36 H 1.08998 * 109.46960 * 306.45580 * 8 6 5 37 37 H 1.08993 * 109.46955 * 186.45565 * 8 6 5 38 38 H 0.96996 * 119.99657 * 0.02562 * 9 8 6 39 39 H 1.08000 * 119.95316 * 359.97438 * 13 12 10 40 40 H 1.08000 * 119.66091 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.71710 * 180.28327 * 15 14 13 42 42 H 1.07998 * 120.06098 * 179.97438 * 16 15 14 43 43 H 0.96996 * 119.99588 * 179.97438 * 21 20 18 44 44 H 1.09006 * 110.40964 * 40.26157 * 26 3 2 45 45 H 1.08998 * 110.41044 * 277.82227 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7474 2.0459 -1.3022 5 6 2.7455 3.2223 -1.3577 6 6 3.8980 2.8148 -0.4169 7 1 3.9915 3.5310 0.3995 8 6 5.2121 2.7229 -1.1950 9 7 5.5983 4.0573 -1.6604 10 6 6.7308 4.2209 -2.3726 11 8 7.4317 3.2609 -2.6293 12 6 7.1192 5.5637 -2.8415 13 6 6.3845 6.6817 -2.4560 14 6 6.7525 7.9387 -2.8975 15 6 7.8537 8.1040 -3.7263 16 6 8.5994 7.0182 -4.1243 17 6 8.2461 5.7277 -3.6890 18 6 9.0033 4.6093 -4.0902 19 1 8.5185 3.6571 -4.2470 20 6 10.3867 4.7328 -4.2860 21 7 11.0007 5.8312 -3.9352 22 14 11.3513 3.3265 -5.0484 23 1 10.4297 2.2032 -5.3553 24 1 11.9980 3.7919 -6.3017 25 1 12.3929 2.8665 -4.0952 26 6 3.4992 1.4265 0.1280 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 0.7224 2.4153 -1.3340 33 1 1.9289 1.3543 -2.1249 34 1 2.2721 4.1376 -1.0022 35 1 3.1160 3.3568 -2.3739 36 1 5.0812 2.0628 -2.0524 37 1 5.9918 2.3248 -0.5457 38 1 5.0394 4.8230 -1.4554 39 1 5.5259 6.5665 -1.8111 40 1 6.1773 8.8012 -2.5945 41 1 8.1300 9.0938 -4.0584 42 1 9.4543 7.1562 -4.7696 43 1 11.9574 5.9164 -4.0704 44 1 3.9549 0.6379 -0.4709 45 1 3.7933 1.3294 1.1731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601005607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:40 Heat of formation + Delta-G solvation = -38.839455 kcal Electronic energy + Delta-G solvation = -24229.341789 eV Core-core repulsion = 20823.994145 eV Total energy + Delta-G solvation = -3405.347644 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89549 -40.01857 -38.54030 -36.26455 -35.53264 -33.91008 -31.89262 -31.47677 -30.22933 -30.00806 -27.40721 -25.98337 -23.96971 -23.73365 -22.65287 -21.91925 -21.04228 -20.78566 -19.36687 -18.03882 -17.37978 -17.13609 -16.81291 -16.38571 -15.92896 -15.84564 -15.49731 -15.41964 -14.94066 -14.80669 -14.49589 -14.07966 -13.90313 -13.86558 -13.49746 -13.41056 -13.14554 -12.86276 -12.81595 -12.50909 -12.42528 -12.33655 -12.27416 -12.17735 -11.91298 -11.88152 -11.69521 -11.49384 -11.43034 -11.14779 -10.25915 -9.94743 -9.50278 -9.37713 -9.22472 -8.67107 -6.35871 0.53054 1.01584 1.32673 1.47392 1.48926 2.20839 2.36651 2.44361 2.79295 3.01962 3.66136 3.68058 3.74498 3.82787 4.18013 4.25515 4.31193 4.34726 4.39535 4.40454 4.53206 4.59623 4.61232 4.68096 4.69174 4.75146 4.90677 4.93235 4.96603 5.05128 5.08668 5.12574 5.17967 5.24948 5.27039 5.35446 5.36287 5.63270 5.67956 5.83632 5.84619 6.06218 6.07299 6.12143 6.35586 6.66213 6.81052 6.93624 7.02447 7.67946 8.30007 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.003281 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.060218 B = 8532.604324 C = 9730.944536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.517 5.517 4 C 0.034 3.966 5 C -0.122 4.122 6 C -0.091 4.091 7 H 0.097 0.903 8 C 0.136 3.864 9 N -0.725 5.725 10 C 0.558 3.442 11 O -0.581 6.581 12 C -0.280 4.280 13 C -0.053 4.053 14 C -0.237 4.237 15 C -0.093 4.093 16 C -0.178 4.178 17 C 0.112 3.888 18 C -0.456 4.456 19 H 0.081 0.919 20 C 0.030 3.970 21 N -0.823 5.823 22 Si 0.979 3.021 23 H -0.270 1.270 24 H -0.254 1.254 25 H -0.267 1.267 26 C 0.041 3.959 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.407 0.593 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.289 0.711 44 H 0.042 0.958 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 -5.382 6.806 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 N -0.241 5.241 4 C -0.094 4.094 5 C -0.160 4.160 6 C -0.111 4.111 7 H 0.115 0.885 8 C 0.012 3.988 9 N -0.379 5.379 10 C 0.351 3.649 11 O -0.463 6.463 12 C -0.285 4.285 13 C -0.072 4.072 14 C -0.255 4.255 15 C -0.111 4.111 16 C -0.198 4.198 17 C 0.108 3.892 18 C -0.485 4.485 19 H 0.099 0.901 20 C -0.185 4.185 21 N -0.450 5.450 22 Si 0.801 3.199 23 H -0.194 1.194 24 H -0.178 1.178 25 H -0.191 1.191 26 C -0.088 4.088 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.244 0.756 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.354 -5.727 7.097 18.725 hybrid contribution 1.129 -0.700 -0.992 1.658 sum -15.225 -6.427 6.105 17.618 Atomic orbital electron populations 1.21709 0.93678 1.02273 1.02280 1.22323 0.97248 0.88734 1.01038 1.65467 1.10842 1.16556 1.31225 1.23140 1.00480 0.95647 0.90128 1.22415 0.95035 0.99186 0.99320 1.22031 0.92455 0.98415 0.98157 0.88505 1.21261 0.96106 0.84237 0.97221 1.45732 1.24690 1.10577 1.56897 1.18471 0.80281 0.88954 0.77176 1.90649 1.53488 1.43313 1.58868 1.19831 1.05847 0.92638 1.10156 1.21066 0.97271 0.91885 0.96945 1.20807 1.01220 0.96996 1.06526 1.21190 0.95118 0.97679 0.97156 1.21319 1.01370 0.92904 1.04170 1.17895 0.90193 0.93596 0.87517 1.20172 0.92976 0.97654 1.37689 0.90089 1.26810 0.99103 0.99309 0.93249 1.69750 1.11787 1.27753 1.35694 0.85204 0.77722 0.78159 0.78861 1.19438 1.17831 1.19146 1.23058 0.88407 0.95462 1.01824 0.92057 0.92881 0.91150 0.95014 0.90233 0.89038 0.94376 0.89383 0.91761 0.93622 0.93131 0.75632 0.84890 0.84905 0.86276 0.88123 0.90056 0.93922 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.97 71.98 0.72 -1.11 16 2 C 0.03 0.54 5.53 86.30 0.48 1.02 16 3 N -0.52 -9.46 5.37 -881.50 -4.73 -14.19 16 4 C 0.03 0.60 5.74 86.45 0.50 1.10 16 5 C -0.12 -2.30 6.33 31.49 0.20 -2.10 16 6 C -0.09 -1.89 3.13 -9.90 -0.03 -1.92 16 7 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 8 C 0.14 3.96 4.76 86.38 0.41 4.37 16 9 N -0.72 -24.54 5.27 -466.37 -2.46 -27.00 16 10 C 0.56 26.16 7.72 86.67 0.67 26.83 16 11 O -0.58 -32.14 13.57 -4.04 -0.05 -32.19 16 12 C -0.28 -13.70 5.92 -19.70 -0.12 -13.82 16 13 C -0.05 -2.11 9.52 22.50 0.21 -1.90 16 14 C -0.24 -9.18 10.03 22.40 0.22 -8.96 16 15 C -0.09 -4.04 10.01 22.26 0.22 -3.82 16 16 C -0.18 -9.29 8.62 22.72 0.20 -9.09 16 17 C 0.11 6.23 5.52 -21.11 -0.12 6.12 16 18 C -0.46 -26.65 7.71 23.42 0.18 -26.47 16 19 H 0.08 5.00 5.86 -2.91 -0.02 4.98 16 20 C 0.03 1.61 5.27 85.36 0.45 2.06 16 21 N -0.82 -44.58 11.06 21.88 0.24 -44.34 16 22 Si 0.98 42.32 29.57 68.60 2.03 44.35 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 C 0.04 0.79 6.03 86.45 0.52 1.31 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.69 7.26 -2.38 -0.02 0.68 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.03 0.52 7.88 -2.39 -0.02 0.50 16 31 H 0.08 1.15 8.13 -2.38 -0.02 1.13 16 32 H 0.09 1.43 7.76 -2.39 -0.02 1.41 16 33 H 0.04 0.72 7.82 -2.39 -0.02 0.70 16 34 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.06 1.40 7.63 -2.39 -0.02 1.38 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.41 11.20 6.38 -92.71 -0.59 10.61 16 39 H 0.13 4.02 6.43 -2.91 -0.02 4.00 16 40 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 42 H 0.10 5.49 6.52 -2.91 -0.02 5.47 16 43 H 0.29 14.06 8.29 -92.71 -0.77 13.29 16 44 H 0.04 0.87 7.72 -2.38 -0.02 0.86 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -68.08 358.76 0.13 -67.95 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.39 Total: 31.80 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.71 Total: -26.38 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -6.95 Total: -85.52 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -68.08 0.13 -67.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601005607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.108 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds