Wall clock time and date at job start Tue Mar 31 2020 08:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46378 * 2 1 4 4 C 1.52998 * 109.47149 * 240.00190 * 2 1 3 5 5 C 1.50692 * 109.47531 * 64.99945 * 4 2 1 6 6 H 1.08005 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00438 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99687 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00624 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47098 * 89.99471 * 9 7 5 11 11 H 1.48500 * 109.47483 * 209.99834 * 9 7 5 12 12 H 1.48506 * 109.46807 * 329.99580 * 9 7 5 13 13 C 1.52997 * 109.46899 * 119.99647 * 2 1 3 14 14 N 1.46896 * 109.47479 * 294.00540 * 13 2 1 15 15 C 1.47161 * 111.00210 * 152.78675 * 14 13 2 16 16 C 1.52900 * 108.51714 * 52.16314 * 15 14 13 17 17 C 1.50718 * 109.96404 * 50.34307 * 16 15 14 18 18 C 1.38685 * 118.48434 * 163.14990 * 17 16 15 19 19 C 1.38037 * 120.34174 * 179.80112 * 18 17 16 20 20 C 1.38251 * 119.83322 * 359.97438 * 19 18 17 21 21 C 1.38011 * 119.86885 * 0.08632 * 20 19 18 22 22 C 1.37830 * 121.66420 * 343.10637 * 17 16 15 23 23 C 1.46630 * 111.00282 * 275.77182 * 14 13 2 24 24 H 1.08998 * 109.30657 * 168.86689 * 23 14 13 25 25 C 1.50700 * 109.30462 * 49.48441 * 23 14 13 26 26 N 1.34777 * 120.00335 * 75.95057 * 25 23 14 27 27 O 1.21280 * 120.00270 * 255.95807 * 25 23 14 28 28 H 1.09002 * 109.47256 * 184.12109 * 1 2 3 29 29 H 1.09001 * 109.47801 * 304.12386 * 1 2 3 30 30 H 1.09006 * 109.47017 * 64.12439 * 1 2 3 31 31 H 1.08999 * 109.46714 * 185.00108 * 4 2 1 32 32 H 1.08996 * 109.46849 * 304.99399 * 4 2 1 33 33 H 0.97003 * 120.00425 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46858 * 174.00573 * 13 2 1 35 35 H 1.08998 * 109.47123 * 54.01301 * 13 2 1 36 36 H 1.08998 * 109.63386 * 171.87292 * 15 14 13 37 37 H 1.09003 * 109.63026 * 292.45803 * 15 14 13 38 38 H 1.08999 * 109.38721 * 170.49874 * 16 15 14 39 39 H 1.08998 * 109.38917 * 290.29251 * 16 15 14 40 40 H 1.08000 * 119.82979 * 359.78659 * 18 17 16 41 41 H 1.07999 * 120.07992 * 179.97438 * 19 18 17 42 42 H 1.08007 * 120.06687 * 180.02562 * 20 19 18 43 43 H 1.08010 * 119.81599 * 179.97438 * 21 20 19 44 44 H 0.97006 * 119.99615 * 4.02003 * 26 25 23 45 45 H 0.96996 * 120.00538 * 184.01889 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5193 -3.8511 9 14 1.4977 0.5621 -5.2497 10 1 2.5628 1.5417 -5.5830 11 1 1.3103 -0.3722 -6.3888 12 1 0.2264 1.2833 -4.9869 13 6 2.0399 -0.7212 1.2493 14 7 1.6720 0.0498 2.4443 15 6 1.5389 -0.8280 3.6179 16 6 2.8112 -1.6665 3.7440 17 6 4.0241 -0.7741 3.6789 18 6 5.2388 -1.2756 4.1221 19 6 6.3749 -0.4930 4.0761 20 6 6.3017 0.7974 3.5851 21 6 5.0932 1.2978 3.1450 22 6 3.9498 0.5135 3.1929 23 6 2.6525 1.1072 2.7101 24 1 2.2589 1.7804 3.4716 25 6 2.9015 1.8854 1.4439 26 7 1.9893 2.7782 1.0111 27 8 3.9227 1.7083 0.8141 28 1 -0.3634 -1.0250 0.0739 29 1 -0.3635 0.5765 0.8507 30 1 -0.3633 0.4485 -0.9247 31 1 3.1263 -0.7994 -1.2055 32 1 1.6055 -1.7197 -1.2951 33 1 2.9229 -1.8423 -4.7317 34 1 3.1246 -0.8150 1.1972 35 1 1.5917 -1.7132 1.3045 36 1 1.4088 -0.2228 4.5151 37 1 0.6788 -1.4850 3.4882 38 1 2.8025 -2.1964 4.6964 39 1 2.8510 -2.3886 2.9285 40 1 5.2961 -2.2837 4.5055 41 1 7.3185 -0.8877 4.4227 42 1 7.1884 1.4129 3.5470 43 1 5.0369 2.3061 2.7620 44 1 1.2002 2.9626 1.5443 45 1 2.1218 3.2364 0.1665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602452182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:23 Heat of formation + Delta-G solvation = -7.234460 kcal Electronic energy + Delta-G solvation = -26135.680930 eV Core-core repulsion = 22731.703781 eV Total energy + Delta-G solvation = -3403.977149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13428 -38.63531 -37.23488 -34.80336 -33.32335 -32.59635 -32.11414 -30.73204 -29.20833 -27.08529 -26.27400 -24.86821 -23.31541 -22.54018 -22.22763 -20.60107 -19.38879 -18.82141 -17.27669 -16.67728 -16.28096 -16.07797 -15.86265 -15.14028 -15.04130 -14.42160 -14.31142 -14.13233 -13.70354 -13.53611 -13.21053 -12.93304 -12.74185 -12.41170 -12.36033 -12.20426 -11.77822 -11.46966 -11.43622 -11.25924 -11.08536 -10.80720 -10.73583 -10.59839 -10.24498 -10.20625 -9.70320 -9.53286 -9.16842 -8.95309 -8.82116 -8.64956 -8.50987 -8.22702 -8.20060 -5.88363 -3.88640 1.39607 1.49809 2.84794 3.37708 3.43497 3.45633 3.66169 3.95547 4.12902 4.54771 4.67725 4.70112 4.91253 5.04557 5.10824 5.16218 5.24929 5.32726 5.46024 5.47698 5.55255 5.65374 5.73993 5.83606 5.88774 6.04915 6.07772 6.16482 6.25498 6.38280 6.47545 6.57610 6.59310 6.66091 6.73209 6.99040 7.03914 7.08006 7.08927 7.27269 7.30039 7.40808 7.63354 7.81040 7.99373 8.12596 8.56380 8.59278 9.17039 9.73423 11.23545 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.004621 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.971934 B = 6057.626989 C = 6232.611496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.095 4.095 3 H 0.079 0.921 4 C 0.031 3.969 5 C -0.504 4.504 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.048 3.952 14 N -0.509 5.509 15 C 0.054 3.946 16 C -0.121 4.121 17 C -0.067 4.067 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.129 4.129 21 C -0.079 4.079 22 C -0.098 4.098 23 C 0.102 3.898 24 H 0.105 0.895 25 C 0.536 3.464 26 N -0.848 5.848 27 O -0.521 6.521 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.258 0.742 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.400 0.600 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 4.670 20.053 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.115 4.115 3 H 0.096 0.904 4 C -0.007 4.007 5 C -0.543 4.543 6 H 0.072 0.928 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.079 4.079 14 N -0.232 5.232 15 C -0.074 4.074 16 C -0.159 4.159 17 C -0.068 4.068 18 C -0.145 4.145 19 C -0.134 4.134 20 C -0.147 4.147 21 C -0.098 4.098 22 C -0.100 4.100 23 C -0.010 4.010 24 H 0.123 0.877 25 C 0.320 3.680 26 N -0.412 5.412 27 O -0.394 6.394 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.228 0.772 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.196 4.533 19.538 20.058 hybrid contribution 0.358 0.188 -0.977 1.057 sum 0.554 4.721 18.561 19.160 Atomic orbital electron populations 1.21588 0.96152 0.99984 1.00114 1.21577 0.95476 1.00902 0.93498 0.90364 1.19052 0.96027 0.95138 0.90450 1.21163 1.34188 1.07994 0.90935 0.92827 1.25009 0.95480 0.95093 0.98991 1.69975 1.39268 1.21292 1.23170 0.86665 0.78788 0.79856 0.83085 1.20822 1.21386 1.19973 1.22538 0.99483 0.96628 0.89212 1.62845 1.43030 1.13015 1.04293 1.22291 0.96581 0.95174 0.93386 1.21185 0.93452 0.98197 1.03075 1.19467 0.95291 0.93494 0.98510 1.20987 0.92280 0.99628 1.01555 1.21048 0.98064 0.94454 0.99836 1.21034 0.97632 0.96093 0.99962 1.21054 0.92132 0.99979 0.96625 1.19763 0.95556 0.94410 1.00273 1.20715 0.89752 0.94789 0.95731 0.87690 1.19839 0.83131 0.79160 0.85883 1.43845 1.25565 1.45242 1.26555 1.90848 1.26943 1.64966 1.56690 0.94647 0.94250 0.92721 0.96919 0.97150 0.93231 0.93395 0.91469 0.90581 0.89480 0.90308 0.89896 0.86321 0.86327 0.86281 0.86246 0.77218 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.92 37.16 0.33 -1.97 16 2 C -0.10 -2.00 2.13 -90.62 -0.19 -2.19 16 3 H 0.08 1.63 3.48 -51.93 -0.18 1.45 16 4 C 0.03 0.84 4.45 -27.89 -0.12 0.71 16 5 C -0.50 -14.55 8.35 -34.45 -0.29 -14.84 16 6 H 0.05 1.49 7.07 -52.48 -0.37 1.12 16 7 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -28.04 13.29 55.43 0.74 -27.30 16 9 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.05 0.87 2.70 -3.83 -0.01 0.86 16 14 N -0.51 -7.10 4.40 -229.55 -1.01 -8.11 16 15 C 0.05 0.60 5.88 -3.73 -0.02 0.58 16 16 C -0.12 -1.41 5.23 -27.93 -0.15 -1.55 16 17 C -0.07 -0.92 5.20 -104.60 -0.54 -1.47 16 18 C -0.13 -1.61 9.66 -39.49 -0.38 -1.99 16 19 C -0.12 -1.44 10.05 -39.65 -0.40 -1.84 16 20 C -0.13 -1.71 10.05 -39.66 -0.40 -2.11 16 21 C -0.08 -1.17 8.19 -39.48 -0.32 -1.49 16 22 C -0.10 -1.44 4.40 -104.63 -0.46 -1.90 16 23 C 0.10 1.41 2.62 -70.20 -0.18 1.22 16 24 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 25 C 0.54 8.59 3.65 -10.99 -0.04 8.55 16 26 N -0.85 -10.81 7.53 31.22 0.24 -10.58 16 27 O -0.52 -10.81 14.90 5.56 0.08 -10.73 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.63 7.90 -51.93 -0.41 0.22 16 30 H 0.05 1.13 6.84 -51.93 -0.36 0.77 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 34 H 0.05 1.00 6.42 -51.93 -0.33 0.67 16 35 H 0.07 1.19 7.41 -51.93 -0.38 0.81 16 36 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.08 7.08 -51.93 -0.37 0.71 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.74 6.93 -52.48 -0.36 1.37 16 44 H 0.40 3.81 8.83 -40.82 -0.36 3.45 16 45 H 0.40 5.26 8.93 -40.82 -0.36 4.89 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -34.83 348.17 -9.86 -44.69 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.85 Total: 7.41 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -3.28 Total: -17.89 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.04 Total: -45.99 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.83 -9.86 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602452182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.452 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds