Wall clock time and date at job start Tue Mar 31 2020 08:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46378 * 2 1 4 4 C 1.52998 * 109.47149 * 240.00190 * 2 1 3 5 5 C 1.50692 * 109.47531 * 64.99945 * 4 2 1 6 6 H 1.08005 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00438 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99687 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00624 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47098 * 89.99471 * 9 7 5 11 11 H 1.48500 * 109.47483 * 209.99834 * 9 7 5 12 12 H 1.48506 * 109.46807 * 329.99580 * 9 7 5 13 13 C 1.52997 * 109.46899 * 119.99647 * 2 1 3 14 14 N 1.46896 * 109.47479 * 294.00540 * 13 2 1 15 15 C 1.47161 * 111.00210 * 152.78675 * 14 13 2 16 16 C 1.52900 * 108.51714 * 52.16314 * 15 14 13 17 17 C 1.50718 * 109.96404 * 50.34307 * 16 15 14 18 18 C 1.38685 * 118.48434 * 163.14990 * 17 16 15 19 19 C 1.38037 * 120.34174 * 179.80112 * 18 17 16 20 20 C 1.38251 * 119.83322 * 359.97438 * 19 18 17 21 21 C 1.38011 * 119.86885 * 0.08632 * 20 19 18 22 22 C 1.37830 * 121.66420 * 343.10637 * 17 16 15 23 23 C 1.46630 * 111.00282 * 275.77182 * 14 13 2 24 24 H 1.08998 * 109.30657 * 168.86689 * 23 14 13 25 25 C 1.50700 * 109.30462 * 49.48441 * 23 14 13 26 26 N 1.34777 * 120.00335 * 75.95057 * 25 23 14 27 27 O 1.21280 * 120.00270 * 255.95807 * 25 23 14 28 28 H 1.09002 * 109.47256 * 184.12109 * 1 2 3 29 29 H 1.09001 * 109.47801 * 304.12386 * 1 2 3 30 30 H 1.09006 * 109.47017 * 64.12439 * 1 2 3 31 31 H 1.08999 * 109.46714 * 185.00108 * 4 2 1 32 32 H 1.08996 * 109.46849 * 304.99399 * 4 2 1 33 33 H 0.97003 * 120.00425 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46858 * 174.00573 * 13 2 1 35 35 H 1.08998 * 109.47123 * 54.01301 * 13 2 1 36 36 H 1.08998 * 109.63386 * 171.87292 * 15 14 13 37 37 H 1.09003 * 109.63026 * 292.45803 * 15 14 13 38 38 H 1.08999 * 109.38721 * 170.49874 * 16 15 14 39 39 H 1.08998 * 109.38917 * 290.29251 * 16 15 14 40 40 H 1.08000 * 119.82979 * 359.78659 * 18 17 16 41 41 H 1.07999 * 120.07992 * 179.97438 * 19 18 17 42 42 H 1.08007 * 120.06687 * 180.02562 * 20 19 18 43 43 H 1.08010 * 119.81599 * 179.97438 * 21 20 19 44 44 H 0.97006 * 119.99615 * 4.02003 * 26 25 23 45 45 H 0.96996 * 120.00538 * 184.01889 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5193 -3.8511 9 14 1.4977 0.5621 -5.2497 10 1 2.5628 1.5417 -5.5830 11 1 1.3103 -0.3722 -6.3888 12 1 0.2264 1.2833 -4.9869 13 6 2.0399 -0.7212 1.2493 14 7 1.6720 0.0498 2.4443 15 6 1.5389 -0.8280 3.6179 16 6 2.8112 -1.6665 3.7440 17 6 4.0241 -0.7741 3.6789 18 6 5.2388 -1.2756 4.1221 19 6 6.3749 -0.4930 4.0761 20 6 6.3017 0.7974 3.5851 21 6 5.0932 1.2978 3.1450 22 6 3.9498 0.5135 3.1929 23 6 2.6525 1.1072 2.7101 24 1 2.2589 1.7804 3.4716 25 6 2.9015 1.8854 1.4439 26 7 1.9893 2.7782 1.0111 27 8 3.9227 1.7083 0.8141 28 1 -0.3634 -1.0250 0.0739 29 1 -0.3635 0.5765 0.8507 30 1 -0.3633 0.4485 -0.9247 31 1 3.1263 -0.7994 -1.2055 32 1 1.6055 -1.7197 -1.2951 33 1 2.9229 -1.8423 -4.7317 34 1 3.1246 -0.8150 1.1972 35 1 1.5917 -1.7132 1.3045 36 1 1.4088 -0.2228 4.5151 37 1 0.6788 -1.4850 3.4882 38 1 2.8025 -2.1964 4.6964 39 1 2.8510 -2.3886 2.9285 40 1 5.2961 -2.2837 4.5055 41 1 7.3185 -0.8877 4.4227 42 1 7.1884 1.4129 3.5470 43 1 5.0369 2.3061 2.7620 44 1 1.2002 2.9626 1.5443 45 1 2.1218 3.2364 0.1665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602452182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:22 Heat of formation + Delta-G solvation = -32.289655 kcal Electronic energy + Delta-G solvation = -26136.767404 eV Core-core repulsion = 22731.703781 eV Total energy + Delta-G solvation = -3405.063624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27342 -39.79412 -38.45078 -36.51620 -34.61257 -34.21154 -33.54005 -31.90945 -30.21976 -29.01943 -27.73587 -26.11918 -24.97925 -23.69427 -23.45170 -21.74891 -20.96860 -20.06628 -18.52475 -18.33120 -17.72514 -17.39921 -16.97790 -16.61039 -16.22405 -16.00859 -15.59172 -15.28801 -14.93750 -14.86397 -14.52797 -14.34821 -14.15945 -14.07660 -13.52118 -13.37072 -13.22694 -13.00225 -12.82206 -12.71897 -12.51967 -12.43763 -12.18532 -12.13095 -11.94160 -11.66539 -11.36470 -11.07426 -10.96076 -10.80613 -10.55871 -10.26273 -9.67270 -9.52109 -9.39962 -8.16585 -6.25854 0.38450 0.47765 1.37368 1.40069 1.50258 1.62172 2.41307 2.57547 2.90338 2.97613 3.16800 3.60462 3.75939 3.95552 4.06128 4.11087 4.16229 4.24072 4.24718 4.40788 4.48522 4.59345 4.62698 4.64605 4.71174 4.84486 4.86262 4.99443 5.03580 5.08588 5.13394 5.22592 5.28962 5.47039 5.50676 5.55811 5.57896 5.59431 5.63666 5.81920 5.88167 5.91586 6.01416 6.05592 6.10160 6.31078 6.58032 6.90114 7.41951 7.45344 8.96378 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.004621 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.971934 B = 6057.626989 C = 6232.611496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 H 0.082 0.918 4 C 0.039 3.961 5 C -0.518 4.518 6 H 0.064 0.936 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.963 3.037 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.255 1.255 13 C 0.067 3.933 14 N -0.497 5.497 15 C 0.052 3.948 16 C -0.118 4.118 17 C -0.083 4.083 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.100 4.100 22 C -0.117 4.117 23 C 0.105 3.895 24 H 0.143 0.857 25 C 0.530 3.470 26 N -0.832 5.832 27 O -0.578 6.578 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.036 0.964 31 H -0.038 1.038 32 H -0.018 1.018 33 H 0.260 0.740 34 H 0.011 0.989 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.111 0.889 44 H 0.418 0.582 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 5.633 21.800 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.110 4.110 3 H 0.100 0.900 4 C 0.002 3.998 5 C -0.556 4.556 6 H 0.082 0.918 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.788 3.212 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.179 1.179 13 C -0.061 4.061 14 N -0.220 5.220 15 C -0.075 4.075 16 C -0.156 4.156 17 C -0.083 4.083 18 C -0.153 4.153 19 C -0.138 4.138 20 C -0.160 4.160 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.006 4.006 24 H 0.160 0.840 25 C 0.315 3.685 26 N -0.396 5.396 27 O -0.456 6.456 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.055 0.945 31 H -0.020 1.020 32 H 0.001 0.999 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.129 0.871 44 H 0.250 0.750 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.680 5.526 21.328 22.096 hybrid contribution 0.992 -0.124 -1.481 1.787 sum -0.688 5.402 19.847 20.580 Atomic orbital electron populations 1.21472 0.94013 1.00393 1.00783 1.21435 0.97020 1.00477 0.92042 0.90009 1.18917 0.92694 0.94488 0.93735 1.21574 1.33947 1.08335 0.91744 0.91752 1.26033 0.95348 0.96136 1.02918 1.70140 1.40647 1.23297 1.24102 0.85473 0.79115 0.78289 0.78337 1.20371 1.20934 1.17916 1.22111 0.96963 0.96825 0.90219 1.62785 1.42340 1.12905 1.04004 1.22501 0.96763 0.95350 0.92891 1.21203 0.92858 0.97681 1.03867 1.19804 0.96616 0.93459 0.98466 1.21357 0.92097 1.00671 1.01146 1.21405 0.99237 0.94039 0.99153 1.21327 0.97799 0.96964 0.99888 1.21155 0.93113 1.00047 0.97564 1.19948 0.95934 0.95136 1.00840 1.20813 0.89794 0.94816 0.95217 0.83987 1.20347 0.82618 0.79286 0.86294 1.43749 1.25500 1.43860 1.26467 1.90825 1.29358 1.66817 1.58572 0.94853 0.90470 0.94493 1.01967 0.99946 0.93140 0.97026 0.91378 0.87666 0.87971 0.87364 0.91828 0.84113 0.83746 0.84746 0.87108 0.75023 0.76524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.00 8.92 71.98 0.64 -3.36 16 2 C -0.09 -3.84 2.13 -10.80 -0.02 -3.86 16 3 H 0.08 3.42 3.48 -2.38 -0.01 3.42 16 4 C 0.04 2.23 4.45 29.84 0.13 2.37 16 5 C -0.52 -30.60 8.35 25.60 0.21 -30.38 16 6 H 0.06 3.58 7.07 -2.91 -0.02 3.56 16 7 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 8 N -0.94 -60.88 13.29 21.45 0.28 -60.59 16 9 Si 0.96 46.16 29.54 68.60 2.03 48.19 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.07 2.44 2.70 86.30 0.23 2.67 16 14 N -0.50 -12.87 4.40 -880.17 -3.88 -16.74 16 15 C 0.05 0.99 5.88 86.22 0.51 1.50 16 16 C -0.12 -2.52 5.23 29.82 0.16 -2.36 16 17 C -0.08 -2.20 5.20 -19.85 -0.10 -2.30 16 18 C -0.13 -3.27 9.66 22.33 0.22 -3.05 16 19 C -0.12 -2.87 10.05 22.23 0.22 -2.65 16 20 C -0.14 -3.75 10.05 22.22 0.22 -3.53 16 21 C -0.10 -3.00 8.19 22.33 0.18 -2.82 16 22 C -0.12 -3.38 4.40 -19.87 -0.09 -3.47 16 23 C 0.11 2.74 2.62 43.45 0.11 2.85 16 24 H 0.14 2.62 8.14 -2.39 -0.02 2.61 16 25 C 0.53 16.92 3.65 87.66 0.32 17.24 16 26 N -0.83 -20.20 7.53 -173.53 -1.31 -21.50 16 27 O -0.58 -25.06 14.90 -3.03 -0.05 -25.10 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 2.23 7.90 -2.39 -0.02 2.21 16 30 H 0.04 1.47 6.84 -2.38 -0.02 1.45 16 31 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 32 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 33 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.01 0.50 6.42 -2.39 -0.02 0.49 16 35 H 0.07 2.43 7.41 -2.39 -0.02 2.41 16 36 H 0.11 1.49 8.05 -2.39 -0.02 1.47 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.62 7.08 -2.39 -0.02 1.60 16 40 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.11 3.38 6.93 -2.91 -0.02 3.36 16 44 H 0.42 6.84 8.83 -92.70 -0.82 6.02 16 45 H 0.40 10.22 8.93 -92.71 -0.83 9.39 16 Total: -1.00 -80.36 348.17 -0.14 -80.51 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.64 Total: 26.41 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 3.41 Total: -31.17 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -4.90 Total: -98.84 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.10 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -80.36 -0.14 -80.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602452182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.215 kcal (2) G-P(sol) polarization free energy of solvation -80.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds