Wall clock time and date at job start Tue Mar 31 2020 07:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46941 * 2 1 4 4 C 1.50697 * 109.47181 * 239.99681 * 2 1 3 5 5 C 1.38234 * 120.00100 * 174.64651 * 4 2 1 6 6 C 1.38233 * 119.99936 * 179.79002 * 5 4 2 7 7 C 1.38232 * 120.00082 * 0.43408 * 6 5 4 8 8 C 1.38230 * 120.00128 * 359.82247 * 7 6 5 9 9 C 1.38237 * 119.99856 * 354.91811 * 4 2 1 10 10 N 1.46905 * 109.46939 * 119.99551 * 2 1 3 11 11 C 1.46892 * 110.99996 * 287.68024 * 10 2 1 12 12 C 1.50699 * 109.47124 * 197.40137 * 11 10 2 13 13 O 1.21280 * 120.00331 * 6.13650 * 12 11 10 14 14 N 1.34779 * 120.00060 * 186.14258 * 12 11 10 15 15 C 1.46503 * 119.99785 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47014 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00155 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00289 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99870 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47331 * 89.99813 * 20 18 16 22 22 H 1.48500 * 109.47049 * 209.99667 * 20 18 16 23 23 H 1.48505 * 109.47250 * 329.99739 * 20 18 16 24 24 C 1.46895 * 110.99822 * 51.63488 * 10 2 1 25 25 C 1.53008 * 117.49575 * 138.22883 * 24 10 2 26 26 C 1.53002 * 60.00160 * 252.50885 * 25 24 10 27 27 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47670 * 300.00208 * 1 2 3 29 29 H 1.08996 * 109.47556 * 60.00448 * 1 2 3 30 30 H 1.08002 * 119.99888 * 359.97438 * 5 4 2 31 31 H 1.08005 * 119.99739 * 180.27554 * 6 5 4 32 32 H 1.08005 * 120.00039 * 179.83261 * 7 6 5 33 33 H 1.08004 * 120.00417 * 180.02562 * 8 7 6 34 34 H 1.07995 * 120.00178 * 359.97438 * 9 4 2 35 35 H 1.09002 * 109.47579 * 317.40002 * 11 10 2 36 36 H 1.09000 * 109.47305 * 77.39721 * 11 10 2 37 37 H 0.96998 * 120.00419 * 359.97438 * 14 12 11 38 38 H 1.08999 * 109.47381 * 299.99564 * 15 14 12 39 39 H 1.09003 * 109.47257 * 59.99952 * 15 14 12 40 40 H 0.96997 * 120.00457 * 180.02562 * 19 18 16 41 41 H 1.08999 * 115.55334 * 283.93390 * 24 10 2 42 42 H 1.08992 * 117.49987 * 0.02562 * 25 24 10 43 43 H 1.09002 * 117.49685 * 145.01745 * 25 24 10 44 44 H 1.08996 * 117.50331 * 252.51419 * 26 25 24 45 45 H 1.09000 * 117.49775 * 107.48809 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 3.3865 -0.7409 -1.5065 6 6 3.8476 -1.3963 -2.6328 7 6 2.9539 -2.0136 -3.4878 8 6 1.5993 -1.9786 -3.2146 9 6 1.1384 -1.3269 -2.0859 10 7 2.0196 -0.6924 1.1995 11 6 1.8024 0.1216 2.4028 12 6 2.6708 -0.3937 3.5214 13 8 3.4792 -1.2719 3.3064 14 7 2.5491 0.1213 4.7610 15 6 3.3929 -0.3801 5.8486 16 6 3.0621 0.3559 7.1213 17 1 2.2992 1.1204 7.1203 18 6 3.7325 0.0527 8.2873 19 7 3.4434 0.6947 9.3981 20 14 5.0514 -1.2701 8.2893 21 1 6.3688 -0.6561 7.9842 22 1 5.1036 -1.9150 9.6259 23 1 4.7305 -2.2907 7.2594 24 6 1.3925 -2.0136 1.3375 25 6 2.2866 -3.1785 1.7675 26 6 1.7851 -3.0912 0.3247 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 4.0844 -0.2552 -0.8406 31 1 4.9060 -1.4239 -2.8462 32 1 3.3139 -2.5234 -4.3693 33 1 0.9010 -2.4613 -3.8823 34 1 0.0802 -1.2997 -1.8723 35 1 2.0605 1.1593 2.1910 36 1 0.7550 0.0609 2.6984 37 1 1.9028 0.8238 4.9331 38 1 3.2117 -1.4460 5.9873 39 1 4.4416 -0.2194 5.5985 40 1 3.9153 0.4816 10.2183 41 1 0.3629 -2.0104 1.6953 42 1 3.3399 -2.9644 1.9484 43 1 1.8452 -3.9417 2.4085 44 1 1.0138 -3.7969 0.0163 45 1 2.5086 -2.8197 -0.4441 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746115708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:35 Heat of formation + Delta-G solvation = 30.586631 kcal Electronic energy + Delta-G solvation = -24816.924953 eV Core-core repulsion = 21414.587850 eV Total energy + Delta-G solvation = -3402.337103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.31874 -38.88247 -37.49145 -34.87803 -34.17110 -32.37592 -32.04445 -31.02341 -29.08440 -28.16667 -26.03880 -24.10487 -22.48095 -22.10896 -21.98145 -21.42034 -19.90045 -19.25059 -17.57210 -16.89550 -16.25959 -15.98758 -15.45791 -15.30811 -15.00298 -14.90728 -14.59571 -14.12323 -13.92029 -13.74917 -13.37633 -13.02933 -12.80344 -12.69592 -12.53089 -12.43046 -12.27398 -11.99878 -11.57855 -11.47240 -11.10178 -11.06149 -10.97278 -10.81553 -10.73758 -10.14498 -9.95546 -9.91660 -9.47449 -9.09320 -8.96782 -8.75619 -8.72153 -8.23863 -8.04262 -6.20252 -4.22122 1.25868 1.35004 3.27513 3.33981 3.35509 3.43428 3.45784 3.84832 4.04072 4.26492 4.35045 4.54936 4.73335 4.90647 5.00516 5.03892 5.06213 5.15124 5.15911 5.18246 5.28070 5.33160 5.41492 5.44788 5.54297 5.55740 5.61063 5.69348 5.76699 5.87680 5.93187 5.95568 6.00814 6.32553 6.39182 6.44840 6.56643 6.66616 6.81521 6.91288 7.01417 7.11556 7.17947 7.31699 7.44858 8.18846 8.58033 8.78393 9.06608 9.40725 10.91805 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.003149 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.622276 B = 8889.641305 C = 9212.838540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.121 3.879 3 H 0.092 0.908 4 C -0.062 4.062 5 C -0.094 4.094 6 C -0.124 4.124 7 C -0.125 4.125 8 C -0.125 4.125 9 C -0.114 4.114 10 N -0.480 5.480 11 C 0.039 3.961 12 C 0.501 3.499 13 O -0.532 6.532 14 N -0.712 5.712 15 C 0.224 3.776 16 C -0.542 4.542 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.894 5.894 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.261 1.261 24 C 0.006 3.994 25 C -0.145 4.145 26 C -0.174 4.174 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.394 0.606 38 H 0.023 0.977 39 H 0.019 0.981 40 H 0.267 0.733 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 -3.022 -24.832 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.013 3.987 3 H 0.110 0.890 4 C -0.062 4.062 5 C -0.113 4.113 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.132 4.132 10 N -0.203 5.203 11 C -0.092 4.092 12 C 0.285 3.715 13 O -0.409 6.409 14 N -0.362 5.362 15 C 0.102 3.898 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.127 4.127 19 N -0.531 5.531 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.185 1.185 24 C -0.102 4.102 25 C -0.183 4.183 26 C -0.211 4.211 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.227 0.773 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.136 0.864 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.151 -3.710 -24.795 25.595 hybrid contribution -0.580 -0.092 0.460 0.746 sum -5.731 -3.802 -24.336 25.289 Atomic orbital electron populations 1.22552 0.96941 1.02661 1.02320 1.20620 0.92841 0.97137 0.88067 0.89043 1.19636 0.93539 0.98014 0.95011 1.21046 0.95232 0.98633 0.96351 1.21149 0.99572 0.98396 0.95069 1.21106 0.93544 1.00071 0.99617 1.21065 0.95605 1.00051 0.97621 1.21126 0.99676 0.97776 0.94657 1.61567 1.56936 1.01393 1.00442 1.21990 0.98626 0.98112 0.90515 1.20291 0.84535 0.83190 0.83479 1.90598 1.36908 1.30488 1.82894 1.46159 1.40980 1.40219 1.08795 1.19420 0.90256 0.95223 0.84901 1.21114 1.23144 1.22097 0.91665 0.90351 1.24801 0.96720 0.96032 0.95128 1.69881 1.41872 1.41349 1.00030 0.86810 0.82349 0.82643 0.77832 1.19877 1.20982 1.18486 1.22182 0.95753 0.86035 1.06232 1.23102 1.02118 0.97677 0.95375 1.23165 1.03676 1.00178 0.94099 0.91586 0.92243 0.91839 0.85724 0.86332 0.86583 0.86531 0.86035 0.88323 0.92176 0.77342 0.95909 0.96319 0.92304 0.90261 0.86397 0.89911 0.89850 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.61 7.25 37.16 0.27 -1.34 16 2 C 0.12 1.26 2.57 -68.86 -0.18 1.08 16 3 H 0.09 0.90 7.79 -51.93 -0.40 0.50 16 4 C -0.06 -0.65 3.13 -104.63 -0.33 -0.97 16 5 C -0.09 -1.04 8.78 -39.58 -0.35 -1.39 16 6 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 7 C -0.13 -1.13 10.05 -39.59 -0.40 -1.52 16 8 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 9 C -0.11 -1.07 7.75 -39.58 -0.31 -1.37 16 10 N -0.48 -6.27 4.09 -221.53 -0.91 -7.18 16 11 C 0.04 0.52 4.93 -4.98 -0.02 0.49 16 12 C 0.50 9.28 7.60 -10.98 -0.08 9.19 16 13 O -0.53 -11.60 13.25 5.56 0.07 -11.52 16 14 N -0.71 -14.19 5.55 -61.47 -0.34 -14.54 16 15 C 0.22 5.50 4.50 -5.19 -0.02 5.48 16 16 C -0.54 -14.88 9.83 -34.44 -0.34 -15.22 16 17 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 19 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 20 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 24 C 0.01 0.08 3.19 -67.71 -0.22 -0.13 16 25 C -0.15 -2.18 9.13 -26.73 -0.24 -2.43 16 26 C -0.17 -2.16 8.50 -26.73 -0.23 -2.39 16 27 H 0.07 0.59 5.83 -51.93 -0.30 0.29 16 28 H 0.06 0.50 7.19 -51.93 -0.37 0.13 16 29 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.12 1.00 5.91 -52.49 -0.31 0.69 16 35 H 0.10 1.13 7.75 -51.93 -0.40 0.72 16 36 H 0.06 0.71 7.37 -51.93 -0.38 0.33 16 37 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 38 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 39 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.08 1.01 7.46 -51.93 -0.39 0.63 16 42 H 0.12 2.13 6.55 -51.93 -0.34 1.79 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 1.36 5.44 -51.93 -0.28 1.07 16 LS Contribution 354.64 15.07 5.34 5.34 Total: -1.00 -31.54 354.64 -9.87 -41.41 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.81 Total: 7.00 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.34 Total: -11.57 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.47 Total: -47.57 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.54 -9.87 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746115708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.994 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds