Wall clock time and date at job start Tue Mar 31 2020 07:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46941 * 2 1 4 4 C 1.50697 * 109.47181 * 239.99681 * 2 1 3 5 5 C 1.38234 * 120.00100 * 174.64651 * 4 2 1 6 6 C 1.38233 * 119.99936 * 179.79002 * 5 4 2 7 7 C 1.38232 * 120.00082 * 0.43408 * 6 5 4 8 8 C 1.38230 * 120.00128 * 359.82247 * 7 6 5 9 9 C 1.38237 * 119.99856 * 354.91811 * 4 2 1 10 10 N 1.46905 * 109.46939 * 119.99551 * 2 1 3 11 11 C 1.46892 * 110.99996 * 287.68024 * 10 2 1 12 12 C 1.50699 * 109.47124 * 197.40137 * 11 10 2 13 13 O 1.21280 * 120.00331 * 6.13650 * 12 11 10 14 14 N 1.34779 * 120.00060 * 186.14258 * 12 11 10 15 15 C 1.46503 * 119.99785 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47014 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00155 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00289 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99870 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47331 * 89.99813 * 20 18 16 22 22 H 1.48500 * 109.47049 * 209.99667 * 20 18 16 23 23 H 1.48505 * 109.47250 * 329.99739 * 20 18 16 24 24 C 1.46895 * 110.99822 * 51.63488 * 10 2 1 25 25 C 1.53008 * 117.49575 * 138.22883 * 24 10 2 26 26 C 1.53002 * 60.00160 * 252.50885 * 25 24 10 27 27 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47670 * 300.00208 * 1 2 3 29 29 H 1.08996 * 109.47556 * 60.00448 * 1 2 3 30 30 H 1.08002 * 119.99888 * 359.97438 * 5 4 2 31 31 H 1.08005 * 119.99739 * 180.27554 * 6 5 4 32 32 H 1.08005 * 120.00039 * 179.83261 * 7 6 5 33 33 H 1.08004 * 120.00417 * 180.02562 * 8 7 6 34 34 H 1.07995 * 120.00178 * 359.97438 * 9 4 2 35 35 H 1.09002 * 109.47579 * 317.40002 * 11 10 2 36 36 H 1.09000 * 109.47305 * 77.39721 * 11 10 2 37 37 H 0.96998 * 120.00419 * 359.97438 * 14 12 11 38 38 H 1.08999 * 109.47381 * 299.99564 * 15 14 12 39 39 H 1.09003 * 109.47257 * 59.99952 * 15 14 12 40 40 H 0.96997 * 120.00457 * 180.02562 * 19 18 16 41 41 H 1.08999 * 115.55334 * 283.93390 * 24 10 2 42 42 H 1.08992 * 117.49987 * 0.02562 * 25 24 10 43 43 H 1.09002 * 117.49685 * 145.01745 * 25 24 10 44 44 H 1.08996 * 117.50331 * 252.51419 * 26 25 24 45 45 H 1.09000 * 117.49775 * 107.48809 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 3.3865 -0.7409 -1.5065 6 6 3.8476 -1.3963 -2.6328 7 6 2.9539 -2.0136 -3.4878 8 6 1.5993 -1.9786 -3.2146 9 6 1.1384 -1.3269 -2.0859 10 7 2.0196 -0.6924 1.1995 11 6 1.8024 0.1216 2.4028 12 6 2.6708 -0.3937 3.5214 13 8 3.4792 -1.2719 3.3064 14 7 2.5491 0.1213 4.7610 15 6 3.3929 -0.3801 5.8486 16 6 3.0621 0.3559 7.1213 17 1 2.2992 1.1204 7.1203 18 6 3.7325 0.0527 8.2873 19 7 3.4434 0.6947 9.3981 20 14 5.0514 -1.2701 8.2893 21 1 6.3688 -0.6561 7.9842 22 1 5.1036 -1.9150 9.6259 23 1 4.7305 -2.2907 7.2594 24 6 1.3925 -2.0136 1.3375 25 6 2.2866 -3.1785 1.7675 26 6 1.7851 -3.0912 0.3247 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 4.0844 -0.2552 -0.8406 31 1 4.9060 -1.4239 -2.8462 32 1 3.3139 -2.5234 -4.3693 33 1 0.9010 -2.4613 -3.8823 34 1 0.0802 -1.2997 -1.8723 35 1 2.0605 1.1593 2.1910 36 1 0.7550 0.0609 2.6984 37 1 1.9028 0.8238 4.9331 38 1 3.2117 -1.4460 5.9873 39 1 4.4416 -0.2194 5.5985 40 1 3.9153 0.4816 10.2183 41 1 0.3629 -2.0104 1.6953 42 1 3.3399 -2.9644 1.9484 43 1 1.8452 -3.9417 2.4085 44 1 1.0138 -3.7969 0.0163 45 1 2.5086 -2.8197 -0.4441 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746115708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:34 Heat of formation + Delta-G solvation = 10.362883 kcal Electronic energy + Delta-G solvation = -24817.801920 eV Core-core repulsion = 21414.587850 eV Total energy + Delta-G solvation = -3403.214071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25796 -40.15342 -38.54913 -36.02271 -35.84302 -34.34902 -33.03813 -31.73672 -30.37140 -29.45221 -27.29459 -24.96425 -23.98031 -23.20699 -23.00814 -22.45769 -21.34827 -20.24872 -19.18015 -18.13787 -17.42516 -17.32738 -16.76189 -16.55551 -16.14987 -15.83427 -15.67654 -15.60547 -15.23546 -14.82566 -14.54806 -14.23153 -14.13235 -13.97730 -13.81235 -13.53962 -13.35009 -13.02632 -12.96839 -12.68750 -12.52274 -12.24990 -12.15035 -11.93878 -11.78312 -11.64274 -11.55796 -11.20957 -10.96175 -10.91422 -10.59979 -9.80860 -9.69070 -9.47128 -9.20684 -8.40052 -6.46280 0.53380 0.62607 1.31704 1.34000 1.46754 1.89272 2.27414 2.33129 2.91528 2.95522 2.97442 3.16022 3.79258 3.97055 4.02677 4.12482 4.18009 4.25768 4.26918 4.30957 4.33728 4.38977 4.46965 4.50761 4.70297 4.74802 4.79607 4.84769 4.86992 4.90396 4.98333 5.06692 5.19023 5.22855 5.26776 5.28584 5.30336 5.44987 5.64335 5.68765 5.73728 5.81786 6.00571 6.14435 6.20675 6.24902 6.55428 6.97147 7.18007 7.57638 8.74780 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.003149 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.622276 B = 8889.641305 C = 9212.838540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 H 0.096 0.904 4 C -0.071 4.071 5 C -0.114 4.114 6 C -0.135 4.135 7 C -0.129 4.129 8 C -0.127 4.127 9 C -0.115 4.115 10 N -0.498 5.498 11 C 0.050 3.950 12 C 0.497 3.503 13 O -0.566 6.566 14 N -0.712 5.712 15 C 0.238 3.762 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.026 3.974 19 N -0.932 5.932 20 Si 0.937 3.063 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.262 1.262 24 C 0.013 3.987 25 C -0.172 4.172 26 C -0.148 4.148 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.406 0.594 38 H 0.008 0.992 39 H 0.007 0.993 40 H 0.272 0.728 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -3.395 -27.077 28.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.015 3.985 3 H 0.114 0.886 4 C -0.071 4.071 5 C -0.133 4.133 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.144 4.144 9 C -0.133 4.133 10 N -0.222 5.222 11 C -0.081 4.081 12 C 0.284 3.716 13 O -0.445 6.445 14 N -0.364 5.364 15 C 0.114 3.886 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.174 4.174 19 N -0.571 5.571 20 Si 0.761 3.239 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.186 1.186 24 C -0.095 4.095 25 C -0.209 4.209 26 C -0.185 4.185 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.102 0.898 37 H 0.241 0.759 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.122 0.878 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.514 -4.060 -27.069 28.136 hybrid contribution -0.163 0.046 1.085 1.099 sum -6.677 -4.014 -25.983 27.126 Atomic orbital electron populations 1.22498 0.95129 1.02919 1.03323 1.20672 0.94215 0.96954 0.86628 0.88600 1.19693 0.93402 0.98608 0.95412 1.21053 0.95614 0.99715 0.96901 1.21327 1.00388 0.98536 0.95062 1.21387 0.93711 0.99647 0.99951 1.21392 0.95924 0.99473 0.97659 1.21316 1.00227 0.97283 0.94512 1.61444 1.58075 1.01578 1.01106 1.21918 0.98450 0.98936 0.88775 1.21240 0.84398 0.82208 0.83766 1.90606 1.38529 1.31984 1.83393 1.46018 1.40921 1.40859 1.08576 1.18973 0.90371 0.94020 0.85246 1.21322 1.22357 1.21586 0.92935 0.92259 1.25588 0.98854 0.98084 0.94884 1.69978 1.43325 1.43024 1.00778 0.85867 0.79893 0.80048 0.78110 1.19110 1.19839 1.18649 1.22234 0.95523 0.85960 1.05785 1.22930 1.00515 0.99676 0.97824 1.23105 1.03303 0.99763 0.92299 0.91634 0.91768 0.90345 0.87419 0.85640 0.84641 0.84236 0.84507 0.85831 0.89755 0.75904 0.97419 0.97543 0.91895 0.89111 0.90038 0.90002 0.87761 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 7.25 71.98 0.52 -1.98 16 2 C 0.12 2.27 2.57 44.17 0.11 2.38 16 3 H 0.10 1.68 7.79 -2.39 -0.02 1.66 16 4 C -0.07 -1.36 3.13 -19.87 -0.06 -1.42 16 5 C -0.11 -2.49 8.78 22.27 0.20 -2.29 16 6 C -0.14 -2.56 10.05 22.27 0.22 -2.34 16 7 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 8 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 9 C -0.12 -1.83 7.75 22.27 0.17 -1.66 16 10 N -0.50 -12.27 4.09 -854.78 -3.50 -15.77 16 11 C 0.05 1.24 4.93 85.56 0.42 1.66 16 12 C 0.50 18.18 7.60 87.66 0.67 18.84 16 13 O -0.57 -25.10 13.25 -3.03 -0.04 -25.14 16 14 N -0.71 -28.24 5.55 -466.77 -2.59 -30.83 16 15 C 0.24 11.78 4.50 85.63 0.38 12.17 16 16 C -0.54 -30.24 9.83 25.60 0.25 -29.99 16 17 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 18 C 0.03 1.49 5.47 84.65 0.46 1.95 16 19 N -0.93 -56.07 13.96 21.45 0.30 -55.77 16 20 Si 0.94 44.81 27.47 68.60 1.88 46.70 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 24 C 0.01 0.34 3.19 44.92 0.14 0.48 16 25 C -0.17 -5.20 9.13 30.60 0.28 -4.92 16 26 C -0.15 -3.45 8.50 30.60 0.26 -3.19 16 27 H 0.06 0.93 5.83 -2.39 -0.01 0.92 16 28 H 0.06 0.84 7.19 -2.38 -0.02 0.83 16 29 H 0.08 0.87 7.75 -2.39 -0.02 0.86 16 30 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.14 1.73 5.91 -2.91 -0.02 1.71 16 35 H 0.12 2.49 7.75 -2.39 -0.02 2.47 16 36 H 0.08 1.73 7.37 -2.39 -0.02 1.72 16 37 H 0.41 13.98 8.32 -92.71 -0.77 13.21 16 38 H 0.01 0.41 7.20 -2.39 -0.02 0.40 16 39 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.09 2.08 7.46 -2.39 -0.02 2.06 16 42 H 0.08 3.10 6.55 -2.39 -0.02 3.08 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.10 2.42 5.44 -2.39 -0.01 2.41 16 Total: -1.00 -69.16 354.64 0.70 -68.46 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.16 Total: 26.12 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 4.48 Total: -13.76 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -5.79 Total: -102.37 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.04 Total: -25.14 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -69.16 0.70 -68.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746115708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.824 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds