Wall clock time and date at job start Tue Mar 31 2020 07:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46704 * 2 1 4 4 C 1.50701 * 109.47464 * 119.99698 * 2 1 3 5 5 O 1.21280 * 119.99854 * 33.60207 * 4 2 1 6 6 N 1.34774 * 120.00100 * 213.60087 * 4 2 1 7 7 C 1.47022 * 125.65149 * 355.02501 * 6 4 2 8 8 C 1.54324 * 107.27324 * 178.97538 * 7 6 4 9 9 C 1.55158 * 102.94162 * 337.80849 * 8 7 6 10 10 H 1.09003 * 111.00189 * 277.42708 * 9 8 7 11 11 N 1.46494 * 111.00406 * 153.57802 * 9 8 7 12 12 C 1.46504 * 119.99801 * 301.45245 * 11 9 8 13 13 C 1.36936 * 120.00548 * 121.45285 * 11 9 8 14 14 H 1.08005 * 119.99715 * 24.62261 * 13 11 9 15 15 C 1.38810 * 120.00608 * 204.62543 * 13 11 9 16 16 N 1.31619 * 119.99364 * 9.78818 * 15 13 11 17 17 Si 1.86800 * 120.00296 * 189.78460 * 15 13 11 18 18 H 1.48501 * 109.46751 * 60.00298 * 17 15 13 19 19 H 1.48493 * 109.47023 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47139 * 300.00171 * 17 15 13 21 21 C 1.47432 * 125.64782 * 175.06343 * 6 4 2 22 22 C 1.50699 * 109.47243 * 240.00266 * 2 1 3 23 23 C 1.38234 * 119.99666 * 299.72079 * 22 2 1 24 24 C 1.38234 * 119.99671 * 179.78779 * 23 22 2 25 25 C 1.38231 * 120.00124 * 0.44335 * 24 23 22 26 26 C 1.38233 * 120.00186 * 359.81321 * 25 24 23 27 27 C 1.38230 * 119.99846 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46939 * 304.64572 * 1 2 3 29 29 H 1.08998 * 109.47211 * 64.64845 * 1 2 3 30 30 H 1.08998 * 109.46797 * 184.65170 * 1 2 3 31 31 H 1.09000 * 109.88013 * 59.55842 * 7 6 4 32 32 H 1.08992 * 109.88256 * 298.39645 * 7 6 4 33 33 H 1.08995 * 110.71899 * 96.16997 * 8 7 6 34 34 H 1.09003 * 110.72019 * 219.44432 * 8 7 6 35 35 H 1.08994 * 109.47132 * 85.52475 * 12 11 9 36 36 H 1.08996 * 109.46999 * 205.52217 * 12 11 9 37 37 H 1.08994 * 109.47316 * 325.52174 * 12 11 9 38 38 H 0.97000 * 119.99283 * 179.97438 * 16 15 13 39 39 H 1.08992 * 110.36402 * 322.94076 * 21 6 4 40 40 H 1.08998 * 110.36030 * 85.14634 * 21 6 4 41 41 H 1.08001 * 120.00177 * 359.97438 * 23 22 2 42 42 H 1.08003 * 120.00051 * 180.27593 * 24 23 22 43 43 H 1.08010 * 119.99972 * 179.83589 * 25 24 23 44 44 H 1.08002 * 120.00103 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00439 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.4098 -1.6454 1.6876 6 7 3.1736 -0.3065 1.8229 7 6 4.0769 0.7387 1.3199 8 6 5.2310 0.8745 2.3354 9 6 4.6177 0.2959 3.6379 10 1 4.0198 1.0463 4.1551 11 7 5.6606 -0.2388 4.5169 12 6 6.5475 -1.3022 4.0385 13 6 5.8065 0.2554 5.7856 14 1 4.9677 0.7177 6.2848 15 6 7.0323 0.1621 6.4302 16 7 8.0994 -0.2217 5.7622 17 14 7.1673 0.5815 8.2455 18 1 6.2812 -0.3170 9.0283 19 1 8.5725 0.4031 8.6915 20 1 6.7558 1.9921 8.4596 21 6 3.7233 -0.8404 3.0825 22 6 2.0323 -0.7103 -1.2305 23 6 1.7031 -2.0354 -1.4463 24 6 2.1603 -2.6858 -2.5772 25 6 2.9542 -2.0137 -3.4876 26 6 3.2878 -0.6901 -3.2691 27 6 2.8270 -0.0385 -2.1405 28 1 -0.3633 0.5843 0.8455 29 1 -0.3633 0.4400 -0.9287 30 1 -0.3633 -1.0243 0.0833 31 1 3.5410 1.6844 1.2392 32 1 4.4721 0.4499 0.3461 33 1 6.0929 0.2863 2.0205 34 1 5.5052 1.9209 2.4699 35 1 7.3858 -0.8611 3.4994 36 1 6.9220 -1.8727 4.8885 37 1 5.9946 -1.9641 3.3720 38 1 8.9561 -0.2865 6.2126 39 1 2.9185 -1.0661 3.7820 40 1 4.3179 -1.7331 2.8885 41 1 1.0863 -2.5617 -0.7329 42 1 1.8994 -3.7198 -2.7481 43 1 3.3136 -2.5226 -4.3699 44 1 3.9084 -0.1652 -3.9802 45 1 3.0879 0.9954 -1.9695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972759801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:23 Heat of formation + Delta-G solvation = 14.751942 kcal Electronic energy + Delta-G solvation = -24873.699251 eV Core-core repulsion = 21470.675504 eV Total energy + Delta-G solvation = -3403.023747 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.37404 -38.96661 -37.44868 -34.81738 -34.12821 -31.59894 -31.03000 -29.78570 -29.50321 -28.00676 -26.08460 -24.96089 -23.35150 -22.72173 -22.26829 -21.40598 -19.30077 -18.76124 -17.16277 -17.06534 -16.93660 -15.87539 -15.58250 -15.10561 -14.75498 -14.56168 -14.11524 -13.66688 -13.50394 -13.41973 -13.34609 -13.04922 -12.69463 -12.52567 -12.43926 -12.26204 -12.08195 -11.85483 -11.62028 -11.34575 -11.13862 -11.00652 -10.92919 -10.78092 -10.49523 -10.41882 -10.26409 -9.93379 -9.89544 -9.67950 -9.04329 -8.80140 -8.57080 -8.31806 -6.80056 -5.80063 -3.26932 1.17043 1.27880 2.79130 3.20269 3.36459 3.41903 3.43208 3.66215 4.44470 4.54544 4.57582 4.75082 4.86220 4.98541 5.03146 5.04676 5.15783 5.29737 5.35448 5.37993 5.44949 5.53023 5.55134 5.65645 5.73496 5.77853 5.85746 5.91891 5.93052 6.02926 6.07037 6.29071 6.32070 6.39134 6.40503 6.45865 6.57095 6.64269 6.83802 6.85645 6.88376 7.34518 7.65912 7.76245 7.80086 8.33654 8.37814 9.17449 9.78821 10.28519 11.26202 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.003251 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.141122 B = 8609.438921 C = 9013.497255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 H 0.095 0.905 4 C 0.534 3.466 5 O -0.545 6.545 6 N -0.610 5.610 7 C 0.102 3.898 8 C -0.152 4.152 9 C 0.173 3.827 10 H 0.077 0.923 11 N -0.585 5.585 12 C 0.159 3.841 13 C -0.261 4.261 14 H 0.069 0.931 15 C 0.006 3.994 16 N -0.906 5.906 17 Si 0.908 3.092 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.085 3.915 22 C -0.074 4.074 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.111 4.111 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.019 0.981 36 H 0.061 0.939 37 H -0.003 1.003 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.731 1.249 -17.845 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 H 0.114 0.886 4 C 0.322 3.678 5 O -0.422 6.422 6 N -0.343 5.343 7 C -0.022 4.022 8 C -0.192 4.192 9 C 0.063 3.937 10 H 0.096 0.904 11 N -0.305 5.305 12 C 0.014 3.986 13 C -0.390 4.390 14 H 0.087 0.913 15 C -0.193 4.193 16 N -0.551 5.551 17 Si 0.738 3.262 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.209 1.209 21 C -0.039 4.039 22 C -0.075 4.075 23 C -0.122 4.122 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.129 4.129 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.016 0.984 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.906 0.688 -17.523 20.651 hybrid contribution 0.418 0.303 0.849 0.993 sum -10.488 0.991 -16.674 19.723 Atomic orbital electron populations 1.21674 0.91672 1.03586 1.01977 1.20271 0.98094 0.99690 0.90866 0.88649 1.20014 0.79588 0.83789 0.84415 1.90665 1.57310 1.28780 1.65484 1.48490 1.22074 1.38529 1.25179 1.22089 0.91570 0.90376 0.98135 1.23218 0.96895 1.02477 0.96604 1.21415 0.90170 0.92453 0.89703 0.90434 1.43783 1.35312 1.39877 1.11512 1.20829 0.91162 0.89075 0.97498 1.19196 0.94566 1.35514 0.89758 0.91349 1.25063 0.95093 1.00455 0.98701 1.70050 0.98848 1.51401 1.34767 0.86285 0.76719 0.78391 0.84819 1.20941 1.21584 1.20866 1.22944 0.97678 0.99217 0.84085 1.19468 0.98426 0.94492 0.95069 1.21175 0.99517 0.94135 0.97349 1.21157 0.98180 0.99925 0.94509 1.21171 0.98486 0.94898 0.99427 1.21109 1.00169 0.94999 0.97620 1.21064 0.97528 0.99966 0.94381 0.91985 0.91785 0.91084 0.91942 0.92060 0.90558 0.90535 0.96271 0.92044 0.98445 0.93561 0.91076 0.91244 0.85394 0.86049 0.86187 0.85988 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.67 37.15 0.32 -1.08 16 2 C -0.07 -0.81 2.51 -92.93 -0.23 -1.04 16 3 H 0.10 0.96 6.69 -51.93 -0.35 0.62 16 4 C 0.53 8.51 6.49 -10.99 -0.07 8.44 16 5 O -0.54 -10.40 15.98 5.56 0.09 -10.31 16 6 N -0.61 -9.89 3.33 -170.53 -0.57 -10.45 16 7 C 0.10 1.40 6.22 -3.06 -0.02 1.38 16 8 C -0.15 -2.55 6.54 -24.90 -0.16 -2.72 16 9 C 0.17 3.45 3.54 -65.79 -0.23 3.22 16 10 H 0.08 1.55 7.95 -51.93 -0.41 1.13 16 11 N -0.58 -14.25 2.96 -171.04 -0.51 -14.76 16 12 C 0.16 3.84 7.99 59.85 0.48 4.32 16 13 C -0.26 -7.00 9.61 -15.06 -0.14 -7.15 16 14 H 0.07 1.79 7.84 -52.48 -0.41 1.38 16 15 C 0.01 0.15 5.10 -17.43 -0.09 0.06 16 16 N -0.91 -25.79 10.69 55.49 0.59 -25.20 16 17 Si 0.91 21.47 29.57 -169.99 -5.03 16.45 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.08 1.60 6.45 -2.53 -0.02 1.58 16 22 C -0.07 -0.87 4.77 -104.62 -0.50 -1.37 16 23 C -0.10 -1.27 8.85 -39.58 -0.35 -1.62 16 24 C -0.12 -1.27 10.05 -39.59 -0.40 -1.66 16 25 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 26 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 27 C -0.11 -1.13 9.67 -39.58 -0.38 -1.52 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.84 7.12 -51.93 -0.37 0.47 16 31 H 0.06 0.72 7.63 -51.93 -0.40 0.32 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.39 7.12 -51.93 -0.37 1.03 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.49 7.62 -51.93 -0.40 0.09 16 36 H 0.06 1.63 6.70 -51.93 -0.35 1.28 16 37 H 0.00 -0.06 6.01 -51.93 -0.31 -0.37 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 40 H 0.07 1.40 5.99 -51.93 -0.31 1.09 16 41 H 0.13 1.67 7.20 -52.49 -0.38 1.29 16 42 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 1.01 7.95 -52.49 -0.42 0.59 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -30.81 359.34 -9.58 -40.39 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.98 Total: 0.74 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.59 Total: -2.26 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.48 Total: -50.41 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.81 -9.58 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972759801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.138 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds