Wall clock time and date at job start Tue Mar 31 2020 08:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99996 * 2 1 4 4 C 1.52998 * 109.47127 * 66.04635 * 3 2 1 5 5 C 1.52996 * 109.47104 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47037 * 179.97438 * 5 4 3 7 7 C 1.35904 * 116.99892 * 179.97438 * 6 5 4 8 8 C 1.38726 * 120.05436 * 359.72708 * 7 6 5 9 9 C 1.38149 * 119.94315 * 179.73992 * 8 7 6 10 10 C 1.38268 * 120.05425 * 0.51247 * 9 8 7 11 11 C 1.38269 * 120.11119 * 359.76153 * 10 9 8 12 12 C 1.38143 * 120.05320 * 359.97438 * 11 10 9 13 13 C 1.46904 * 110.99877 * 236.04474 * 2 1 3 14 14 C 1.53002 * 109.46943 * 199.82575 * 13 2 1 15 15 H 1.08999 * 109.47475 * 305.15279 * 14 13 2 16 16 C 1.47203 * 109.46946 * 65.15639 * 14 13 2 17 17 N 3.66725 * 123.92294 * 157.44032 * 2 1 3 18 18 C 1.52998 * 109.46917 * 185.15316 * 14 13 2 19 19 C 1.50699 * 109.47109 * 175.00254 * 18 14 13 20 20 H 1.08002 * 120.00294 * 359.97438 * 19 18 14 21 21 C 1.37872 * 120.00195 * 180.02562 * 19 18 14 22 22 N 1.31522 * 120.00110 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47170 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47228 * 119.99759 * 23 21 19 26 26 H 1.48500 * 109.46850 * 239.99769 * 23 21 19 27 27 H 1.08996 * 109.46948 * 54.80717 * 1 2 3 28 28 H 1.09000 * 109.46902 * 174.79823 * 1 2 3 29 29 H 1.08994 * 109.46902 * 294.79947 * 1 2 3 30 30 H 1.08999 * 109.47006 * 186.04561 * 3 2 1 31 31 H 1.09000 * 109.47009 * 306.04398 * 3 2 1 32 32 H 1.09002 * 109.46890 * 300.00323 * 4 3 2 33 33 H 1.09003 * 109.47139 * 59.99526 * 4 3 2 34 34 H 1.08999 * 109.47030 * 299.99927 * 5 4 3 35 35 H 1.09000 * 109.47007 * 59.99778 * 5 4 3 36 36 H 1.08001 * 120.03102 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.97274 * 180.27526 * 9 8 7 38 38 H 1.07996 * 119.94428 * 179.74273 * 10 9 8 39 39 H 1.07996 * 119.97295 * 179.97438 * 11 10 9 40 40 H 1.08003 * 120.02503 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.47134 * 319.82550 * 13 2 1 42 42 H 1.09000 * 109.47008 * 79.82767 * 13 2 1 43 43 H 1.09007 * 109.47172 * 295.00147 * 18 14 13 44 44 H 1.09001 * 109.47113 * 55.00131 * 18 14 13 45 45 H 0.96999 * 120.00040 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1803 3.4856 1.3185 6 8 1.8399 4.1265 2.5495 7 6 2.2561 5.4099 2.7126 8 6 2.9822 6.0374 1.7109 9 6 3.3995 7.3439 1.8769 10 6 3.1031 8.0224 3.0446 11 6 2.3845 7.3972 4.0469 12 6 1.9602 6.0928 3.8834 13 6 1.9955 -0.7660 -1.1376 14 6 3.4451 -1.1662 -0.8559 15 1 4.0288 -0.2760 -0.6213 16 6 3.4849 -2.0941 0.2861 17 7 3.5156 -2.8102 1.1674 18 6 4.0341 -1.8514 -2.0905 19 6 5.4958 -2.1352 -1.8582 20 1 5.9585 -1.8545 -0.9235 21 6 6.2427 -2.7522 -2.8391 22 7 5.6795 -3.0936 -3.9775 23 14 8.0544 -3.1047 -2.5508 24 1 8.4428 -2.6265 -1.1997 25 1 8.2958 -4.5667 -2.6473 26 1 8.8650 -2.4004 -3.5766 27 1 -0.3633 0.5923 -0.8398 28 1 -0.3633 -1.0234 -0.0932 29 1 -0.3633 0.4310 0.9328 30 1 3.0797 1.3444 -0.1082 31 1 1.5612 1.9273 -0.8309 32 1 0.5472 2.0844 1.4265 33 1 2.0658 1.5015 2.1492 34 1 3.2646 3.4581 1.2105 35 1 1.7464 4.0417 0.4875 36 1 3.2177 5.5064 0.8005 37 1 3.9609 7.8344 1.0955 38 1 3.4338 9.0423 3.1742 39 1 2.1546 7.9292 4.9582 40 1 1.3993 5.6047 4.6668 41 1 1.3926 -1.6625 -1.2821 42 1 1.9562 -0.1528 -2.0379 43 1 3.5067 -2.7878 -2.2727 44 1 3.9240 -1.1980 -2.9560 45 1 6.2050 -3.5274 -4.6678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078875921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:43 Heat of formation + Delta-G solvation = 1.871294 kcal Electronic energy + Delta-G solvation = -23174.246250 eV Core-core repulsion = 19770.663956 eV Total energy + Delta-G solvation = -3403.582294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32855 -38.42218 -37.59858 -35.83937 -33.74335 -32.80168 -31.52759 -31.17676 -29.89212 -27.46292 -26.66420 -24.70645 -23.20562 -22.53571 -21.77331 -21.55252 -20.79493 -18.46835 -16.87710 -16.60466 -16.42013 -16.31071 -15.99184 -15.29304 -14.90732 -14.77002 -14.57640 -14.34597 -13.81730 -13.71832 -13.44706 -13.16532 -12.85489 -12.55474 -12.46471 -12.12605 -11.94718 -11.86030 -11.74441 -11.63009 -11.39832 -11.33210 -11.18650 -11.06460 -10.98268 -10.74412 -10.64250 -10.51198 -10.15667 -9.55318 -9.28667 -9.22694 -8.47565 -8.45757 -8.26715 -6.11246 -4.14237 1.05788 1.18296 2.89357 3.27368 3.35840 3.40601 3.52330 3.74266 3.84763 4.00279 4.40226 4.53645 4.61460 4.69582 4.84915 4.86393 4.90117 4.96270 5.09501 5.11378 5.20145 5.25460 5.27076 5.29000 5.40370 5.45420 5.53249 5.69844 5.72274 5.74088 5.88871 5.95409 5.98764 6.02845 6.12189 6.14095 6.25279 6.33793 6.48620 6.51009 7.09619 7.10585 7.20730 7.40576 7.51371 7.84405 8.21836 8.60120 8.90916 9.51461 10.99681 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.002575 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.474063 B =10872.223684 C =11999.558236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.115 4.115 5 C 0.060 3.940 6 O -0.314 6.314 7 C 0.134 3.866 8 C -0.210 4.210 9 C -0.080 4.080 10 C -0.164 4.164 11 C -0.082 4.082 12 C -0.156 4.156 13 C 0.062 3.938 14 C 0.012 3.988 15 H 0.099 0.901 16 C 0.257 3.743 17 N -0.480 5.480 18 C 0.030 3.970 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.037 0.963 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 21.139 8.696 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.153 4.153 5 C -0.015 4.015 6 O -0.228 6.228 7 C 0.088 3.912 8 C -0.228 4.228 9 C -0.098 4.098 10 C -0.182 4.182 11 C -0.100 4.100 12 C -0.174 4.174 13 C -0.067 4.067 14 C -0.010 4.010 15 H 0.116 0.884 16 C -0.060 4.060 17 N -0.157 5.157 18 C -0.008 4.008 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.531 5.531 23 Si 0.719 3.281 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.117 19.601 10.412 24.392 hybrid contribution 0.924 0.449 -1.284 1.644 sum -9.193 20.050 9.128 23.872 Atomic orbital electron populations 1.22424 0.87486 1.01910 1.00632 1.61932 1.07715 1.12945 1.44270 1.22043 1.01365 0.88453 0.95385 1.21513 1.02064 0.92240 0.99493 1.22822 1.00413 0.93753 0.84526 1.86063 1.73756 1.23490 1.39464 1.19066 0.93804 0.83963 0.94371 1.21341 1.04192 0.97101 1.00201 1.20986 0.97764 0.93712 0.97369 1.21066 1.02019 1.00518 0.94578 1.20969 0.96493 0.93755 0.98830 1.20476 1.05081 0.95068 0.96823 1.22273 0.95397 0.97919 0.91094 1.19221 0.95462 0.95218 0.91100 0.88371 1.28846 0.91217 0.92991 0.92974 1.80980 1.10405 1.11501 1.12836 1.19184 0.95839 0.96134 0.89663 1.21177 0.94282 1.39441 1.01384 0.92444 1.24957 0.98597 0.95367 0.95088 1.69949 1.36250 1.41104 1.05763 0.86542 0.85134 0.78116 0.78343 1.19648 1.20948 1.20870 0.95589 0.91403 0.91449 0.89725 0.94341 0.90879 0.89850 0.91552 0.92015 0.85266 0.85786 0.86022 0.85483 0.85261 0.90190 0.92538 0.95569 0.94492 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.23 60.07 0.55 0.81 16 2 N -0.54 -7.02 4.40 -242.92 -1.07 -8.08 16 3 C 0.06 0.60 4.78 -3.82 -0.02 0.59 16 4 C -0.12 -1.17 5.51 -26.73 -0.15 -1.32 16 5 C 0.06 0.58 4.74 37.16 0.18 0.75 16 6 O -0.31 -3.59 10.14 -19.44 -0.20 -3.79 16 7 C 0.13 1.44 6.69 -39.22 -0.26 1.18 16 8 C -0.21 -2.01 9.04 -39.43 -0.36 -2.37 16 9 C -0.08 -0.68 10.04 -39.60 -0.40 -1.07 16 10 C -0.16 -1.29 10.04 -39.56 -0.40 -1.69 16 11 C -0.08 -0.67 10.04 -39.60 -0.40 -1.06 16 12 C -0.16 -1.50 9.99 -39.43 -0.39 -1.90 16 13 C 0.06 0.89 4.36 -3.82 -0.02 0.87 16 14 C 0.01 0.22 2.27 -93.41 -0.21 0.01 16 15 H 0.10 1.67 6.67 -51.93 -0.35 1.32 16 16 C 0.26 5.37 13.67 -20.76 -0.28 5.09 16 17 N -0.48 -10.96 18.54 42.15 0.78 -10.18 16 18 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 19 C -0.52 -13.86 8.60 -34.44 -0.30 -14.16 16 20 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 23 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.03 0.25 8.07 -51.93 -0.42 -0.17 16 28 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 29 H 0.07 0.67 6.72 -51.93 -0.35 0.32 16 30 H 0.08 0.95 6.57 -51.93 -0.34 0.61 16 31 H 0.04 0.37 8.07 -51.93 -0.42 -0.05 16 32 H 0.07 0.72 6.67 -51.93 -0.35 0.37 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.60 7.65 -51.93 -0.40 0.21 16 35 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 36 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 37 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 41 H 0.08 1.16 7.74 -51.93 -0.40 0.76 16 42 H 0.06 0.74 8.00 -51.93 -0.42 0.33 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -31.16 376.64 -8.83 -39.99 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.07 Total: -3.07 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.67 Total: -12.11 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.45 Total: -42.89 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.20 Total: -3.79 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.16 -8.83 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078875921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.857 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds