Wall clock time and date at job start Tue Mar 31 2020 08:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00060 * 2 1 4 4 C 1.50702 * 109.47173 * 293.95622 * 3 2 1 5 5 H 1.08001 * 120.00371 * 359.97438 * 4 3 2 6 6 C 1.37885 * 120.00094 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99983 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00106 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47188 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47273 * 120.00062 * 8 6 4 11 11 H 1.48499 * 109.47261 * 240.00073 * 8 6 4 12 12 C 1.46897 * 111.00099 * 123.95760 * 2 1 3 13 13 C 1.50694 * 109.47390 * 66.04354 * 12 2 1 14 14 O 1.21283 * 120.00067 * 5.50965 * 13 12 2 15 15 N 1.34773 * 120.00115 * 185.50795 * 13 12 2 16 16 C 1.46505 * 120.00061 * 184.97728 * 15 13 12 17 17 C 1.50695 * 109.47062 * 270.00206 * 16 15 13 18 18 C 1.38237 * 120.00218 * 89.99891 * 17 16 15 19 19 C 1.38229 * 120.00237 * 180.02562 * 18 17 16 20 20 C 1.38238 * 119.99875 * 359.96667 * 19 18 17 21 21 C 1.38229 * 120.00185 * 0.26842 * 20 19 18 22 22 C 1.38233 * 119.99968 * 270.01962 * 17 16 15 23 23 C 1.46498 * 119.99918 * 4.98238 * 15 13 12 24 24 C 1.53000 * 117.49869 * 182.56859 * 23 15 13 25 25 C 1.52998 * 117.50210 * 113.90587 * 23 15 13 26 26 H 1.09003 * 109.46792 * 296.04743 * 1 2 3 27 27 H 1.09005 * 109.47146 * 56.04343 * 1 2 3 28 28 H 1.08994 * 109.47267 * 176.04312 * 1 2 3 29 29 H 1.08995 * 109.47740 * 53.95290 * 3 2 1 30 30 H 1.09004 * 109.47599 * 173.95819 * 3 2 1 31 31 H 0.96999 * 119.99919 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46874 * 306.04272 * 12 2 1 33 33 H 1.09004 * 109.47026 * 186.04664 * 12 2 1 34 34 H 1.09000 * 109.46920 * 149.99863 * 16 15 13 35 35 H 1.08998 * 109.46695 * 30.00463 * 16 15 13 36 36 H 1.08000 * 119.99637 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.00053 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99556 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.00391 * 179.73127 * 21 20 19 40 40 H 1.08001 * 120.00036 * 0.02562 * 22 17 16 41 41 H 1.09003 * 115.54922 * 328.22724 * 23 15 13 42 42 H 1.09003 * 117.50084 * 359.97438 * 24 23 15 43 43 H 1.08998 * 117.50411 * 145.01590 * 24 23 15 44 44 H 1.08997 * 117.49918 * 214.97473 * 25 23 15 45 45 H 1.08997 * 117.49448 * 359.97438 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0268 3.3496 -1.5285 7 7 2.7120 4.0020 -0.6150 8 14 1.5829 4.1869 -3.1382 9 1 0.8167 3.2438 -3.9919 10 1 0.7550 5.3877 -2.8597 11 1 2.8248 4.5945 -3.8430 12 6 1.9955 -0.7660 1.1375 13 6 1.6370 -2.2204 0.9728 14 8 1.0934 -2.5997 -0.0429 15 7 1.9204 -3.0997 1.9541 16 6 1.6721 -4.5292 1.7510 17 6 0.2731 -4.8647 2.1994 18 6 -0.7764 -4.7911 1.3027 19 6 -2.0598 -5.0984 1.7142 20 6 -2.2936 -5.4799 3.0221 21 6 -1.2449 -5.5487 3.9200 22 6 0.0392 -5.2456 3.5074 23 6 2.4767 -2.6260 3.2238 24 6 2.8332 -3.6786 4.2754 25 6 1.6106 -2.7795 4.4757 26 1 -0.3633 0.4513 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3633 -1.0251 -0.0709 29 1 1.5612 1.9274 0.8308 30 1 3.0798 1.3444 0.1082 31 1 2.9865 4.9181 -0.7770 32 1 1.5612 -0.3873 2.0627 33 1 3.0798 -0.6611 1.1755 34 1 2.3890 -5.1087 2.3327 35 1 1.7826 -4.7705 0.6938 36 1 -0.5937 -4.4936 0.2807 37 1 -2.8798 -5.0405 1.0138 38 1 -3.2964 -5.7195 3.3436 39 1 -1.4282 -5.8426 4.9430 40 1 0.8591 -5.3023 4.2082 41 1 3.1143 -1.7443 3.1580 42 1 2.6535 -4.7236 4.0226 43 1 3.7051 -3.4893 4.9016 44 1 1.6787 -1.9992 5.2336 45 1 0.6267 -3.2326 4.3544 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:41 Heat of formation + Delta-G solvation = 37.933894 kcal Electronic energy + Delta-G solvation = -24856.494438 eV Core-core repulsion = 21454.475936 eV Total energy + Delta-G solvation = -3402.018502 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.43593 -38.89026 -37.47933 -35.88655 -33.67872 -32.49317 -31.66941 -30.96071 -28.52731 -27.00806 -26.03218 -23.92058 -22.77485 -22.67110 -22.49132 -21.54074 -20.46463 -18.72697 -17.36036 -17.05559 -16.32512 -15.96662 -15.58351 -15.10419 -15.00441 -14.90060 -14.45522 -14.02070 -13.90484 -13.73649 -13.43609 -13.15807 -12.99096 -12.56204 -12.26876 -12.11009 -11.77080 -11.66394 -11.53651 -11.34862 -11.02661 -10.98502 -10.94673 -10.82964 -10.76591 -10.62729 -10.46179 -9.94076 -9.48440 -9.13701 -8.98790 -8.81148 -8.46939 -8.41439 -7.19788 -6.01098 -4.01317 1.16828 1.31177 2.87204 2.96140 3.33772 3.40964 3.47528 3.64993 3.75696 4.43203 4.51171 4.61295 4.65173 4.69425 4.78906 4.88008 4.89155 5.02356 5.11601 5.22688 5.31357 5.35435 5.44080 5.57305 5.58167 5.64670 5.75594 5.80973 5.86158 5.89361 5.93682 5.97160 6.31857 6.33264 6.41334 6.43321 6.51137 6.55157 6.89898 6.90994 7.24432 7.32561 7.46372 7.83171 8.06953 8.20883 8.47375 8.58529 9.07122 9.62732 11.10070 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.003391 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.101533 B = 8254.200827 C = 9009.591274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.522 5.522 3 C 0.193 3.807 4 C -0.503 4.503 5 H 0.066 0.934 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.041 3.959 13 C 0.523 3.477 14 O -0.510 6.510 15 N -0.591 5.591 16 C 0.151 3.849 17 C -0.104 4.104 18 C -0.092 4.092 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.113 4.113 23 C 0.076 3.924 24 C -0.188 4.188 25 C -0.200 4.200 26 H 0.004 0.996 27 H 0.074 0.926 28 H 0.059 0.941 29 H -0.008 1.008 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -19.765 13.256 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.247 5.247 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.084 0.916 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.091 4.091 13 C 0.312 3.688 14 O -0.383 6.383 15 N -0.324 5.324 16 C 0.029 3.971 17 C -0.105 4.105 18 C -0.110 4.110 19 C -0.141 4.141 20 C -0.138 4.138 21 C -0.146 4.146 22 C -0.131 4.131 23 C -0.030 4.030 24 C -0.226 4.226 25 C -0.238 4.238 26 H 0.023 0.977 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.494 -19.992 12.230 23.695 hybrid contribution -0.457 1.019 0.197 1.134 sum -3.951 -18.973 12.427 23.022 Atomic orbital electron populations 1.22299 0.88169 1.00765 0.99954 1.61851 1.07665 1.17241 1.37951 1.19782 0.95317 0.81127 0.96931 1.21204 1.34582 0.96799 1.01609 0.91631 1.24984 0.95325 0.97308 0.97060 1.69966 1.38619 1.11403 1.34074 0.86426 0.78152 0.79251 0.83537 1.19579 1.21142 1.21017 1.21972 1.01749 0.90287 0.95107 1.20973 0.77514 0.88279 0.82016 1.90635 1.40114 1.79331 1.28204 1.47552 1.64543 1.06216 1.14117 1.20348 0.92241 0.81673 1.02856 1.20269 0.96334 0.99890 0.94044 1.21299 0.92196 0.97088 1.00436 1.21206 0.97058 0.99664 0.96197 1.21160 0.98916 0.99925 0.93783 1.21086 0.92950 1.01127 0.99457 1.21131 0.97136 0.99523 0.95349 1.21757 1.00858 1.00051 0.80295 1.23391 1.00140 0.96939 1.02084 1.23649 0.96555 1.03125 1.00494 0.97733 0.90712 0.92252 0.99034 0.95202 0.93023 0.93246 0.88531 0.89704 0.88893 0.85128 0.86119 0.86353 0.86293 0.85977 0.85034 0.88152 0.87732 0.88136 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.03 60.07 0.54 1.34 16 2 N -0.52 -11.98 4.45 -245.83 -1.10 -13.07 16 3 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 4 C -0.50 -14.49 8.46 -34.44 -0.29 -14.78 16 5 H 0.07 1.90 7.12 -52.49 -0.37 1.53 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.04 0.74 3.97 -4.98 -0.02 0.72 16 13 C 0.52 8.91 7.27 -10.99 -0.08 8.83 16 14 O -0.51 -10.18 13.42 5.55 0.07 -10.11 16 15 N -0.59 -7.66 2.78 -167.47 -0.47 -8.12 16 16 C 0.15 1.72 5.05 -5.19 -0.03 1.70 16 17 C -0.10 -1.20 5.27 -104.63 -0.55 -1.76 16 18 C -0.09 -1.17 9.57 -39.59 -0.38 -1.55 16 19 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 20 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 21 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 22 C -0.11 -1.11 7.01 -39.58 -0.28 -1.38 16 23 C 0.08 0.78 5.77 -67.93 -0.39 0.39 16 24 C -0.19 -1.43 9.21 -26.69 -0.25 -1.67 16 25 C -0.20 -1.81 9.74 -26.69 -0.26 -2.07 16 26 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.07 1.72 6.76 -51.93 -0.35 1.37 16 28 H 0.06 1.24 6.08 -51.93 -0.32 0.92 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.05 0.85 7.83 -51.93 -0.41 0.44 16 33 H 0.10 1.65 7.76 -51.93 -0.40 1.25 16 34 H 0.08 0.75 5.95 -51.93 -0.31 0.44 16 35 H 0.09 1.18 7.44 -51.93 -0.39 0.79 16 36 H 0.13 1.85 7.39 -52.49 -0.39 1.46 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.98 5.44 -52.49 -0.29 0.69 16 41 H 0.13 1.31 7.14 -51.93 -0.37 0.94 16 42 H 0.10 0.70 4.58 -51.93 -0.24 0.47 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.10 1.07 5.36 -51.93 -0.28 0.79 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -32.74 357.31 -10.29 -43.04 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.61 Total: 0.65 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.29 Total: -8.66 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.83 Total: -47.31 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.74 -10.29 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.970 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds