Wall clock time and date at job start Tue Mar 31 2020 08:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99930 * 2 1 4 4 N 1.46500 * 109.47104 * 125.00117 * 3 2 1 5 5 C 1.46498 * 120.00251 * 272.98073 * 4 3 2 6 6 C 1.50697 * 109.46917 * 270.00161 * 5 4 3 7 7 H 1.08002 * 120.00171 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99698 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00166 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99964 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46949 * 89.99962 * 10 8 6 12 12 H 1.48496 * 109.47618 * 210.00053 * 10 8 6 13 13 H 1.48504 * 109.47066 * 330.00262 * 10 8 6 14 14 C 1.34780 * 119.99858 * 92.98037 * 4 3 2 15 15 O 1.21284 * 120.00016 * 184.69713 * 14 4 3 16 16 C 1.50704 * 120.00151 * 4.69335 * 14 4 3 17 17 H 1.08998 * 109.46845 * 327.68251 * 16 14 4 18 18 C 1.50702 * 109.46956 * 87.67911 * 16 14 4 19 19 C 1.38232 * 119.99994 * 252.45460 * 18 16 14 20 20 C 1.38242 * 119.99907 * 179.80943 * 19 18 16 21 21 C 1.38236 * 119.99944 * 0.39489 * 20 19 18 22 22 C 1.38235 * 119.99963 * 359.85822 * 21 20 19 23 23 C 1.38232 * 119.99838 * 359.95369 * 22 21 20 24 24 N 1.46899 * 109.47261 * 207.67903 * 16 14 4 25 25 C 1.46898 * 110.99878 * 62.71432 * 24 16 14 26 26 C 1.46893 * 110.99886 * 186.67252 * 24 16 14 27 27 H 1.07999 * 120.00178 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99846 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00581 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47384 * 5.00025 * 3 2 1 31 31 H 1.09005 * 109.47236 * 245.00056 * 3 2 1 32 32 H 1.09004 * 109.46769 * 29.99697 * 5 4 3 33 33 H 1.08997 * 109.47260 * 149.99835 * 5 4 3 34 34 H 0.97000 * 120.00298 * 180.02562 * 9 8 6 35 35 H 1.08005 * 120.00241 * 359.97438 * 19 18 16 36 36 H 1.08001 * 119.99628 * 180.23007 * 20 19 18 37 37 H 1.08000 * 119.99758 * 179.83412 * 21 20 19 38 38 H 1.07993 * 120.00065 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.00034 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47033 * 183.95383 * 25 24 16 41 41 H 1.09007 * 109.46513 * 63.95973 * 25 24 16 42 42 H 1.08993 * 109.47443 * 303.95388 * 25 24 16 43 43 H 1.09003 * 109.47391 * 293.33403 * 26 24 16 44 44 H 1.09008 * 109.47410 * 53.33721 * 26 24 16 45 45 H 1.08999 * 109.47452 * 173.33425 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5400 1.8041 2.4419 6 6 2.7659 3.2903 2.5461 7 1 3.2040 3.8293 1.7191 8 6 2.4131 3.9621 3.6974 9 7 1.8800 3.3058 4.7046 10 14 2.6937 5.8044 3.8269 11 1 1.4915 6.5240 3.3350 12 1 2.9430 6.1687 5.2448 13 1 3.8697 6.1851 3.0039 14 6 4.2672 0.9222 0.9666 15 8 5.0136 0.8635 1.9208 16 6 4.7635 0.5369 -0.4031 17 1 3.9454 0.1014 -0.9768 18 6 5.2789 1.7620 -1.1136 19 6 4.5573 2.3106 -2.1572 20 6 5.0281 3.4366 -2.8063 21 6 6.2245 4.0093 -2.4171 22 6 6.9488 3.4576 -1.3769 23 6 6.4760 2.3338 -0.7253 24 7 5.8476 -0.4458 -0.2727 25 6 5.3650 -1.6812 0.3590 26 6 6.4631 -0.7268 -1.5765 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4776 1.5890 2.5576 33 1 3.1012 1.2954 3.2257 34 1 1.6315 3.7784 5.5144 35 1 3.6243 1.8610 -2.4637 36 1 4.4623 3.8674 -3.6193 37 1 6.5936 4.8874 -2.9261 38 1 7.8837 3.9047 -1.0732 39 1 7.0420 1.9025 0.0871 40 1 6.2015 -2.3641 0.5073 41 1 4.6215 -2.1517 -0.2845 42 1 4.9141 -1.4444 1.3226 43 1 5.7417 -1.2342 -2.2171 44 1 6.7683 0.2096 -2.0436 45 1 7.3360 -1.3643 -1.4364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293940468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:00 Heat of formation + Delta-G solvation = 32.315714 kcal Electronic energy + Delta-G solvation = -25782.629253 eV Core-core repulsion = 22380.367129 eV Total energy + Delta-G solvation = -3402.262125 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.23157 -38.38487 -36.62023 -35.52980 -33.16332 -32.18072 -31.59545 -30.73424 -28.36431 -27.30513 -26.73592 -25.36445 -23.23909 -22.56597 -22.19440 -20.86666 -19.87250 -18.33517 -16.99807 -16.50536 -16.43024 -15.94619 -15.51041 -15.01142 -14.62047 -14.38113 -14.29392 -14.22069 -14.01383 -13.42515 -13.17104 -12.94506 -12.64131 -12.51393 -12.23214 -12.17836 -11.91259 -11.85399 -11.62138 -11.46845 -11.24836 -11.07061 -10.87295 -10.84768 -10.75008 -10.56572 -10.15718 -9.62160 -9.21939 -9.15299 -8.72957 -8.40845 -8.40029 -8.15840 -7.64224 -6.01389 -4.05690 1.43764 1.58668 2.42331 3.31656 3.37217 3.39225 3.45120 3.70686 3.91833 4.33625 4.49467 4.82523 4.94251 5.11374 5.12369 5.22190 5.25326 5.27982 5.33063 5.37007 5.38985 5.42971 5.56560 5.64056 5.67492 5.69382 5.80321 5.91763 6.00002 6.07619 6.12435 6.19390 6.22822 6.56750 6.68335 6.71554 6.76930 6.88181 6.97977 7.08887 7.15391 7.19693 7.47993 7.58512 7.95774 8.26874 8.43086 8.93825 9.12884 9.59316 11.06701 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.006123 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.906870 B = 4571.579048 C = 5551.585355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.131 3.869 4 N -0.592 5.592 5 C 0.249 3.751 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.518 3.482 15 O -0.517 6.517 16 C 0.104 3.896 17 H 0.062 0.938 18 C -0.073 4.073 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.079 4.079 24 N -0.519 5.519 25 C 0.024 3.976 26 C 0.024 3.976 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.134 0.866 40 H 0.070 0.930 41 H 0.021 0.979 42 H 0.077 0.923 43 H 0.022 0.978 44 H 0.072 0.928 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 -6.125 -16.848 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.189 4.189 3 C 0.007 3.993 4 N -0.324 5.324 5 C 0.130 3.870 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.303 3.697 15 O -0.392 6.392 16 C -0.007 4.007 17 H 0.080 0.920 18 C -0.074 4.074 19 C -0.132 4.132 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.097 4.097 24 N -0.243 5.243 25 C -0.123 4.123 26 C -0.124 4.124 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.152 0.848 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.665 -5.927 -15.791 17.500 hybrid contribution -0.702 0.694 -0.363 1.052 sum 3.963 -5.233 -16.154 17.436 Atomic orbital electron populations 1.23818 0.95774 1.01801 1.00355 1.23418 0.96449 0.98907 1.00114 1.20693 0.93254 0.95313 0.90049 1.48186 1.08811 1.62808 1.12547 1.19262 0.95183 0.94473 0.78094 1.21439 1.41097 0.92931 1.00850 0.92457 1.24913 0.95118 0.98527 0.95432 1.69933 1.42409 1.35916 1.05119 0.86538 0.78538 0.85288 0.77349 1.20666 1.21088 1.19844 1.19852 0.82334 0.78396 0.89109 1.90667 1.54780 1.52533 1.41195 1.20657 0.92955 0.91803 0.95308 0.92013 1.19358 0.95775 0.96278 0.95939 1.21003 0.99334 0.96908 0.95956 1.21004 0.96550 0.96224 1.00352 1.21130 0.95372 0.99682 0.97572 1.21172 1.00267 0.96327 0.96425 1.21141 0.95347 0.94617 0.98596 1.61655 1.29745 1.10588 1.22359 1.22429 0.99424 0.90596 0.99898 1.22447 0.98825 1.01719 0.89414 0.88750 0.88201 0.88057 0.89501 0.90760 0.95024 0.93811 0.92772 0.86237 0.86171 0.86374 0.86118 0.84828 0.91088 0.96056 0.90404 0.95923 0.90909 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 14.32 29.01 0.42 -1.95 16 2 C -0.17 -2.48 9.73 -36.02 -0.35 -2.83 16 3 C 0.13 2.20 5.49 -5.19 -0.03 2.18 16 4 N -0.59 -12.75 2.44 -176.43 -0.43 -13.18 16 5 C 0.25 6.59 5.21 -5.20 -0.03 6.57 16 6 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 10 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.52 11.03 5.68 -10.98 -0.06 10.97 16 15 O -0.52 -13.17 15.34 5.55 0.09 -13.08 16 16 C 0.10 1.71 1.35 -70.01 -0.09 1.62 16 17 H 0.06 0.91 6.18 -51.93 -0.32 0.59 16 18 C -0.07 -1.14 3.36 -104.62 -0.35 -1.49 16 19 C -0.11 -1.54 8.88 -39.58 -0.35 -1.89 16 20 C -0.12 -1.53 10.05 -39.58 -0.40 -1.92 16 21 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 23 C -0.08 -1.27 8.33 -39.58 -0.33 -1.60 16 24 N -0.52 -7.93 4.16 -246.00 -1.02 -8.95 16 25 C 0.02 0.35 9.32 60.06 0.56 0.91 16 26 C 0.02 0.29 9.26 60.06 0.56 0.84 16 27 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.10 1.29 7.84 -52.48 -0.41 0.88 16 29 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.09 1.52 7.75 -51.93 -0.40 1.12 16 31 H 0.07 1.08 3.78 -51.93 -0.20 0.89 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.12 1.38 6.64 -52.48 -0.35 1.03 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.13 2.35 7.94 -52.49 -0.42 1.94 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 1.33 6.51 -51.93 -0.34 0.99 16 43 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.89 6.04 -51.92 -0.31 0.57 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -33.26 369.09 -8.67 -41.93 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.90 Total: 2.94 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.68 Total: -6.29 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.72 Total: -48.25 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.26 -8.67 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293940468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.246 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds