Wall clock time and date at job start Tue Mar 31 2020 07:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47134 * 2 1 4 4 C 1.34786 * 119.99711 * 270.00067 * 3 2 1 5 5 O 1.21688 * 119.99334 * 179.97438 * 4 3 2 6 6 C 1.46370 * 120.00240 * 0.02562 * 4 3 2 7 7 H 1.07999 * 120.00072 * 355.03599 * 6 4 3 8 8 C 1.40047 * 120.00261 * 175.03826 * 6 4 3 9 9 N 1.30678 * 119.99917 * 6.22297 * 8 6 4 10 10 Si 1.86796 * 120.00294 * 186.21811 * 8 6 4 11 11 H 1.48502 * 109.46758 * 94.98730 * 10 8 6 12 12 H 1.48504 * 109.47360 * 214.98184 * 10 8 6 13 13 H 1.48492 * 109.47307 * 334.98638 * 10 8 6 14 14 C 1.46492 * 120.00274 * 90.00383 * 3 2 1 15 15 H 1.09007 * 110.87592 * 2.38796 * 14 3 2 16 16 C 1.55143 * 110.99316 * 238.54498 * 14 3 2 17 17 C 1.54320 * 103.02110 * 206.25334 * 16 14 3 18 18 N 1.47442 * 107.22943 * 22.28122 * 17 16 14 19 19 C 1.46904 * 110.99528 * 123.25848 * 18 17 16 20 20 C 1.50701 * 109.47016 * 69.87265 * 19 18 17 21 21 C 1.38240 * 120.00070 * 269.72379 * 20 19 18 22 22 C 1.38233 * 119.99870 * 179.76533 * 21 20 19 23 23 C 1.38240 * 120.00240 * 0.48844 * 22 21 20 24 24 C 1.38239 * 119.99743 * 359.78922 * 23 22 21 25 25 C 1.38233 * 120.00047 * 359.95702 * 24 23 22 26 26 C 1.47841 * 108.57117 * 0.99412 * 18 17 16 27 27 H 1.09007 * 109.46543 * 299.99948 * 1 2 3 28 28 H 1.09001 * 109.47485 * 59.99430 * 1 2 3 29 29 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46543 * 240.00052 * 2 1 3 31 31 H 1.08993 * 109.47217 * 120.00415 * 2 1 3 32 32 H 0.96991 * 119.99877 * 179.97438 * 9 8 6 33 33 H 1.09004 * 110.70412 * 87.87099 * 16 14 3 34 34 H 1.08996 * 110.70520 * 324.63823 * 16 14 3 35 35 H 1.09003 * 109.88418 * 262.87665 * 17 16 14 36 36 H 1.09002 * 109.88722 * 141.69045 * 17 16 14 37 37 H 1.08996 * 109.47352 * 309.87545 * 19 18 17 38 38 H 1.08999 * 109.47174 * 189.86828 * 19 18 17 39 39 H 1.07998 * 119.99504 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.99716 * 180.25471 * 22 21 20 41 41 H 1.07995 * 120.00134 * 179.76518 * 23 22 21 42 42 H 1.07991 * 119.99724 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99799 * 180.02562 * 25 24 23 44 44 H 1.08997 * 110.37686 * 94.73284 * 26 18 17 45 45 H 1.09003 * 110.37049 * 217.07535 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1673 5 8 2.6482 3.1640 -1.1672 6 6 1.9985 1.3267 -2.4349 7 1 1.7154 0.2845 -2.4367 8 6 2.1317 2.0181 -3.6455 9 7 2.5909 3.2416 -3.6521 10 14 1.6531 1.1916 -5.2508 11 1 0.2582 1.5614 -5.6013 12 1 2.5697 1.6386 -6.3303 13 1 1.7507 -0.2821 -5.0971 14 6 2.2626 2.0718 1.2686 15 1 2.0737 1.4099 2.1139 16 6 1.4085 3.3628 1.3721 17 6 2.2337 4.2500 2.3278 18 7 3.6262 3.7677 2.2784 19 6 4.5442 4.8483 1.8943 20 6 4.6382 5.8501 3.0163 21 6 3.7689 6.9241 3.0586 22 6 3.8521 7.8403 4.0904 23 6 4.8110 7.6880 5.0745 24 6 5.6839 6.6171 5.0290 25 6 5.5974 5.6981 4.0001 26 6 3.7014 2.6435 1.3212 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.6834 3.7203 -4.4905 33 1 0.4294 3.1440 1.7983 34 1 1.3078 3.8375 0.3961 35 1 1.8465 4.1616 3.3429 36 1 2.1892 5.2888 2.0007 37 1 4.1698 5.3416 0.9974 38 1 5.5318 4.4324 1.6950 39 1 3.0228 7.0455 2.2874 40 1 3.1703 8.6771 4.1257 41 1 4.8783 8.4059 5.8785 42 1 6.4333 6.4984 5.7975 43 1 6.2792 4.8612 3.9648 44 1 4.0034 3.0023 0.3373 45 1 4.3979 1.8857 1.6800 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368376321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:56 Heat of formation + Delta-G solvation = 0.144472 kcal Electronic energy + Delta-G solvation = -25078.344363 eV Core-core repulsion = 21674.687189 eV Total energy + Delta-G solvation = -3403.657174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.59435 -38.69107 -36.74613 -34.28983 -32.78154 -32.34967 -30.82775 -29.95137 -29.07129 -27.62963 -26.06569 -24.85757 -22.50535 -22.35251 -21.36904 -21.20359 -20.02841 -18.71397 -16.62247 -16.42962 -15.85815 -15.63426 -15.23432 -15.03895 -14.71678 -14.12554 -13.89455 -13.36490 -13.34922 -13.26829 -12.88850 -12.79824 -12.57455 -12.45177 -12.23352 -11.99941 -11.51629 -11.38042 -11.28339 -11.11198 -11.02018 -10.81636 -10.75222 -10.61536 -10.52630 -10.42147 -10.28249 -10.22379 -9.80699 -8.87662 -8.82232 -8.66707 -7.88623 -7.42777 -7.21256 -6.22315 -4.66522 1.44467 1.49667 3.10099 3.18400 3.20866 3.82400 4.04464 4.34506 4.50744 4.79578 4.92349 4.98206 5.07137 5.19204 5.31431 5.41649 5.49299 5.61683 5.65523 5.73031 5.75706 5.82238 5.83672 5.96926 6.06006 6.11392 6.14318 6.15779 6.17917 6.22112 6.30371 6.43770 6.53856 6.57118 6.61095 6.65780 6.78289 6.84409 6.87786 6.99785 7.09467 7.39673 7.42165 7.51220 7.66493 8.15715 8.34572 8.99734 9.41057 10.53620 10.72722 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.003634 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.075821 B = 7703.587674 C = 8438.327564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 N -0.636 5.636 4 C 0.561 3.439 5 O -0.571 6.571 6 C -0.543 4.543 7 H 0.072 0.928 8 C 0.089 3.911 9 N -0.766 5.766 10 Si 0.903 3.097 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.157 3.843 15 H 0.074 0.926 16 C -0.154 4.154 17 C 0.050 3.950 18 N -0.521 5.521 19 C 0.087 3.913 20 C -0.064 4.064 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.102 4.102 26 C 0.023 3.977 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.267 0.733 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.089 0.911 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 2.269 12.728 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.373 5.373 4 C 0.367 3.633 5 O -0.455 6.455 6 C -0.580 4.580 7 H 0.090 0.910 8 C -0.131 4.131 9 N -0.395 5.395 10 Si 0.727 3.273 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.189 1.189 14 C 0.050 3.950 15 H 0.093 0.907 16 C -0.193 4.193 17 C -0.078 4.078 18 N -0.245 5.245 19 C -0.041 4.041 20 C -0.064 4.064 21 C -0.132 4.132 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.121 4.121 26 C -0.105 4.105 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.108 0.892 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.873 2.874 13.087 13.529 hybrid contribution -0.645 -0.195 -1.505 1.649 sum 1.229 2.679 11.581 11.950 Atomic orbital electron populations 1.22191 0.97795 1.00330 1.02106 1.21175 0.93168 0.84483 1.01131 1.48001 1.71117 1.13227 1.04946 1.18133 0.77312 0.85776 0.82049 1.90522 1.50104 1.18576 1.86279 1.21034 1.49608 0.97901 0.89415 0.91036 1.25699 0.92810 0.94449 1.00102 1.70013 1.32320 1.09995 1.27124 0.86436 0.78870 0.80317 0.81641 1.19867 1.20513 1.18876 1.21612 0.93371 0.92802 0.87174 0.90737 1.23183 0.97687 0.97136 1.01326 1.22710 0.88425 0.97962 0.98734 1.63632 1.05368 1.07351 1.48105 1.21185 0.98008 0.91154 0.93741 1.19906 0.95134 0.95027 0.96381 1.21162 0.98770 0.94587 0.98633 1.21090 0.98788 0.99242 0.94951 1.21073 0.96310 0.98365 0.98968 1.21102 0.99432 0.95186 0.98546 1.21032 0.98421 0.98622 0.93976 1.23524 0.97731 0.92513 0.96719 0.93762 0.91755 0.93323 0.90265 0.93338 0.92221 0.92483 0.88782 0.91742 0.93056 0.92947 0.90422 0.86217 0.86413 0.86577 0.86433 0.86128 0.89248 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.25 5.86 -4.04 -0.02 2.23 16 3 N -0.64 -13.75 2.56 -165.33 -0.42 -14.17 16 4 C 0.56 14.88 6.88 -12.99 -0.09 14.79 16 5 O -0.57 -16.78 11.07 5.20 0.06 -16.72 16 6 C -0.54 -14.55 8.76 -35.63 -0.31 -14.87 16 7 H 0.07 1.78 5.95 -52.49 -0.31 1.46 16 8 C 0.09 2.40 5.49 -17.36 -0.10 2.30 16 9 N -0.77 -22.04 11.85 55.55 0.66 -21.38 16 10 Si 0.90 19.65 29.56 -169.99 -5.03 14.62 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 14 C 0.16 3.03 3.55 -65.79 -0.23 2.79 16 15 H 0.07 1.29 7.87 -51.92 -0.41 0.88 16 16 C -0.15 -2.95 6.31 -24.91 -0.16 -3.11 16 17 C 0.05 0.85 6.27 -2.84 -0.02 0.84 16 18 N -0.52 -9.10 5.15 -232.69 -1.20 -10.30 16 19 C 0.09 1.44 4.75 -4.97 -0.02 1.42 16 20 C -0.06 -0.93 5.10 -104.62 -0.53 -1.47 16 21 C -0.11 -1.56 8.74 -39.58 -0.35 -1.90 16 22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 23 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 24 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 26 C 0.02 0.46 6.04 -2.30 -0.01 0.44 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.50 6.04 -51.93 -0.31 1.18 16 31 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 32 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 2.21 6.12 -51.93 -0.32 1.89 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.87 5.52 -51.93 -0.29 0.59 16 37 H 0.05 0.98 7.90 -51.93 -0.41 0.57 16 38 H 0.08 1.24 8.02 -51.93 -0.42 0.83 16 39 H 0.12 1.64 6.94 -52.49 -0.36 1.28 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.09 2.12 5.33 -51.93 -0.28 1.85 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -30.69 356.34 -10.48 -41.18 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.88 Total: 7.51 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.04 Total: -6.10 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.96 Total: -45.85 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.06 Total: -16.72 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.69 -10.48 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368376321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.320 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds