Wall clock time and date at job start Tue Mar 31 2020 08:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99515 * 2 1 4 4 C 1.46897 * 110.99767 * 123.94846 * 2 1 3 5 5 C 1.50702 * 109.47060 * 66.05144 * 4 2 1 6 6 C 1.37976 * 120.07119 * 260.02030 * 5 4 2 7 7 C 1.38342 * 120.14520 * 179.97438 * 6 5 4 8 8 C 1.38380 * 120.28902 * 359.78666 * 7 6 5 9 9 C 1.37928 * 120.14606 * 0.46766 * 8 7 6 10 10 C 1.39559 * 120.07575 * 79.99290 * 5 4 2 11 11 C 1.47846 * 120.14327 * 0.04931 * 10 5 4 12 12 O 1.21551 * 119.99804 * 353.21730 * 11 10 5 13 13 N 1.34771 * 119.99864 * 173.21839 * 11 10 5 14 14 C 1.46506 * 119.99699 * 185.07797 * 13 11 10 15 15 C 1.52998 * 109.46924 * 183.67991 * 14 13 11 16 16 C 1.50706 * 115.55280 * 305.89532 * 15 14 13 17 17 H 1.08002 * 119.99718 * 144.13357 * 16 15 14 18 18 C 1.37874 * 119.99592 * 324.13383 * 16 15 14 19 19 N 1.31513 * 120.00129 * 349.05205 * 18 16 15 20 20 Si 1.86799 * 119.99931 * 169.05661 * 18 16 15 21 21 H 1.48498 * 109.47151 * 89.99538 * 20 18 16 22 22 H 1.48500 * 109.47439 * 209.99831 * 20 18 16 23 23 H 1.48503 * 109.46949 * 329.99747 * 20 18 16 24 24 C 1.52997 * 117.50007 * 160.22141 * 15 14 13 25 25 C 1.53000 * 117.49914 * 91.56195 * 15 14 13 26 26 H 1.08995 * 109.47389 * 296.04865 * 1 2 3 27 27 H 1.09002 * 109.47160 * 56.04922 * 1 2 3 28 28 H 1.09007 * 109.46908 * 176.04757 * 1 2 3 29 29 H 1.09002 * 109.46612 * 183.95579 * 3 2 1 30 30 H 1.09005 * 109.47064 * 303.94846 * 3 2 1 31 31 H 1.09001 * 109.47794 * 63.95472 * 3 2 1 32 32 H 1.08999 * 109.47307 * 306.05084 * 4 2 1 33 33 H 1.09001 * 109.46873 * 186.04784 * 4 2 1 34 34 H 1.08003 * 119.93217 * 359.97418 * 6 5 4 35 35 H 1.07999 * 119.85332 * 180.02562 * 7 6 5 36 36 H 1.08008 * 119.92443 * 180.23250 * 8 7 6 37 37 H 1.08008 * 120.07314 * 179.79056 * 9 8 7 38 38 H 0.96996 * 120.00382 * 5.06804 * 13 11 10 39 39 H 1.08994 * 109.46903 * 303.67742 * 14 13 11 40 40 H 1.08997 * 109.46930 * 63.68185 * 14 13 11 41 41 H 0.97002 * 120.00217 * 185.03873 * 19 18 16 42 42 H 1.09002 * 117.49633 * 0.02562 * 24 15 14 43 43 H 1.09000 * 117.50039 * 145.02244 * 24 15 14 44 44 H 1.08994 * 117.50517 * 214.98066 * 25 15 14 45 45 H 1.09002 * 117.49387 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6370 -2.2203 0.9730 6 6 0.5652 -2.7505 1.6614 7 6 0.2345 -4.0854 1.5110 8 6 0.9724 -4.8964 0.6668 9 6 2.0493 -4.3802 -0.0232 10 6 2.3880 -3.0339 0.1234 11 6 3.5380 -2.4726 -0.6171 12 8 3.7572 -1.2775 -0.5841 13 7 4.3432 -3.2861 -1.3286 14 6 5.5452 -2.7482 -1.9706 15 6 6.2259 -3.8511 -2.7838 16 6 6.5437 -5.1149 -2.0269 17 1 6.4643 -6.0732 -2.5185 18 6 6.9359 -5.0475 -0.7068 19 7 7.2409 -3.8864 -0.1698 20 14 7.0342 -6.6056 0.3190 21 1 8.3946 -7.1896 0.2030 22 1 6.7545 -6.2807 1.7408 23 1 6.0315 -7.5851 -0.1714 24 6 7.2017 -3.4202 -3.8806 25 6 5.8312 -3.9895 -4.2556 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0253 -0.0708 29 1 3.0827 1.3432 -0.0709 30 1 1.5897 1.9163 -0.8525 31 1 1.7043 1.8724 0.9233 32 1 1.5610 -0.3871 2.0628 33 1 3.0797 -0.6610 1.1757 34 1 -0.0169 -2.1221 2.3192 35 1 -0.6056 -4.4953 2.0518 36 1 0.7067 -5.9368 0.5508 37 1 2.6265 -5.0151 -0.6792 38 1 4.1270 -4.2276 -1.4155 39 1 5.2675 -1.9278 -2.6322 40 1 6.2323 -2.3829 -1.2074 41 1 7.5865 -3.8466 0.7357 42 1 7.3591 -2.3509 -4.0225 43 1 8.0735 -4.0509 -4.0549 44 1 5.8018 -4.9945 -4.6764 45 1 5.0863 -3.2951 -4.6443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487581378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:24 Heat of formation + Delta-G solvation = 29.415840 kcal Electronic energy + Delta-G solvation = -25405.683905 eV Core-core repulsion = 22003.296032 eV Total energy + Delta-G solvation = -3402.387872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.92727 -37.91270 -36.78163 -36.47817 -33.11224 -32.18979 -31.46356 -30.85347 -27.37096 -26.85115 -25.93240 -25.24131 -23.13953 -22.24494 -21.21367 -20.72070 -19.54115 -19.18874 -17.33537 -16.20218 -15.76400 -15.35761 -15.29337 -14.87175 -14.78582 -14.53880 -14.14696 -14.04514 -13.95116 -13.47520 -12.98225 -12.67627 -12.37308 -12.32117 -12.17361 -11.81306 -11.69033 -11.57586 -11.37462 -11.34897 -11.25664 -11.05143 -10.79872 -10.77113 -10.50221 -10.25143 -9.55335 -9.15572 -8.83414 -8.79231 -8.72804 -8.58899 -8.21533 -7.98774 -7.72986 -6.07492 -4.17330 1.19974 1.48732 3.20526 3.30387 3.31112 3.47050 4.11527 4.23613 4.29765 4.48932 4.93123 4.93762 4.96431 5.09385 5.27648 5.34336 5.43803 5.47253 5.50944 5.65116 5.67464 5.74017 5.80699 5.97058 6.01146 6.02997 6.10141 6.19595 6.28234 6.34369 6.48289 6.56835 6.59554 6.65532 6.72240 6.76507 6.94219 7.04639 7.13091 7.29937 7.30463 7.36911 7.57756 7.67345 7.93002 8.33487 8.61902 8.83323 9.23979 9.43497 10.89446 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.005286 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.490931 B = 5295.476027 C = 6339.872602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.518 5.518 3 C 0.035 3.965 4 C 0.097 3.903 5 C -0.030 4.030 6 C -0.128 4.128 7 C -0.107 4.107 8 C -0.129 4.129 9 C -0.089 4.089 10 C -0.099 4.099 11 C 0.543 3.457 12 O -0.533 6.533 13 N -0.687 5.687 14 C 0.164 3.836 15 C 0.037 3.963 16 C -0.500 4.500 17 H 0.061 0.939 18 C 0.078 3.922 19 N -0.866 5.866 20 Si 0.886 3.114 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.195 4.195 25 C -0.212 4.212 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.014 0.986 32 H 0.026 0.974 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.397 0.603 39 H 0.028 0.972 40 H 0.107 0.893 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 2.886 3.414 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.241 5.241 3 C -0.113 4.113 4 C -0.030 4.030 5 C -0.031 4.031 6 C -0.147 4.147 7 C -0.126 4.126 8 C -0.147 4.147 9 C -0.108 4.108 10 C -0.102 4.102 11 C 0.329 3.671 12 O -0.412 6.412 13 N -0.336 5.336 14 C 0.042 3.958 15 C 0.037 3.963 16 C -0.537 4.537 17 H 0.079 0.921 18 C -0.127 4.127 19 N -0.501 5.501 20 Si 0.713 3.287 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.234 4.234 25 C -0.249 4.249 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.232 0.768 39 H 0.046 0.954 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.904 3.625 3.200 13.780 hybrid contribution -0.230 -1.077 1.191 1.623 sum -13.134 2.548 4.391 14.081 Atomic orbital electron populations 1.22459 0.88720 1.01966 0.99575 1.61741 1.06095 1.13451 1.42840 1.22279 1.01849 0.88109 0.99047 1.21145 1.02933 0.88780 0.90140 1.19813 0.93510 0.95406 0.94403 1.20967 0.97348 0.95579 1.00807 1.21183 0.99435 0.93753 0.98211 1.21064 0.96059 0.99934 0.97660 1.21470 0.96505 0.94383 0.98459 1.20099 0.97377 0.93674 0.99066 1.18038 0.82410 0.86584 0.80114 1.90669 1.73163 1.14486 1.62884 1.45748 1.24814 1.12230 1.50786 1.20976 0.84980 0.93384 0.96495 1.19199 0.96218 0.95648 0.85255 1.20467 1.47326 0.90868 0.95085 0.92074 1.24950 0.94404 0.95853 0.97522 1.69845 1.41074 1.23603 1.15584 0.86676 0.78668 0.83545 0.79773 1.20603 1.21014 1.19606 1.22903 0.92856 0.98333 1.09282 1.22953 0.98303 1.00247 1.03406 0.96473 0.91912 0.91557 0.90491 0.92033 0.96745 0.95641 0.87278 0.86268 0.86157 0.85811 0.85230 0.76803 0.95408 0.87498 0.92649 0.91542 0.90273 0.90691 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.27 60.07 0.56 0.83 16 2 N -0.52 -8.03 4.09 -252.71 -1.03 -9.06 16 3 C 0.04 0.49 9.57 60.06 0.57 1.06 16 4 C 0.10 1.53 4.10 -4.98 -0.02 1.51 16 5 C -0.03 -0.47 4.61 -104.22 -0.48 -0.95 16 6 C -0.13 -1.66 8.72 -39.64 -0.35 -2.01 16 7 C -0.11 -1.28 10.04 -39.49 -0.40 -1.67 16 8 C -0.13 -1.66 10.03 -39.64 -0.40 -2.06 16 9 C -0.09 -1.39 9.53 -39.19 -0.37 -1.77 16 10 C -0.10 -1.75 5.87 -104.97 -0.62 -2.36 16 11 C 0.54 11.34 7.69 -12.33 -0.09 11.24 16 12 O -0.53 -12.01 12.72 5.32 0.07 -11.95 16 13 N -0.69 -14.79 5.28 -61.25 -0.32 -15.11 16 14 C 0.16 3.87 4.79 -4.04 -0.02 3.86 16 15 C 0.04 0.88 1.97 -155.66 -0.31 0.58 16 16 C -0.50 -12.60 8.28 -34.44 -0.29 -12.89 16 17 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 18 C 0.08 1.97 5.17 -17.82 -0.09 1.88 16 19 N -0.87 -22.99 10.80 55.43 0.60 -22.40 16 20 Si 0.89 19.86 29.55 -169.99 -5.02 14.84 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 24 C -0.20 -4.32 9.96 -26.70 -0.27 -4.58 16 25 C -0.21 -4.45 9.92 -26.69 -0.26 -4.71 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.07 0.86 6.65 -51.93 -0.35 0.51 16 29 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 30 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.03 0.35 7.98 -51.93 -0.41 -0.06 16 33 H 0.11 2.02 6.05 -51.93 -0.31 1.70 16 34 H 0.12 1.28 8.04 -52.48 -0.42 0.85 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.13 1.95 6.44 -52.48 -0.34 1.62 16 38 H 0.40 8.19 6.01 -40.82 -0.25 7.95 16 39 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.11 2.85 6.03 -51.93 -0.31 2.54 16 41 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 44 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -27.94 364.04 -10.06 -38.00 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -7.00 Total: 12.24 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.83 Total: -12.05 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.76 Total: -46.57 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.95 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.94 -10.06 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487581378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.415 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds