Wall clock time and date at job start Tue Mar 31 2020 08:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99515 * 2 1 4 4 C 1.46897 * 110.99767 * 123.94846 * 2 1 3 5 5 C 1.50702 * 109.47060 * 66.05144 * 4 2 1 6 6 C 1.37976 * 120.07119 * 260.02030 * 5 4 2 7 7 C 1.38342 * 120.14520 * 179.97438 * 6 5 4 8 8 C 1.38380 * 120.28902 * 359.78666 * 7 6 5 9 9 C 1.37928 * 120.14606 * 0.46766 * 8 7 6 10 10 C 1.39559 * 120.07575 * 79.99290 * 5 4 2 11 11 C 1.47846 * 120.14327 * 0.04931 * 10 5 4 12 12 O 1.21551 * 119.99804 * 353.21730 * 11 10 5 13 13 N 1.34771 * 119.99864 * 173.21839 * 11 10 5 14 14 C 1.46506 * 119.99699 * 185.07797 * 13 11 10 15 15 C 1.52998 * 109.46924 * 183.67991 * 14 13 11 16 16 C 1.50706 * 115.55280 * 305.89532 * 15 14 13 17 17 H 1.08002 * 119.99718 * 144.13357 * 16 15 14 18 18 C 1.37874 * 119.99592 * 324.13383 * 16 15 14 19 19 N 1.31513 * 120.00129 * 349.05205 * 18 16 15 20 20 Si 1.86799 * 119.99931 * 169.05661 * 18 16 15 21 21 H 1.48498 * 109.47151 * 89.99538 * 20 18 16 22 22 H 1.48500 * 109.47439 * 209.99831 * 20 18 16 23 23 H 1.48503 * 109.46949 * 329.99747 * 20 18 16 24 24 C 1.52997 * 117.50007 * 160.22141 * 15 14 13 25 25 C 1.53000 * 117.49914 * 91.56195 * 15 14 13 26 26 H 1.08995 * 109.47389 * 296.04865 * 1 2 3 27 27 H 1.09002 * 109.47160 * 56.04922 * 1 2 3 28 28 H 1.09007 * 109.46908 * 176.04757 * 1 2 3 29 29 H 1.09002 * 109.46612 * 183.95579 * 3 2 1 30 30 H 1.09005 * 109.47064 * 303.94846 * 3 2 1 31 31 H 1.09001 * 109.47794 * 63.95472 * 3 2 1 32 32 H 1.08999 * 109.47307 * 306.05084 * 4 2 1 33 33 H 1.09001 * 109.46873 * 186.04784 * 4 2 1 34 34 H 1.08003 * 119.93217 * 359.97418 * 6 5 4 35 35 H 1.07999 * 119.85332 * 180.02562 * 7 6 5 36 36 H 1.08008 * 119.92443 * 180.23250 * 8 7 6 37 37 H 1.08008 * 120.07314 * 179.79056 * 9 8 7 38 38 H 0.96996 * 120.00382 * 5.06804 * 13 11 10 39 39 H 1.08994 * 109.46903 * 303.67742 * 14 13 11 40 40 H 1.08997 * 109.46930 * 63.68185 * 14 13 11 41 41 H 0.97002 * 120.00217 * 185.03873 * 19 18 16 42 42 H 1.09002 * 117.49633 * 0.02562 * 24 15 14 43 43 H 1.09000 * 117.50039 * 145.02244 * 24 15 14 44 44 H 1.08994 * 117.50517 * 214.98066 * 25 15 14 45 45 H 1.09002 * 117.49387 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6370 -2.2203 0.9730 6 6 0.5652 -2.7505 1.6614 7 6 0.2345 -4.0854 1.5110 8 6 0.9724 -4.8964 0.6668 9 6 2.0493 -4.3802 -0.0232 10 6 2.3880 -3.0339 0.1234 11 6 3.5380 -2.4726 -0.6171 12 8 3.7572 -1.2775 -0.5841 13 7 4.3432 -3.2861 -1.3286 14 6 5.5452 -2.7482 -1.9706 15 6 6.2259 -3.8511 -2.7838 16 6 6.5437 -5.1149 -2.0269 17 1 6.4643 -6.0732 -2.5185 18 6 6.9359 -5.0475 -0.7068 19 7 7.2409 -3.8864 -0.1698 20 14 7.0342 -6.6056 0.3190 21 1 8.3946 -7.1896 0.2030 22 1 6.7545 -6.2807 1.7408 23 1 6.0315 -7.5851 -0.1714 24 6 7.2017 -3.4202 -3.8806 25 6 5.8312 -3.9895 -4.2556 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0253 -0.0708 29 1 3.0827 1.3432 -0.0709 30 1 1.5897 1.9163 -0.8525 31 1 1.7043 1.8724 0.9233 32 1 1.5610 -0.3871 2.0628 33 1 3.0797 -0.6610 1.1757 34 1 -0.0169 -2.1221 2.3192 35 1 -0.6056 -4.4953 2.0518 36 1 0.7067 -5.9368 0.5508 37 1 2.6265 -5.0151 -0.6792 38 1 4.1270 -4.2276 -1.4155 39 1 5.2675 -1.9278 -2.6322 40 1 6.2323 -2.3829 -1.2074 41 1 7.5865 -3.8466 0.7357 42 1 7.3591 -2.3509 -4.0225 43 1 8.0735 -4.0509 -4.0549 44 1 5.8018 -4.9945 -4.6764 45 1 5.0863 -3.2951 -4.6443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487581378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:24 Heat of formation + Delta-G solvation = 13.881370 kcal Electronic energy + Delta-G solvation = -25406.357530 eV Core-core repulsion = 22003.296032 eV Total energy + Delta-G solvation = -3403.061498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23945 -39.41793 -38.23488 -37.86767 -34.77983 -34.12772 -32.59048 -32.05569 -28.43116 -28.19359 -27.62805 -26.98070 -24.40445 -23.33615 -22.96076 -21.93484 -21.16274 -20.88506 -18.84472 -17.88993 -16.95991 -16.71354 -16.64306 -16.45980 -16.21890 -15.90604 -15.62919 -15.34979 -15.18134 -15.01092 -14.65812 -13.95063 -13.72416 -13.65785 -13.47340 -13.22064 -13.17159 -12.91321 -12.88854 -12.65613 -12.55955 -12.46681 -12.39960 -12.28712 -12.04071 -11.87462 -11.36640 -11.07028 -10.64777 -10.37027 -10.06961 -9.88203 -9.77053 -9.46570 -9.07592 -8.01720 -6.17441 0.03069 0.41838 1.41284 1.46091 1.53910 2.16230 2.41411 2.57934 2.92669 3.07445 3.34899 3.65330 3.82363 3.87704 4.01234 4.20914 4.27354 4.28191 4.37581 4.45232 4.54111 4.58073 4.59660 4.62960 4.75627 4.78285 4.81449 4.86123 4.95708 4.97115 5.01148 5.06573 5.12069 5.14314 5.30849 5.43815 5.52954 5.53247 5.59468 5.62151 5.92744 5.94265 6.01048 6.18997 6.31131 6.39668 6.79901 7.03662 7.45563 7.61465 8.93223 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.005286 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.490931 B = 5295.476027 C = 6339.872602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.040 3.960 4 C 0.103 3.897 5 C -0.042 4.042 6 C -0.124 4.124 7 C -0.091 4.091 8 C -0.126 4.126 9 C -0.102 4.102 10 C -0.132 4.132 11 C 0.535 3.465 12 O -0.559 6.559 13 N -0.690 5.690 14 C 0.180 3.820 15 C 0.010 3.990 16 C -0.506 4.506 17 H 0.060 0.940 18 C 0.039 3.961 19 N -0.893 5.893 20 Si 0.942 3.058 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.258 1.258 24 C -0.197 4.197 25 C -0.186 4.186 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.400 0.600 39 H 0.019 0.981 40 H 0.071 0.929 41 H 0.258 0.742 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.216 1.376 4.223 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.108 4.108 4 C -0.024 4.024 5 C -0.044 4.044 6 C -0.142 4.142 7 C -0.109 4.109 8 C -0.144 4.144 9 C -0.120 4.120 10 C -0.135 4.135 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.338 5.338 14 C 0.057 3.943 15 C 0.009 3.991 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.163 4.163 19 N -0.529 5.529 20 Si 0.768 3.232 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.182 1.182 24 C -0.236 4.236 25 C -0.223 4.223 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.180 0.820 36 H 0.172 0.828 37 H 0.143 0.857 38 H 0.235 0.765 39 H 0.037 0.963 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.854 2.099 3.993 16.483 hybrid contribution 0.632 -0.583 0.937 1.272 sum -15.221 1.516 4.930 16.072 Atomic orbital electron populations 1.22443 0.86758 1.02160 1.00845 1.61683 1.08005 1.14003 1.43211 1.22202 1.00097 0.88048 1.00470 1.20966 1.00718 0.89534 0.91202 1.19957 0.94489 0.95112 0.94803 1.21277 0.96209 0.96605 1.00147 1.21678 0.99516 0.92932 0.96754 1.21436 0.94717 1.01564 0.96693 1.21555 0.97770 0.93448 0.99274 1.19940 0.97459 0.95174 1.00953 1.18692 0.83031 0.86313 0.79639 1.90654 1.74100 1.15628 1.63624 1.45675 1.24422 1.12431 1.51307 1.20567 0.85181 0.93309 0.95289 1.19269 0.97892 0.95456 0.86452 1.20644 1.46971 0.91260 0.95476 0.92209 1.25546 0.94221 0.98078 0.98427 1.70014 1.42161 1.25315 1.15429 0.85799 0.78702 0.80796 0.77947 1.20711 1.21666 1.18157 1.22913 0.93314 0.98813 1.08564 1.22933 0.97557 1.00951 1.00894 0.94643 0.91139 0.91788 0.93379 0.90872 0.94923 0.93647 0.91204 0.83441 0.81996 0.82786 0.85708 0.76450 0.96327 0.91091 0.93244 0.90925 0.90530 0.89623 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.27 127.69 1.18 1.79 16 2 N -0.55 -16.85 4.09 -953.45 -3.90 -20.75 16 3 C 0.04 1.12 9.57 127.69 1.22 2.34 16 4 C 0.10 3.27 4.10 85.56 0.35 3.63 16 5 C -0.04 -1.30 4.61 -19.61 -0.09 -1.39 16 6 C -0.12 -2.79 8.72 22.23 0.19 -2.60 16 7 C -0.09 -1.74 10.04 22.33 0.22 -1.52 16 8 C -0.13 -2.82 10.03 22.23 0.22 -2.60 16 9 C -0.10 -3.07 9.53 22.52 0.21 -2.86 16 10 C -0.13 -4.72 5.87 -20.09 -0.12 -4.84 16 11 C 0.54 23.46 7.69 86.79 0.67 24.13 16 12 O -0.56 -26.90 12.72 -3.88 -0.05 -26.95 16 13 N -0.69 -30.94 5.28 -465.98 -2.46 -33.40 16 14 C 0.18 8.90 4.79 86.38 0.41 9.31 16 15 C 0.01 0.48 1.97 -52.93 -0.10 0.37 16 16 C -0.51 -25.69 8.28 25.60 0.21 -25.48 16 17 H 0.06 2.99 7.84 -2.91 -0.02 2.97 16 18 C 0.04 2.02 5.17 84.65 0.44 2.46 16 19 N -0.89 -49.11 10.80 21.45 0.23 -48.88 16 20 Si 0.94 40.95 29.55 68.60 2.03 42.98 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 C -0.20 -8.77 9.96 30.62 0.30 -8.46 16 25 C -0.19 -7.68 9.92 30.62 0.30 -7.38 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 28 H 0.06 1.51 6.65 -2.38 -0.02 1.49 16 29 H 0.05 1.60 8.12 -2.39 -0.02 1.58 16 30 H 0.07 1.82 8.12 -2.38 -0.02 1.80 16 31 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 1.21 7.98 -2.39 -0.02 1.19 16 33 H 0.07 2.76 6.05 -2.39 -0.01 2.74 16 34 H 0.15 2.47 8.04 -2.91 -0.02 2.45 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.13 3.75 6.44 -2.91 -0.02 3.74 16 38 H 0.40 17.05 6.01 -92.71 -0.56 16.49 16 39 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 40 H 0.07 4.03 6.03 -2.39 -0.01 4.02 16 41 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 42 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 45 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -62.87 364.04 1.92 -60.96 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: 0.42 Total: 39.13 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 5.64 Total: -13.09 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -6.13 Total: -103.03 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -62.87 1.92 -60.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487581378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.839 kcal (2) G-P(sol) polarization free energy of solvation -62.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds