Wall clock time and date at job start Tue Mar 31 2020 07:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46910 * 109.46806 * 2 1 4 4 C 1.46897 * 110.99712 * 287.33072 * 3 2 1 5 5 C 1.50703 * 109.46617 * 76.62054 * 4 3 2 6 6 H 1.07996 * 120.00413 * 355.15308 * 5 4 3 7 7 C 1.37886 * 119.99760 * 175.16265 * 5 4 3 8 8 N 1.31512 * 119.99872 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46954 * 89.99805 * 9 7 5 11 11 H 1.48498 * 109.47000 * 209.99737 * 9 7 5 12 12 H 1.48494 * 109.47288 * 329.99506 * 9 7 5 13 13 C 1.46906 * 110.99576 * 163.38276 * 3 2 1 14 14 N 1.46505 * 109.46680 * 254.67833 * 13 3 2 15 15 C 1.34601 * 134.67046 * 269.11345 * 14 13 3 16 16 O 1.21284 * 131.84091 * 0.02562 * 15 14 13 17 17 C 1.50558 * 96.30861 * 180.02562 * 15 14 13 18 18 H 1.08998 * 114.22458 * 113.61838 * 17 15 14 19 19 C 1.53000 * 114.57421 * 246.82825 * 17 15 14 20 20 C 1.46357 * 134.66244 * 89.48373 * 14 13 3 21 21 H 1.08993 * 113.05509 * 64.51795 * 20 14 13 22 22 C 1.50702 * 113.04972 * 295.42500 * 20 14 13 23 23 C 1.38235 * 119.99944 * 326.96625 * 22 20 14 24 24 C 1.38238 * 119.99765 * 179.78281 * 23 22 20 25 25 C 1.38236 * 120.00336 * 0.46579 * 24 23 22 26 26 C 1.38244 * 119.99466 * 359.76635 * 25 24 23 27 27 C 1.38231 * 120.00090 * 147.23372 * 22 20 14 28 28 H 1.08995 * 109.47244 * 307.70620 * 1 2 3 29 29 H 1.08996 * 109.46932 * 187.70744 * 1 2 3 30 30 H 1.09002 * 109.47374 * 67.70812 * 1 2 3 31 31 H 1.09001 * 109.47760 * 119.99533 * 2 1 3 32 32 H 1.08997 * 109.47563 * 240.00268 * 2 1 3 33 33 H 1.09004 * 109.47158 * 196.61570 * 4 3 2 34 34 H 1.09001 * 109.47865 * 316.61700 * 4 3 2 35 35 H 0.96999 * 120.00232 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47486 * 14.68201 * 13 3 2 37 37 H 1.09005 * 109.46574 * 134.68430 * 13 3 2 38 38 H 1.09000 * 109.47455 * 152.78646 * 19 17 15 39 39 H 1.08996 * 109.46836 * 272.79053 * 19 17 15 40 40 H 1.09003 * 109.46894 * 32.79067 * 19 17 15 41 41 H 1.07996 * 120.00337 * 359.97438 * 23 22 20 42 42 H 1.07998 * 120.00272 * 180.24657 * 24 23 22 43 43 H 1.07993 * 120.00295 * 179.78532 * 25 24 23 44 44 H 1.07997 * 119.99786 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.00097 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8098 2.0175 -1.3092 5 6 0.3586 2.3958 -1.4574 6 1 -0.3527 2.1178 -0.6939 7 6 -0.0611 3.0968 -2.5682 8 7 0.8052 3.4356 -3.4979 9 14 -1.8600 3.5651 -2.7524 10 1 -2.0912 4.8948 -2.1330 11 1 -2.2113 3.6227 -4.1940 12 1 -2.7074 2.5501 -2.0766 13 6 3.4341 1.4434 0.3922 14 7 3.5405 1.9527 1.7617 15 6 3.6805 3.1746 2.3087 16 8 3.7650 4.2782 1.8127 17 6 3.6972 2.7134 3.7418 18 1 4.6492 2.8670 4.2500 19 6 2.4887 3.1588 4.5677 20 6 3.5442 1.3388 3.0903 21 1 4.4032 0.6892 3.2579 22 6 2.2403 0.6653 3.4328 23 6 1.0499 1.1805 2.9550 24 6 -0.1458 0.5600 3.2655 25 6 -0.1519 -0.5700 4.0616 26 6 1.0383 -1.0824 4.5434 27 6 2.2343 -0.4645 4.2292 28 1 -0.3633 0.6285 0.8130 29 1 -0.3633 -1.0184 0.1378 30 1 -0.3634 0.3898 -0.9509 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.4280 2.9123 -1.3837 34 1 2.0857 1.3186 -2.0988 35 1 0.5101 3.9291 -4.2791 36 1 3.8667 0.4442 0.3415 37 1 3.9718 2.1070 -0.2850 38 1 2.3143 2.4434 5.3714 39 1 2.6824 4.1434 4.9932 40 1 1.6083 3.2067 3.9267 41 1 1.0541 2.0659 2.3367 42 1 -1.0756 0.9601 2.8889 43 1 -1.0862 -1.0527 4.3070 44 1 1.0337 -1.9655 5.1650 45 1 3.1641 -0.8648 4.6058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743355708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:53 Heat of formation + Delta-G solvation = 43.266791 kcal Electronic energy + Delta-G solvation = -26143.441441 eV Core-core repulsion = 22741.654191 eV Total energy + Delta-G solvation = -3401.787250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30592 -38.56784 -36.93978 -36.09613 -32.70111 -31.99286 -30.96402 -30.46993 -29.74960 -27.75665 -25.99691 -24.50192 -22.85379 -22.47061 -22.06492 -20.96476 -20.16845 -18.02447 -16.86855 -16.66852 -16.60790 -16.00534 -15.62635 -14.95827 -14.57384 -14.48181 -14.36394 -13.82454 -13.80356 -13.43818 -13.16271 -12.83943 -12.82300 -12.33236 -12.21238 -12.15085 -11.76260 -11.54331 -11.35790 -11.25031 -11.16592 -11.02110 -10.87384 -10.67159 -10.59750 -10.52788 -10.34258 -9.58324 -9.47197 -9.08425 -8.71463 -8.63834 -8.43516 -8.35383 -7.40069 -5.99904 -3.98926 1.43179 1.61827 2.86158 3.30982 3.33209 3.39609 3.41298 3.91997 4.03322 4.43889 4.64274 4.72058 4.96803 4.99509 5.14833 5.15700 5.24872 5.32858 5.35720 5.39393 5.59283 5.67033 5.76137 5.79441 5.84189 5.87924 5.91958 6.10629 6.11762 6.23565 6.27590 6.30291 6.50623 6.58591 6.68693 6.77888 6.85132 6.94485 7.10091 7.16071 7.18963 7.30338 7.34422 7.83170 8.08963 8.17788 8.48247 8.61799 9.05563 9.62922 11.10916 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.005721 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.685640 B = 4893.501897 C = 5779.368029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 N -0.545 5.545 4 C 0.196 3.804 5 C -0.503 4.503 6 H 0.074 0.926 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.297 3.703 14 N -0.606 5.606 15 C 0.520 3.480 16 O -0.513 6.513 17 C -0.138 4.138 18 H 0.120 0.880 19 C -0.127 4.127 20 C 0.165 3.835 21 H 0.094 0.906 22 C -0.097 4.097 23 C -0.062 4.062 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.133 4.133 27 C -0.110 4.110 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.032 0.968 34 H -0.008 1.008 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 -9.431 17.383 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.054 4.054 3 N -0.272 5.272 4 C 0.072 3.928 5 C -0.541 4.541 6 H 0.092 0.908 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.087 3.913 14 N -0.343 5.343 15 C 0.305 3.695 16 O -0.386 6.386 17 C -0.160 4.160 18 H 0.138 0.862 19 C -0.184 4.184 20 C 0.061 3.939 21 H 0.112 0.888 22 C -0.098 4.098 23 C -0.080 4.080 24 C -0.137 4.137 25 C -0.135 4.135 26 C -0.151 4.151 27 C -0.129 4.129 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.010 0.990 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.684 -8.554 16.978 19.365 hybrid contribution -0.551 -0.341 -0.956 1.155 sum 3.133 -8.895 16.022 18.591 Atomic orbital electron populations 1.22130 0.94999 0.98826 1.04845 1.21871 0.96962 0.88624 0.97901 1.61657 1.14992 1.16535 1.33986 1.19853 0.98160 0.93335 0.81485 1.21359 0.93390 1.34384 1.04981 0.90796 1.25001 0.97593 0.96022 0.96113 1.69952 1.33954 1.39765 1.10159 0.86566 0.85229 0.78998 0.77034 1.20709 1.21427 1.19852 1.21732 0.91394 0.97757 0.80440 1.50507 1.70814 1.07756 1.05182 1.21941 0.75209 0.84068 0.88293 1.90710 1.50016 1.23657 1.74196 1.23004 1.02339 0.94677 0.95943 0.86218 1.21540 0.96173 1.01368 0.99369 1.21022 0.95468 0.95078 0.82330 0.88776 1.19741 0.94524 0.96268 0.99308 1.21233 0.91167 0.99689 0.95923 1.21162 0.98385 0.96067 0.98125 1.21118 0.97796 0.96582 0.98018 1.20961 0.92620 1.00167 1.01350 1.20860 0.97919 0.95369 0.98708 0.92303 0.95216 0.89368 0.93442 0.96047 0.95028 0.98984 0.93009 0.92248 0.89810 0.91244 0.91710 0.91334 0.84559 0.86231 0.86724 0.86686 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.50 37.16 0.32 -2.49 16 2 C 0.07 1.36 4.57 -3.82 -0.02 1.35 16 3 N -0.55 -11.09 3.58 -239.96 -0.86 -11.95 16 4 C 0.20 4.98 4.65 -4.98 -0.02 4.96 16 5 C -0.50 -13.66 7.31 -34.44 -0.25 -13.91 16 6 H 0.07 1.95 5.44 -52.49 -0.29 1.67 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.30 5.26 7.01 -63.30 -0.44 4.82 16 14 N -0.61 -9.69 2.69 -197.26 -0.53 -10.22 16 15 C 0.52 9.02 8.56 -23.41 -0.20 8.82 16 16 O -0.51 -11.41 18.03 5.55 0.10 -11.31 16 17 C -0.14 -1.64 4.77 -91.90 -0.44 -2.08 16 18 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 19 C -0.13 -1.43 8.44 37.16 0.31 -1.12 16 20 C 0.17 2.00 4.47 -81.49 -0.36 1.63 16 21 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 22 C -0.10 -1.20 3.90 -104.62 -0.41 -1.61 16 23 C -0.06 -0.89 4.91 -39.58 -0.19 -1.09 16 24 C -0.12 -1.58 8.58 -39.58 -0.34 -1.92 16 25 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 26 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 27 C -0.11 -1.16 9.71 -39.59 -0.38 -1.54 16 28 H 0.06 1.09 5.29 -51.93 -0.27 0.81 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.92 5.56 -51.93 -0.29 1.63 16 31 H 0.05 0.79 7.31 -51.93 -0.38 0.41 16 32 H 0.02 0.40 7.79 -51.93 -0.40 0.00 16 33 H 0.03 0.90 7.53 -51.93 -0.39 0.51 16 34 H -0.01 -0.20 7.76 -51.93 -0.40 -0.61 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.06 0.91 7.57 -51.93 -0.39 0.52 16 37 H 0.08 1.62 7.24 -51.93 -0.38 1.24 16 38 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.92 5.77 -51.93 -0.30 0.62 16 41 H 0.14 2.44 6.51 -52.49 -0.34 2.10 16 42 H 0.12 1.57 7.84 -52.49 -0.41 1.16 16 43 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -31.97 353.81 -10.32 -42.28 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.75 Total: 1.49 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.33 Total: -6.26 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.65 Total: -48.25 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.10 Total: -11.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.97 -10.32 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743355708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.552 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds