Wall clock time and date at job start Tue Mar 31 2020 07:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46910 * 109.46806 * 2 1 4 4 C 1.46897 * 110.99712 * 287.33072 * 3 2 1 5 5 C 1.50703 * 109.46617 * 76.62054 * 4 3 2 6 6 H 1.07996 * 120.00413 * 355.15308 * 5 4 3 7 7 C 1.37886 * 119.99760 * 175.16265 * 5 4 3 8 8 N 1.31512 * 119.99872 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46954 * 89.99805 * 9 7 5 11 11 H 1.48498 * 109.47000 * 209.99737 * 9 7 5 12 12 H 1.48494 * 109.47288 * 329.99506 * 9 7 5 13 13 C 1.46906 * 110.99576 * 163.38276 * 3 2 1 14 14 N 1.46505 * 109.46680 * 254.67833 * 13 3 2 15 15 C 1.34601 * 134.67046 * 269.11345 * 14 13 3 16 16 O 1.21284 * 131.84091 * 0.02562 * 15 14 13 17 17 C 1.50558 * 96.30861 * 180.02562 * 15 14 13 18 18 H 1.08998 * 114.22458 * 113.61838 * 17 15 14 19 19 C 1.53000 * 114.57421 * 246.82825 * 17 15 14 20 20 C 1.46357 * 134.66244 * 89.48373 * 14 13 3 21 21 H 1.08993 * 113.05509 * 64.51795 * 20 14 13 22 22 C 1.50702 * 113.04972 * 295.42500 * 20 14 13 23 23 C 1.38235 * 119.99944 * 326.96625 * 22 20 14 24 24 C 1.38238 * 119.99765 * 179.78281 * 23 22 20 25 25 C 1.38236 * 120.00336 * 0.46579 * 24 23 22 26 26 C 1.38244 * 119.99466 * 359.76635 * 25 24 23 27 27 C 1.38231 * 120.00090 * 147.23372 * 22 20 14 28 28 H 1.08995 * 109.47244 * 307.70620 * 1 2 3 29 29 H 1.08996 * 109.46932 * 187.70744 * 1 2 3 30 30 H 1.09002 * 109.47374 * 67.70812 * 1 2 3 31 31 H 1.09001 * 109.47760 * 119.99533 * 2 1 3 32 32 H 1.08997 * 109.47563 * 240.00268 * 2 1 3 33 33 H 1.09004 * 109.47158 * 196.61570 * 4 3 2 34 34 H 1.09001 * 109.47865 * 316.61700 * 4 3 2 35 35 H 0.96999 * 120.00232 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47486 * 14.68201 * 13 3 2 37 37 H 1.09005 * 109.46574 * 134.68430 * 13 3 2 38 38 H 1.09000 * 109.47455 * 152.78646 * 19 17 15 39 39 H 1.08996 * 109.46836 * 272.79053 * 19 17 15 40 40 H 1.09003 * 109.46894 * 32.79067 * 19 17 15 41 41 H 1.07996 * 120.00337 * 359.97438 * 23 22 20 42 42 H 1.07998 * 120.00272 * 180.24657 * 24 23 22 43 43 H 1.07993 * 120.00295 * 179.78532 * 25 24 23 44 44 H 1.07997 * 119.99786 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.00097 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8098 2.0175 -1.3092 5 6 0.3586 2.3958 -1.4574 6 1 -0.3527 2.1178 -0.6939 7 6 -0.0611 3.0968 -2.5682 8 7 0.8052 3.4356 -3.4979 9 14 -1.8600 3.5651 -2.7524 10 1 -2.0912 4.8948 -2.1330 11 1 -2.2113 3.6227 -4.1940 12 1 -2.7074 2.5501 -2.0766 13 6 3.4341 1.4434 0.3922 14 7 3.5405 1.9527 1.7617 15 6 3.6805 3.1746 2.3087 16 8 3.7650 4.2782 1.8127 17 6 3.6972 2.7134 3.7418 18 1 4.6492 2.8670 4.2500 19 6 2.4887 3.1588 4.5677 20 6 3.5442 1.3388 3.0903 21 1 4.4032 0.6892 3.2579 22 6 2.2403 0.6653 3.4328 23 6 1.0499 1.1805 2.9550 24 6 -0.1458 0.5600 3.2655 25 6 -0.1519 -0.5700 4.0616 26 6 1.0383 -1.0824 4.5434 27 6 2.2343 -0.4645 4.2292 28 1 -0.3633 0.6285 0.8130 29 1 -0.3633 -1.0184 0.1378 30 1 -0.3634 0.3898 -0.9509 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.4280 2.9123 -1.3837 34 1 2.0857 1.3186 -2.0988 35 1 0.5101 3.9291 -4.2791 36 1 3.8667 0.4442 0.3415 37 1 3.9718 2.1070 -0.2850 38 1 2.3143 2.4434 5.3714 39 1 2.6824 4.1434 4.9932 40 1 1.6083 3.2067 3.9267 41 1 1.0541 2.0659 2.3367 42 1 -1.0756 0.9601 2.8889 43 1 -1.0862 -1.0527 4.3070 44 1 1.0337 -1.9655 5.1650 45 1 3.1641 -0.8648 4.6058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743355708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:52 Heat of formation + Delta-G solvation = 24.171945 kcal Electronic energy + Delta-G solvation = -26144.269456 eV Core-core repulsion = 22741.654191 eV Total energy + Delta-G solvation = -3402.615265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.45595 -39.57072 -38.61320 -37.48664 -34.73380 -33.30900 -31.90935 -31.41905 -31.17328 -29.60396 -27.42294 -25.70973 -24.35625 -23.96719 -23.07838 -21.99435 -21.82579 -19.27129 -18.60232 -17.87983 -17.75378 -17.56643 -16.81865 -16.58475 -16.16426 -15.57331 -15.48662 -15.43814 -15.29180 -14.67464 -14.28389 -14.09016 -14.05245 -13.90703 -13.44950 -13.23739 -13.17079 -13.14435 -12.95438 -12.75718 -12.59637 -12.52744 -12.34190 -12.20174 -11.98899 -11.76722 -11.58631 -11.39863 -11.13133 -10.83565 -10.57168 -9.95966 -9.55911 -9.43342 -9.08573 -8.18896 -6.25049 0.53481 0.72899 1.35870 1.38238 1.47518 1.51556 2.08991 2.38552 2.85708 3.04484 3.12688 3.38610 3.71761 3.76799 3.93981 4.09621 4.25580 4.30486 4.34975 4.35041 4.43450 4.48299 4.56299 4.67519 4.78023 4.81107 4.91321 4.93573 4.98538 5.01866 5.05055 5.16373 5.24911 5.32248 5.35188 5.37795 5.57299 5.65180 5.72162 5.73905 5.81317 5.86911 5.96406 6.08337 6.29615 6.39710 6.55808 6.87487 7.25354 7.41440 8.91999 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.005721 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.685640 B = 4893.501897 C = 5779.368029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 N -0.547 5.547 4 C 0.216 3.784 5 C -0.506 4.506 6 H 0.079 0.921 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.282 1.282 11 H -0.283 1.283 12 H -0.258 1.258 13 C 0.296 3.704 14 N -0.610 5.610 15 C 0.497 3.503 16 O -0.581 6.581 17 C -0.112 4.112 18 H 0.160 0.840 19 C -0.124 4.124 20 C 0.170 3.830 21 H 0.138 0.862 22 C -0.104 4.104 23 C -0.077 4.077 24 C -0.137 4.137 25 C -0.116 4.116 26 C -0.128 4.128 27 C -0.097 4.097 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.016 0.984 33 H -0.013 1.013 34 H -0.029 1.029 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.146 0.854 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -12.598 20.962 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 N -0.274 5.274 4 C 0.089 3.911 5 C -0.544 4.544 6 H 0.097 0.903 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.182 1.182 13 C 0.086 3.914 14 N -0.345 5.345 15 C 0.284 3.716 16 O -0.459 6.459 17 C -0.133 4.133 18 H 0.178 0.822 19 C -0.182 4.182 20 C 0.068 3.932 21 H 0.155 0.845 22 C -0.105 4.105 23 C -0.095 4.095 24 C -0.155 4.155 25 C -0.134 4.134 26 C -0.146 4.146 27 C -0.116 4.116 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.034 0.966 33 H 0.005 0.995 34 H -0.012 1.012 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.150 0.850 44 H 0.164 0.836 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.704 -11.779 20.608 24.024 hybrid contribution -0.544 0.588 -1.989 2.145 sum 3.160 -11.191 18.619 21.952 Atomic orbital electron populations 1.21988 0.95169 1.00224 1.02623 1.21870 0.96764 0.87225 0.98771 1.61576 1.17116 1.17921 1.30747 1.19413 0.96599 0.91439 0.83607 1.21712 0.94274 1.33627 1.04807 0.90293 1.25905 1.02114 0.96188 0.95928 1.70096 1.36136 1.40949 1.10864 0.85514 0.80061 0.78708 0.77186 1.20802 1.20894 1.18153 1.21656 0.89652 0.98745 0.81393 1.50629 1.69665 1.08385 1.05816 1.23256 0.73881 0.83369 0.91060 1.90658 1.52924 1.26202 1.76087 1.23108 1.04382 0.93431 0.92402 0.82242 1.21548 0.94663 1.02648 0.99304 1.21366 0.97056 0.95581 0.79190 0.84492 1.19739 0.93423 0.97213 1.00150 1.20875 0.92848 0.98893 0.96891 1.21125 0.97533 0.97339 0.99524 1.21344 0.99425 0.95576 0.97056 1.21351 0.91902 1.00657 1.00646 1.21194 0.99563 0.93768 0.97036 0.92566 0.92398 0.92934 0.90639 0.96622 0.99466 1.01165 0.93054 0.88853 0.92876 0.88541 0.91047 0.94333 0.89174 0.87610 0.84975 0.83617 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.50 71.98 0.61 -4.65 16 2 C 0.08 2.93 4.57 86.30 0.39 3.33 16 3 N -0.55 -23.14 3.58 -913.11 -3.26 -26.40 16 4 C 0.22 11.70 4.65 85.56 0.40 12.10 16 5 C -0.51 -28.85 7.31 25.60 0.19 -28.66 16 6 H 0.08 4.34 5.44 -2.91 -0.02 4.32 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -58.79 13.29 21.45 0.28 -58.50 16 9 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.30 10.76 7.01 170.80 1.20 11.96 16 14 N -0.61 -19.38 2.69 -896.51 -2.41 -21.79 16 15 C 0.50 17.64 8.56 79.69 0.68 18.32 16 16 O -0.58 -27.64 18.03 -3.04 -0.05 -27.70 16 17 C -0.11 -2.39 4.77 -11.62 -0.06 -2.45 16 18 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 19 C -0.12 -2.58 8.44 71.98 0.61 -1.97 16 20 C 0.17 3.54 4.47 36.28 0.16 3.70 16 21 H 0.14 1.78 8.10 -2.39 -0.02 1.76 16 22 C -0.10 -2.21 3.90 -19.87 -0.08 -2.29 16 23 C -0.08 -2.14 4.91 22.27 0.11 -2.03 16 24 C -0.14 -3.47 8.58 22.27 0.19 -3.28 16 25 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 26 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 27 C -0.10 -1.49 9.71 22.27 0.22 -1.27 16 28 H 0.06 2.10 5.29 -2.39 -0.01 2.08 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 2.32 5.56 -2.39 -0.01 2.30 16 31 H 0.08 2.33 7.31 -2.39 -0.02 2.31 16 32 H 0.02 0.58 7.79 -2.39 -0.02 0.57 16 33 H -0.01 -0.80 7.53 -2.38 -0.02 -0.82 16 34 H -0.03 -1.68 7.76 -2.39 -0.02 -1.70 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.09 2.74 7.57 -2.39 -0.02 2.72 16 37 H 0.05 2.23 7.24 -2.38 -0.02 2.22 16 38 H 0.10 1.50 7.82 -2.39 -0.02 1.48 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.04 1.05 5.77 -2.39 -0.01 1.04 16 41 H 0.09 3.38 6.51 -2.91 -0.02 3.37 16 42 H 0.11 2.85 7.84 -2.91 -0.02 2.82 16 43 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -77.23 353.81 3.09 -74.14 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.98 Total: 13.00 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.53 Total: -0.72 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -5.39 Total: -106.69 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.23 3.09 -74.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743355708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.310 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds