Wall clock time and date at job start Tue Mar 31 2020 08:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99995 * 2 1 4 4 H 1.07994 * 119.99969 * 161.16730 * 3 2 1 5 5 C 1.38813 * 120.00045 * 340.89855 * 3 2 1 6 6 N 1.31620 * 119.99639 * 346.72914 * 5 3 2 7 7 Si 1.86797 * 120.00161 * 166.73450 * 5 3 2 8 8 H 1.48496 * 109.47108 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47036 * 119.99578 * 7 5 3 10 10 H 1.48492 * 109.47148 * 239.99578 * 7 5 3 11 11 C 1.46491 * 120.00004 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.64414 * 183.13980 * 11 2 1 13 13 C 1.55157 * 110.71951 * 306.47832 * 11 2 1 14 14 C 1.54914 * 101.58199 * 153.86443 * 13 11 2 15 15 N 1.47427 * 104.83164 * 322.99100 * 14 13 11 16 16 C 1.34776 * 125.64728 * 204.09041 * 15 14 13 17 17 O 1.21276 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99910 * 0.04329 * 16 15 14 19 19 C 1.53008 * 109.46911 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47032 * 180.02562 * 19 18 16 21 21 C 1.38234 * 119.99638 * 269.72608 * 20 19 18 22 22 C 1.38237 * 120.00192 * 179.76552 * 21 20 19 23 23 C 1.38231 * 119.99636 * 0.48604 * 22 21 20 24 24 C 1.38240 * 120.00204 * 359.78809 * 23 22 21 25 25 C 1.38233 * 120.00418 * 89.99195 * 20 19 18 26 26 C 1.47023 * 108.70285 * 24.12901 * 15 14 13 27 27 H 1.08999 * 109.46704 * 84.81349 * 1 2 3 28 28 H 1.08995 * 109.47147 * 204.81433 * 1 2 3 29 29 H 1.08999 * 109.47110 * 324.81531 * 1 2 3 30 30 H 0.97005 * 119.99401 * 180.02562 * 6 5 3 31 31 H 1.08996 * 111.00521 * 271.93953 * 13 11 2 32 32 H 1.08997 * 111.00717 * 35.79034 * 13 11 2 33 33 H 1.08998 * 110.37053 * 204.15026 * 14 13 11 34 34 H 1.08998 * 110.45826 * 81.87536 * 14 13 11 35 35 H 1.09001 * 109.47490 * 299.99548 * 18 16 15 36 36 H 1.09000 * 109.46992 * 60.00285 * 18 16 15 37 37 H 1.08998 * 109.46413 * 299.99538 * 19 18 16 38 38 H 1.08992 * 109.46981 * 59.99663 * 19 18 16 39 39 H 1.08001 * 120.00073 * 359.97438 * 21 20 19 40 40 H 1.08000 * 120.00310 * 180.24375 * 22 21 20 41 41 H 1.08004 * 120.00151 * 179.76905 * 23 22 21 42 42 H 1.07998 * 120.00000 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99912 * 0.02562 * 25 20 19 44 44 H 1.09000 * 109.87916 * 239.52208 * 26 15 14 45 45 H 1.08996 * 110.01288 * 118.42895 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2110 0.3019 5 6 1.5130 2.3550 -0.3934 6 7 0.3510 2.2964 -1.0087 7 14 2.3054 4.0113 -0.0497 8 1 3.5996 3.8054 0.6488 9 1 2.5420 4.7224 -1.3318 10 1 1.4044 4.8227 0.8074 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 0.0564 13 6 1.7248 -2.1749 1.1679 14 6 2.0499 -3.5860 0.6174 15 7 1.7501 -3.5071 -0.8239 16 6 1.4406 -4.5496 -1.6200 17 8 1.2120 -4.3669 -2.7970 18 6 1.3783 -5.9423 -1.0477 19 6 1.0098 -6.9325 -2.1544 20 6 0.9469 -8.3251 -1.5819 21 6 2.0775 -9.1203 -1.5729 22 6 2.0211 -10.3960 -1.0433 23 6 0.8316 -10.8801 -0.5321 24 6 -0.3006 -10.0869 -0.5463 25 6 -0.2428 -8.8093 -1.0709 26 6 1.8455 -2.1029 -1.2491 27 1 -0.3633 0.0929 -1.0235 28 1 -0.3633 -0.9327 0.4313 29 1 -0.3633 0.8399 0.5921 30 1 -0.0938 3.1133 -1.2839 31 1 2.2915 -1.9697 2.0760 32 1 0.6550 -2.0607 1.3427 33 1 1.4184 -4.3346 1.0958 34 1 3.1023 -3.8227 0.7736 35 1 2.3502 -6.2081 -0.6318 36 1 0.6243 -5.9785 -0.2614 37 1 0.0380 -6.6669 -2.5706 38 1 1.7640 -6.8960 -2.9404 39 1 3.0058 -8.7437 -1.9764 40 1 2.9055 -11.0159 -1.0327 41 1 0.7865 -11.8781 -0.1218 42 1 -1.2300 -10.4653 -0.1472 43 1 -1.1273 -8.1897 -1.0823 44 1 0.8901 -1.7736 -1.6577 45 1 2.6275 -1.9930 -2.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972786303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:07 Heat of formation + Delta-G solvation = 11.404740 kcal Electronic energy + Delta-G solvation = -23949.870450 eV Core-core repulsion = 20546.701557 eV Total energy + Delta-G solvation = -3403.168892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.95300 -39.30386 -37.47992 -34.80132 -34.12133 -31.70020 -31.11294 -30.08124 -29.57262 -27.85080 -26.07599 -24.98964 -23.06600 -22.79300 -22.35657 -21.09290 -19.25478 -18.87469 -17.24382 -17.06396 -16.58584 -16.09627 -15.57868 -15.29592 -15.01276 -14.87299 -14.24509 -13.65951 -13.50242 -13.41054 -13.28014 -13.20002 -12.90706 -12.56387 -12.35427 -12.15973 -11.96157 -11.83209 -11.52647 -11.44307 -11.18324 -10.98391 -10.92636 -10.82069 -10.57031 -10.43711 -10.26727 -9.89528 -9.81789 -9.61044 -9.15222 -8.89851 -8.58853 -8.28345 -6.87338 -5.76804 -3.21517 1.11806 1.17013 2.87443 3.24289 3.36098 3.43093 3.45119 3.58308 4.43797 4.47930 4.62760 4.76034 4.84109 4.93848 4.97805 5.01665 5.04069 5.25119 5.28732 5.33132 5.34018 5.45655 5.52371 5.60857 5.68723 5.77217 5.81503 5.87757 5.88914 5.99057 6.05766 6.24046 6.28064 6.32917 6.36430 6.45281 6.53768 6.67719 6.78252 6.82403 6.85985 7.37134 7.69708 7.78685 7.84739 8.31761 8.43005 9.17649 9.80452 10.27631 11.27869 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.039461 B = 0.002421 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.392860 B =11562.343579 C =11631.490593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.588 5.588 3 C -0.259 4.259 4 H 0.073 0.927 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.614 5.614 16 C 0.521 3.479 17 O -0.547 6.547 18 C -0.128 4.128 19 C -0.067 4.067 20 C -0.078 4.078 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.116 4.116 26 C 0.086 3.914 27 H 0.029 0.971 28 H 0.001 0.999 29 H 0.048 0.952 30 H 0.253 0.747 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 -23.639 4.185 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.308 5.308 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.022 4.022 15 N -0.348 5.348 16 C 0.309 3.691 17 O -0.425 6.425 18 C -0.168 4.168 19 C -0.104 4.104 20 C -0.078 4.078 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.039 4.039 27 H 0.047 0.953 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.434 -23.398 3.448 23.694 hybrid contribution 0.327 0.901 0.149 0.970 sum 1.761 -22.496 3.597 22.850 Atomic orbital electron populations 1.20828 0.82246 0.95639 0.99591 1.43976 1.02034 0.99932 1.84867 1.19300 0.96303 0.84555 1.38626 0.90961 1.25003 0.97574 0.98506 0.98655 1.70117 1.16838 1.26637 1.41489 0.86136 0.78542 0.84025 0.77532 1.20297 1.21722 1.21597 1.21338 0.96328 0.85935 0.90178 0.90397 1.23347 1.02845 0.93248 0.99932 1.22319 1.00055 0.99074 0.80757 1.48603 1.68171 1.08019 1.09974 1.20295 0.76865 0.85892 0.86025 1.90698 1.50103 1.85529 1.16215 1.21605 1.03944 0.91636 0.99607 1.20361 1.04064 0.89095 0.96919 1.19975 0.93572 0.96033 0.98252 1.21110 0.98151 0.94247 0.99980 1.21148 0.97930 0.95926 0.98748 1.21142 0.93180 0.99829 1.00450 1.21156 0.98450 0.94404 0.99699 1.21123 0.97670 0.95941 0.98715 1.22921 1.02248 0.78822 0.99917 0.95262 0.98074 0.93309 0.93683 0.90391 0.90356 0.91359 0.91646 0.89090 0.89043 0.90086 0.90126 0.86012 0.86183 0.86312 0.86156 0.85960 0.91003 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.79 59.85 0.47 4.38 16 2 N -0.59 -14.27 2.94 -171.39 -0.50 -14.77 16 3 C -0.26 -6.91 9.67 -15.06 -0.15 -7.06 16 4 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 5 C 0.00 0.03 5.11 -17.43 -0.09 -0.06 16 6 N -0.91 -26.23 10.50 55.49 0.58 -25.65 16 7 Si 0.91 21.57 29.57 -169.99 -5.03 16.54 16 8 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 C 0.17 3.37 3.45 -66.10 -0.23 3.14 16 12 H 0.08 1.49 7.90 -51.93 -0.41 1.08 16 13 C -0.15 -2.37 6.59 -24.58 -0.16 -2.53 16 14 C 0.10 1.29 6.69 -2.53 -0.02 1.27 16 15 N -0.61 -9.87 3.33 -170.52 -0.57 -10.44 16 16 C 0.52 8.29 7.85 -10.99 -0.09 8.21 16 17 O -0.55 -10.91 16.31 5.56 0.09 -10.82 16 18 C -0.13 -1.42 4.69 -27.88 -0.13 -1.55 16 19 C -0.07 -0.73 4.64 -27.88 -0.13 -0.86 16 20 C -0.08 -0.77 5.13 -104.63 -0.54 -1.31 16 21 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 26 C 0.09 1.67 6.51 -3.06 -0.02 1.65 16 27 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 28 H 0.00 0.02 6.03 -51.93 -0.31 -0.29 16 29 H 0.05 1.28 7.08 -51.93 -0.37 0.91 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.29 6.05 -51.93 -0.31 0.98 16 33 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.90 7.85 -51.93 -0.41 0.50 16 37 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 38 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 44 H 0.07 1.62 7.13 -51.93 -0.37 1.25 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -31.77 363.56 -10.12 -41.90 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.14 Total: -0.47 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.04 Total: -1.78 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.49 Total: -50.86 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.77 -10.12 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972786303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.304 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds