Wall clock time and date at job start Tue Mar 31 2020 08:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36932 * 120.00459 * 2 1 4 4 H 1.07999 * 119.99975 * 203.30330 * 3 2 1 5 5 C 1.38812 * 119.99971 * 23.30001 * 3 2 1 6 6 N 1.31617 * 119.99714 * 13.98753 * 5 3 2 7 7 Si 1.86799 * 120.00110 * 193.99111 * 5 3 2 8 8 H 1.48493 * 109.47446 * 59.99709 * 7 5 3 9 9 H 1.48504 * 109.46796 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46953 * 299.99639 * 7 5 3 11 11 C 1.46511 * 119.99762 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88360 * 182.43025 * 11 2 1 13 13 C 1.55153 * 111.00238 * 58.54603 * 11 2 1 14 14 C 1.54325 * 102.94087 * 206.38190 * 13 11 2 15 15 N 1.47024 * 107.27091 * 22.19687 * 14 13 11 16 16 C 1.34776 * 125.64933 * 181.10280 * 15 14 13 17 17 O 1.21281 * 119.99710 * 179.97438 * 16 15 14 18 18 C 1.50693 * 120.00064 * 359.94434 * 16 15 14 19 19 C 1.52995 * 109.47175 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47461 * 179.97438 * 19 18 16 21 21 C 1.38231 * 120.00212 * 269.73316 * 20 19 18 22 22 C 1.38238 * 120.00074 * 179.74074 * 21 20 19 23 23 C 1.38239 * 119.99545 * 0.52882 * 22 21 20 24 24 C 1.38232 * 120.00037 * 359.74111 * 23 22 21 25 25 C 1.38227 * 120.00216 * 359.97438 * 24 23 22 26 26 C 1.47429 * 108.70028 * 1.05848 * 15 14 13 27 27 H 1.09002 * 109.47195 * 275.16828 * 1 2 3 28 28 H 1.08998 * 109.47126 * 35.17074 * 1 2 3 29 29 H 1.08998 * 109.47541 * 155.17000 * 1 2 3 30 30 H 0.96997 * 120.00015 * 179.97438 * 6 5 3 31 31 H 1.08997 * 110.72332 * 324.74813 * 13 11 2 32 32 H 1.08998 * 110.71833 * 88.02606 * 13 11 2 33 33 H 1.09006 * 109.87992 * 141.60734 * 14 13 11 34 34 H 1.08994 * 109.88534 * 262.77752 * 14 13 11 35 35 H 1.08997 * 109.47389 * 300.00084 * 18 16 15 36 36 H 1.09005 * 109.47441 * 60.00091 * 18 16 15 37 37 H 1.09001 * 109.47480 * 300.00298 * 19 18 16 38 38 H 1.09007 * 109.47462 * 60.00207 * 19 18 16 39 39 H 1.08005 * 120.00118 * 359.97438 * 21 20 19 40 40 H 1.07996 * 119.99923 * 180.28863 * 22 21 20 41 41 H 1.08001 * 119.99557 * 179.77071 * 23 22 21 42 42 H 1.08000 * 119.99738 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00208 * 179.97438 * 25 24 23 44 44 H 1.09002 * 110.36370 * 217.03297 * 26 15 14 45 45 H 1.08997 * 110.46454 * 94.75905 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1636 1.2239 -0.3700 5 6 1.5406 2.3390 0.4755 6 7 0.4274 2.2556 1.1727 7 14 2.3009 4.0091 0.1258 8 1 2.3751 4.2217 -1.3420 9 1 1.4643 5.0719 0.7388 10 1 3.6680 4.0612 0.7032 11 6 2.1975 -1.2689 0.0006 12 1 3.2729 -1.0966 0.0437 13 6 1.8209 -2.1289 -1.2347 14 6 2.0904 -3.5686 -0.7486 15 7 2.0433 -3.5492 0.7208 16 6 2.2500 -4.6089 1.5274 17 8 2.1864 -4.4762 2.7313 18 6 2.5592 -5.9589 0.9335 19 6 2.7478 -6.9795 2.0575 20 6 3.0565 -8.3298 1.4636 21 6 2.0287 -9.2040 1.1630 22 6 2.3116 -10.4404 0.6132 23 6 3.6229 -10.8068 0.3742 24 6 4.6510 -9.9348 0.6800 25 6 4.3677 -8.6962 1.2243 26 6 1.7336 -2.1781 1.1657 27 1 -0.3634 0.0926 1.0235 28 1 -0.3633 0.8400 -0.5919 29 1 -0.3634 -0.9326 -0.4315 30 1 0.0020 3.0614 1.5053 31 1 0.7692 -1.9984 -1.4894 32 1 2.4580 -1.8832 -2.0843 33 1 1.3236 -4.2400 -1.1351 34 1 3.0749 -3.8948 -1.0836 35 1 1.7343 -6.2720 0.2936 36 1 3.4732 -5.8953 0.3429 37 1 3.5725 -6.6667 2.6979 38 1 1.8335 -7.0432 2.6477 39 1 1.0045 -8.9195 1.3541 40 1 1.5084 -11.1215 0.3740 41 1 3.8441 -11.7743 -0.0519 42 1 5.6754 -10.2210 0.4929 43 1 5.1709 -8.0150 1.4636 44 1 2.2856 -1.9407 2.0751 45 1 0.6625 -2.0644 1.3324 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972786304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:09 Heat of formation + Delta-G solvation = 8.377793 kcal Electronic energy + Delta-G solvation = -23886.857897 eV Core-core repulsion = 20483.557746 eV Total energy + Delta-G solvation = -3403.300151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.96034 -39.30898 -37.47221 -34.80216 -34.12801 -31.70721 -31.11851 -30.10858 -29.59075 -27.84482 -26.07766 -25.00011 -23.09972 -22.79826 -22.29894 -21.08675 -19.32096 -18.85066 -17.24991 -17.06695 -16.60679 -16.10030 -15.56324 -15.31496 -15.00781 -14.80751 -14.24891 -13.66648 -13.50165 -13.43155 -13.23978 -13.11013 -13.02079 -12.57566 -12.39318 -12.25474 -11.97454 -11.91262 -11.48328 -11.46140 -11.19176 -10.98964 -10.91085 -10.80161 -10.52425 -10.48635 -10.30208 -9.91251 -9.85137 -9.62083 -9.15739 -8.90425 -8.60724 -8.30237 -6.81866 -5.77820 -3.25839 1.11291 1.16523 2.85548 3.22767 3.36941 3.42466 3.43328 3.57741 4.43279 4.48031 4.62177 4.75639 4.83870 4.93420 4.98721 5.00100 5.04344 5.25813 5.28490 5.32336 5.35393 5.43323 5.50580 5.63338 5.68284 5.76663 5.81680 5.87264 5.89732 6.01114 6.05036 6.23547 6.27577 6.30354 6.38392 6.44690 6.54307 6.63185 6.76208 6.77755 6.86797 7.30078 7.67889 7.75955 7.83595 8.33166 8.41101 9.16792 9.79256 10.28327 11.26506 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.037408 B = 0.002396 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.318288 B =11683.232328 C =11728.350396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.077 0.923 13 C -0.154 4.154 14 C 0.104 3.896 15 N -0.615 5.615 16 C 0.522 3.478 17 O -0.548 6.548 18 C -0.128 4.128 19 C -0.067 4.067 20 C -0.078 4.078 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.117 4.117 26 C 0.086 3.914 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.003 0.997 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 -23.223 -4.654 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.019 4.019 15 N -0.349 5.349 16 C 0.310 3.690 17 O -0.426 6.426 18 C -0.168 4.168 19 C -0.104 4.104 20 C -0.078 4.078 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.135 4.135 26 C -0.038 4.038 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.381 -23.015 -3.885 23.749 hybrid contribution 0.273 0.882 -0.230 0.951 sum 4.655 -22.134 -4.115 22.989 Atomic orbital electron populations 1.20812 0.82490 0.95604 0.99695 1.43851 1.01862 0.99872 1.84873 1.19158 0.98809 0.85219 1.36023 0.91274 1.25070 0.97979 0.98707 0.97645 1.70059 1.20116 1.27598 1.36919 0.86297 0.78462 0.83574 0.77957 1.20992 1.21609 1.20846 1.21462 0.96367 0.85775 0.90202 0.90445 1.23216 1.02839 0.92838 1.00535 1.22025 1.00640 0.99099 0.80171 1.48582 1.69256 1.09835 1.07215 1.20280 0.76974 0.85225 0.86476 1.90699 1.52300 1.85074 1.14519 1.21601 1.03809 0.92024 0.99366 1.20362 1.03920 0.89567 0.96588 1.19977 0.93352 0.96035 0.98478 1.21115 0.99058 0.93987 0.99317 1.21153 0.96674 0.96608 0.99299 1.21142 0.93016 0.99663 1.00775 1.21150 0.99179 0.94212 0.99182 1.21115 0.96186 0.96681 0.99479 1.23076 1.01043 0.79373 1.00285 0.94859 0.93945 0.97905 0.93532 0.90515 0.90590 0.92115 0.91882 0.89082 0.89023 0.90087 0.90122 0.85999 0.86173 0.86311 0.86167 0.85975 0.90977 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 7.60 59.84 0.46 4.23 16 2 N -0.58 -14.15 2.96 -171.03 -0.51 -14.66 16 3 C -0.26 -7.03 9.60 -15.06 -0.14 -7.18 16 4 H 0.07 1.80 7.86 -52.49 -0.41 1.38 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -26.01 10.78 55.49 0.60 -25.41 16 7 Si 0.91 21.52 29.58 -169.99 -5.03 16.49 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.17 3.40 3.53 -65.78 -0.23 3.17 16 12 H 0.08 1.55 7.95 -51.93 -0.41 1.13 16 13 C -0.15 -2.38 6.49 -24.90 -0.16 -2.54 16 14 C 0.10 1.34 6.49 -3.06 -0.02 1.32 16 15 N -0.61 -9.84 3.33 -170.52 -0.57 -10.41 16 16 C 0.52 8.22 7.85 -10.99 -0.09 8.13 16 17 O -0.55 -10.76 16.24 5.56 0.09 -10.67 16 18 C -0.13 -1.41 4.87 -27.89 -0.14 -1.55 16 19 C -0.07 -0.72 4.63 -27.88 -0.13 -0.85 16 20 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 21 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.13 -1.01 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 25 C -0.12 -1.06 9.70 -39.59 -0.38 -1.44 16 26 C 0.09 1.68 6.47 -2.53 -0.02 1.66 16 27 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 28 H 0.04 1.08 7.39 -51.93 -0.38 0.70 16 29 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.08 1.24 6.36 -51.93 -0.33 0.91 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 38 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 45 H 0.07 1.40 7.06 -51.93 -0.37 1.03 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -31.42 365.23 -10.20 -41.61 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.23 Total: -0.58 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.06 Total: -1.88 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.47 Total: -50.48 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.42 -10.20 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972786304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.993 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds