Wall clock time and date at job start Tue Mar 31 2020 09:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38237 * 119.99736 * 2 1 4 4 C 1.38241 * 119.99357 * 180.21625 * 3 2 1 5 5 C 1.50696 * 119.99308 * 179.81010 * 4 3 2 6 6 C 1.38226 * 120.00062 * 359.52575 * 4 3 2 7 7 C 1.50709 * 119.99833 * 180.26017 * 6 4 3 8 8 N 1.46895 * 109.47182 * 98.76139 * 7 6 4 9 9 C 1.46956 * 111.00058 * 288.02785 * 8 7 6 10 10 C 1.53044 * 109.36558 * 176.81255 * 9 8 7 11 11 N 1.46955 * 109.36596 * 58.40267 * 10 9 8 12 12 C 1.46907 * 111.00313 * 176.81410 * 11 10 9 13 13 C 1.50699 * 109.46650 * 293.79691 * 12 11 10 14 14 H 1.08000 * 120.00381 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99938 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00209 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47126 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47063 * 120.00058 * 17 15 13 20 20 H 1.48495 * 109.47358 * 239.99846 * 17 15 13 21 21 C 1.46956 * 110.87790 * 300.68018 * 11 10 9 22 22 C 1.46955 * 111.00110 * 164.23033 * 8 7 6 23 23 C 1.38232 * 120.00480 * 0.28281 * 6 4 3 24 24 C 1.50697 * 120.00314 * 179.97438 * 23 6 4 25 25 C 1.38234 * 119.99870 * 179.78997 * 2 1 3 26 26 H 1.08998 * 109.46879 * 270.20874 * 1 2 3 27 27 H 1.08996 * 109.46988 * 30.21335 * 1 2 3 28 28 H 1.08999 * 109.47009 * 150.21063 * 1 2 3 29 29 H 1.07993 * 120.00149 * 0.02562 * 3 2 1 30 30 H 1.09008 * 109.47054 * 264.49267 * 5 4 3 31 31 H 1.08995 * 109.47669 * 24.49130 * 5 4 3 32 32 H 1.09005 * 109.47054 * 144.49655 * 5 4 3 33 33 H 1.09003 * 109.46695 * 218.76519 * 7 6 4 34 34 H 1.09006 * 109.46807 * 338.75768 * 7 6 4 35 35 H 1.09002 * 109.48804 * 296.78261 * 9 8 7 36 36 H 1.09003 * 109.48983 * 56.84155 * 9 8 7 37 37 H 1.09002 * 109.49204 * 298.43350 * 10 9 8 38 38 H 1.09004 * 109.48986 * 178.36635 * 10 9 8 39 39 H 1.09000 * 109.46804 * 53.79687 * 12 11 10 40 40 H 1.08998 * 109.47043 * 173.80012 * 12 11 10 41 41 H 0.96995 * 120.00219 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.48804 * 299.34954 * 21 11 10 43 43 H 1.09004 * 109.51180 * 179.30108 * 21 11 10 44 44 H 1.09004 * 109.48485 * 303.15413 * 22 8 7 45 45 H 1.09002 * 109.48825 * 63.21588 * 22 8 7 46 46 H 1.08999 * 109.47342 * 90.00208 * 24 23 6 47 47 H 1.09003 * 109.47260 * 209.99997 * 24 23 6 48 48 H 1.09003 * 109.47475 * 329.99898 * 24 23 6 49 49 H 1.07999 * 120.00157 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0045 5 6 4.3340 2.5022 -0.0088 6 6 4.2717 0.0000 0.0009 7 6 5.7788 0.0000 0.0019 8 7 6.2675 -0.2053 1.3718 9 6 6.0422 0.9903 2.1961 10 6 6.4911 0.7088 3.6319 11 7 7.9114 0.3317 3.6334 12 6 8.4003 0.1263 5.0034 13 6 8.3801 1.4377 5.7457 14 1 8.0388 2.3340 5.2493 15 6 8.7975 1.4931 7.0586 16 7 9.2127 0.4014 7.6633 17 14 8.7732 3.1187 7.9785 18 1 8.2664 4.1878 7.0811 19 1 7.8842 3.0042 9.1625 20 1 10.1491 3.4563 8.4235 21 6 8.1367 -0.8639 2.8091 22 6 7.6879 -0.5824 1.3733 23 6 3.5806 -1.1971 0.0049 24 6 4.3341 -2.5022 0.0102 25 6 2.1982 -1.1971 0.0044 26 1 -0.3633 0.0037 1.0277 27 1 -0.3633 0.8880 -0.5171 28 1 -0.3633 -0.8919 -0.5106 29 1 1.6582 2.1324 0.0004 30 1 4.5977 2.7661 -1.0331 31 1 3.7072 3.2851 0.4181 32 1 5.2422 2.3995 0.5852 33 1 6.1425 -0.8039 -0.6381 34 1 6.1423 0.9564 -0.3742 35 1 6.6168 1.8239 1.7923 36 1 4.9817 1.2421 2.1893 37 1 5.8978 -0.1070 4.0451 38 1 6.3519 1.6036 4.2385 39 1 7.7578 -0.5906 5.5147 40 1 9.4199 -0.2576 4.9716 41 1 9.5066 0.4405 8.5868 42 1 7.5622 -1.6976 3.2129 43 1 9.1971 -1.1162 2.8158 44 1 7.8271 -1.4773 0.7667 45 1 8.2811 0.2334 0.9601 46 1 4.5151 -2.8131 1.0391 47 1 3.7453 -3.2638 -0.5012 48 1 5.2868 -2.3738 -0.5036 49 1 1.6582 -2.1324 0.0082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078527216.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:08 Heat of formation + Delta-G solvation = 22.318316 kcal Electronic energy + Delta-G solvation = -25279.708326 eV Core-core repulsion = 22012.845776 eV Total energy + Delta-G solvation = -3266.862550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18187 -38.42654 -35.46578 -33.64071 -33.48741 -32.29208 -30.38517 -29.15010 -28.00534 -27.05591 -26.74000 -25.03355 -23.30289 -22.84798 -21.35935 -20.77576 -19.86525 -19.13961 -16.33477 -16.19829 -16.04479 -15.77191 -14.67170 -14.44899 -14.40604 -14.19552 -14.06254 -13.94735 -13.52150 -13.34771 -13.14559 -13.02679 -12.97834 -12.71114 -12.64873 -12.46042 -12.01864 -11.85837 -11.73005 -11.51468 -11.28173 -11.16006 -10.90585 -10.87030 -10.79077 -10.66102 -10.54456 -10.30031 -10.23694 -9.68565 -9.14557 -8.52433 -8.44425 -8.41227 -8.02452 -7.19291 -6.01057 -4.02263 1.32382 1.40502 3.31761 3.39046 3.43824 3.61487 4.29269 4.43927 4.68263 4.71643 4.81388 4.95744 4.99509 5.09130 5.25521 5.31529 5.34444 5.35593 5.40829 5.44124 5.48606 5.54504 5.58885 5.59801 5.68157 5.72868 5.75405 5.81557 5.83196 5.90044 5.94497 6.00203 6.11922 6.20939 6.23229 6.29613 6.46335 6.53167 6.56113 6.62971 6.73207 6.74281 7.05226 7.23333 7.28930 7.38653 7.42461 7.82510 8.11739 8.23868 8.58113 9.05650 9.61938 11.09909 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.003393 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.630066 B = 8251.364929 C = 8851.276564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.130 4.130 4 C -0.070 4.070 5 C -0.128 4.128 6 C -0.080 4.080 7 C 0.090 3.910 8 N -0.530 5.530 9 C 0.058 3.942 10 C 0.068 3.932 11 N -0.538 5.538 12 C 0.194 3.806 13 C -0.505 4.505 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.057 3.943 22 C 0.061 3.939 23 C -0.054 4.054 24 C -0.109 4.109 25 C -0.131 4.131 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.084 0.916 39 H -0.009 1.009 40 H 0.029 0.971 41 H 0.260 0.740 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.362 -2.172 -18.829 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.070 4.070 5 C -0.184 4.184 6 C -0.080 4.080 7 C -0.037 4.037 8 N -0.255 5.255 9 C -0.070 4.070 10 C -0.060 4.060 11 N -0.264 5.264 12 C 0.068 3.932 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.072 4.072 22 C -0.067 4.067 23 C -0.055 4.055 24 C -0.166 4.166 25 C -0.149 4.149 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.103 0.897 39 H 0.009 0.991 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.264 -2.234 -18.647 22.992 hybrid contribution -0.013 0.785 0.711 1.059 sum -13.277 -1.449 -17.936 22.363 Atomic orbital electron populations 1.20764 0.91520 1.02383 1.02216 1.19824 0.95742 0.93178 0.99681 1.20808 0.93365 0.97349 1.03298 1.19737 0.93588 0.94773 0.98920 1.21061 1.00922 0.94073 1.02348 1.19437 0.94980 0.92058 1.01547 1.21030 0.91069 1.00676 0.90952 1.62147 1.17825 1.35894 1.09611 1.22368 1.00014 0.90348 0.94267 1.21981 0.89081 1.01007 0.93965 1.62289 1.16151 1.32450 1.15472 1.19698 0.95026 0.96744 0.81683 1.21195 1.42686 0.94615 0.95918 0.91903 1.24994 0.95506 0.96568 0.97594 1.69973 1.44304 1.27322 1.12239 0.86459 0.77609 0.83811 0.79649 1.19678 1.21120 1.21035 1.22048 0.99932 0.92901 0.92294 1.22172 0.87265 0.99503 0.97738 1.19683 0.93268 0.94995 0.97546 1.20768 0.99514 0.93422 1.02883 1.20830 0.93500 0.97311 1.03290 0.91284 0.91800 0.91788 0.86482 0.91433 0.91601 0.90388 0.90232 0.93892 0.94407 0.90890 0.95434 0.89725 0.99113 0.95275 0.93011 0.95195 0.91098 0.91280 0.94380 0.90490 0.92451 0.91510 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.08 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.13 -1.48 9.34 -39.58 -0.37 -1.85 16 4 C -0.07 -0.84 5.16 -104.63 -0.54 -1.38 16 5 C -0.13 -1.36 8.64 36.00 0.31 -1.05 16 6 C -0.08 -1.01 4.83 -104.62 -0.50 -1.51 16 7 C 0.09 1.12 4.28 -4.97 -0.02 1.10 16 8 N -0.53 -7.87 4.66 -235.91 -1.10 -8.97 16 9 C 0.06 0.95 4.09 -3.77 -0.02 0.93 16 10 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 11 N -0.54 -11.86 4.70 -235.91 -1.11 -12.97 16 12 C 0.19 5.13 4.72 -4.97 -0.02 5.11 16 13 C -0.51 -14.33 8.47 -34.44 -0.29 -14.62 16 14 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 22 C 0.06 0.92 5.58 -3.77 -0.02 0.90 16 23 C -0.05 -0.66 5.88 -104.63 -0.62 -1.28 16 24 C -0.11 -1.16 9.60 36.00 0.35 -0.81 16 25 C -0.13 -1.49 9.36 -39.58 -0.37 -1.87 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 32 H 0.08 0.92 3.87 -51.93 -0.20 0.72 16 33 H 0.08 0.89 6.12 -51.93 -0.32 0.58 16 34 H 0.04 0.52 6.26 -51.93 -0.33 0.20 16 35 H 0.04 0.63 7.27 -51.93 -0.38 0.25 16 36 H 0.07 1.15 6.01 -51.93 -0.31 0.84 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.83 6.79 -51.93 -0.35 1.48 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 44 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 48 H 0.07 0.68 6.10 -51.93 -0.32 0.36 16 49 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -30.54 373.21 -11.82 -42.37 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.45 Total: -2.03 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.51 Total: -14.56 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -1.47 Total: -48.17 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.54 -11.82 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527216.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.683 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds