Wall clock time and date at job start Tue Mar 31 2020 09:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38237 * 119.99736 * 2 1 4 4 C 1.38241 * 119.99357 * 180.21625 * 3 2 1 5 5 C 1.50696 * 119.99308 * 179.81010 * 4 3 2 6 6 C 1.38226 * 120.00062 * 359.52575 * 4 3 2 7 7 C 1.50709 * 119.99833 * 180.26017 * 6 4 3 8 8 N 1.46895 * 109.47182 * 98.76139 * 7 6 4 9 9 C 1.46956 * 111.00058 * 288.02785 * 8 7 6 10 10 C 1.53044 * 109.36558 * 176.81255 * 9 8 7 11 11 N 1.46955 * 109.36596 * 58.40267 * 10 9 8 12 12 C 1.46907 * 111.00313 * 176.81410 * 11 10 9 13 13 C 1.50699 * 109.46650 * 293.79691 * 12 11 10 14 14 H 1.08000 * 120.00381 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99938 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00209 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47126 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47063 * 120.00058 * 17 15 13 20 20 H 1.48495 * 109.47358 * 239.99846 * 17 15 13 21 21 C 1.46956 * 110.87790 * 300.68018 * 11 10 9 22 22 C 1.46955 * 111.00110 * 164.23033 * 8 7 6 23 23 C 1.38232 * 120.00480 * 0.28281 * 6 4 3 24 24 C 1.50697 * 120.00314 * 179.97438 * 23 6 4 25 25 C 1.38234 * 119.99870 * 179.78997 * 2 1 3 26 26 H 1.08998 * 109.46879 * 270.20874 * 1 2 3 27 27 H 1.08996 * 109.46988 * 30.21335 * 1 2 3 28 28 H 1.08999 * 109.47009 * 150.21063 * 1 2 3 29 29 H 1.07993 * 120.00149 * 0.02562 * 3 2 1 30 30 H 1.09008 * 109.47054 * 264.49267 * 5 4 3 31 31 H 1.08995 * 109.47669 * 24.49130 * 5 4 3 32 32 H 1.09005 * 109.47054 * 144.49655 * 5 4 3 33 33 H 1.09003 * 109.46695 * 218.76519 * 7 6 4 34 34 H 1.09006 * 109.46807 * 338.75768 * 7 6 4 35 35 H 1.09002 * 109.48804 * 296.78261 * 9 8 7 36 36 H 1.09003 * 109.48983 * 56.84155 * 9 8 7 37 37 H 1.09002 * 109.49204 * 298.43350 * 10 9 8 38 38 H 1.09004 * 109.48986 * 178.36635 * 10 9 8 39 39 H 1.09000 * 109.46804 * 53.79687 * 12 11 10 40 40 H 1.08998 * 109.47043 * 173.80012 * 12 11 10 41 41 H 0.96995 * 120.00219 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.48804 * 299.34954 * 21 11 10 43 43 H 1.09004 * 109.51180 * 179.30108 * 21 11 10 44 44 H 1.09004 * 109.48485 * 303.15413 * 22 8 7 45 45 H 1.09002 * 109.48825 * 63.21588 * 22 8 7 46 46 H 1.08999 * 109.47342 * 90.00208 * 24 23 6 47 47 H 1.09003 * 109.47260 * 209.99997 * 24 23 6 48 48 H 1.09003 * 109.47475 * 329.99898 * 24 23 6 49 49 H 1.07999 * 120.00157 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0045 5 6 4.3340 2.5022 -0.0088 6 6 4.2717 0.0000 0.0009 7 6 5.7788 0.0000 0.0019 8 7 6.2675 -0.2053 1.3718 9 6 6.0422 0.9903 2.1961 10 6 6.4911 0.7088 3.6319 11 7 7.9114 0.3317 3.6334 12 6 8.4003 0.1263 5.0034 13 6 8.3801 1.4377 5.7457 14 1 8.0388 2.3340 5.2493 15 6 8.7975 1.4931 7.0586 16 7 9.2127 0.4014 7.6633 17 14 8.7732 3.1187 7.9785 18 1 8.2664 4.1878 7.0811 19 1 7.8842 3.0042 9.1625 20 1 10.1491 3.4563 8.4235 21 6 8.1367 -0.8639 2.8091 22 6 7.6879 -0.5824 1.3733 23 6 3.5806 -1.1971 0.0049 24 6 4.3341 -2.5022 0.0102 25 6 2.1982 -1.1971 0.0044 26 1 -0.3633 0.0037 1.0277 27 1 -0.3633 0.8880 -0.5171 28 1 -0.3633 -0.8919 -0.5106 29 1 1.6582 2.1324 0.0004 30 1 4.5977 2.7661 -1.0331 31 1 3.7072 3.2851 0.4181 32 1 5.2422 2.3995 0.5852 33 1 6.1425 -0.8039 -0.6381 34 1 6.1423 0.9564 -0.3742 35 1 6.6168 1.8239 1.7923 36 1 4.9817 1.2421 2.1893 37 1 5.8978 -0.1070 4.0451 38 1 6.3519 1.6036 4.2385 39 1 7.7578 -0.5906 5.5147 40 1 9.4199 -0.2576 4.9716 41 1 9.5066 0.4405 8.5868 42 1 7.5622 -1.6976 3.2129 43 1 9.1971 -1.1162 2.8158 44 1 7.8271 -1.4773 0.7667 45 1 8.2811 0.2334 0.9601 46 1 4.5151 -2.8131 1.0391 47 1 3.7453 -3.2638 -0.5012 48 1 5.2868 -2.3738 -0.5036 49 1 1.6582 -2.1324 0.0082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078527216.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:07 Heat of formation + Delta-G solvation = 4.356670 kcal Electronic energy + Delta-G solvation = -25280.487202 eV Core-core repulsion = 22012.845776 eV Total energy + Delta-G solvation = -3267.641425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13735 -39.77228 -36.88647 -34.92390 -34.48303 -33.98969 -31.82986 -30.53305 -28.79900 -28.59984 -27.57245 -26.52337 -24.70736 -24.18337 -23.15577 -21.61889 -20.85807 -20.51619 -18.50236 -17.37283 -17.11290 -16.81569 -16.47169 -15.87725 -15.68995 -15.45784 -15.22313 -15.14100 -14.90234 -14.61419 -14.13976 -13.97291 -13.92680 -13.80818 -13.56635 -13.51768 -13.40898 -13.24522 -13.00060 -12.77074 -12.70414 -12.48093 -12.37571 -12.24427 -12.13826 -12.01543 -11.93955 -11.70691 -11.59250 -11.37542 -11.17206 -10.63512 -9.40098 -9.35321 -9.18222 -9.01749 -8.21863 -6.32295 0.45362 0.54225 1.40117 1.40446 1.54371 2.39314 2.69190 3.10157 3.17090 3.29357 3.81166 3.90102 4.00048 4.02867 4.09710 4.19975 4.21371 4.34767 4.39615 4.45565 4.48274 4.56337 4.65443 4.66775 4.69782 4.76161 4.79048 4.84318 4.85225 4.85733 4.94743 4.96263 5.01968 5.04607 5.06080 5.09197 5.15002 5.21265 5.27017 5.41015 5.46892 5.62872 5.66966 5.73869 5.83642 6.01507 6.08585 6.12005 6.23553 6.34021 6.61778 6.83702 7.37548 8.89710 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.003393 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.630066 B = 8251.364929 C = 8851.276564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.080 4.080 5 C -0.125 4.125 6 C -0.099 4.099 7 C 0.096 3.904 8 N -0.536 5.536 9 C 0.076 3.924 10 C 0.072 3.928 11 N -0.542 5.542 12 C 0.209 3.791 13 C -0.523 4.523 14 H 0.062 0.938 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.277 1.277 21 C 0.055 3.945 22 C 0.071 3.929 23 C -0.068 4.068 24 C -0.105 4.105 25 C -0.144 4.144 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.009 0.991 38 H 0.065 0.935 39 H -0.043 1.043 40 H 0.005 0.995 41 H 0.265 0.735 42 H 0.019 0.981 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.040 0.960 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.454 -1.216 -20.458 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.160 4.160 4 C -0.081 4.081 5 C -0.181 4.181 6 C -0.100 4.100 7 C -0.030 4.030 8 N -0.261 5.261 9 C -0.052 4.052 10 C -0.057 4.057 11 N -0.267 5.267 12 C 0.083 3.917 13 C -0.561 4.561 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.795 3.205 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.202 1.202 21 C -0.074 4.074 22 C -0.057 4.057 23 C -0.068 4.068 24 C -0.162 4.162 25 C -0.162 4.162 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.150 0.850 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.027 0.973 38 H 0.083 0.917 39 H -0.025 1.025 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.365 -1.283 -20.308 24.909 hybrid contribution 0.274 0.420 1.186 1.288 sum -14.092 -0.863 -19.122 23.769 Atomic orbital electron populations 1.20805 0.89637 1.03550 1.02728 1.20198 0.97281 0.92943 0.98564 1.21078 0.93376 0.98273 1.03303 1.19969 0.94153 0.95137 0.98814 1.21041 1.00308 0.93791 1.02958 1.19544 0.95025 0.92575 1.02840 1.21031 0.91154 1.01601 0.89253 1.62103 1.17714 1.35043 1.11274 1.22113 1.00216 0.91074 0.91781 1.21938 0.87812 0.99290 0.96623 1.62232 1.17202 1.34259 1.13051 1.19346 0.93055 0.95290 0.84014 1.21472 1.42893 0.95079 0.96631 0.91939 1.25942 0.94777 1.00512 0.98508 1.70100 1.44941 1.29743 1.12776 0.85313 0.77923 0.79076 0.78187 1.18642 1.20412 1.20246 1.22165 1.00131 0.91134 0.93955 1.22105 0.87312 1.01044 0.95204 1.19946 0.93894 0.95441 0.97542 1.20743 0.99970 0.93288 1.02178 1.21101 0.93508 0.98247 1.03300 0.90971 0.90678 0.90661 0.85036 0.90175 0.90794 0.91626 0.88638 0.93306 0.94196 0.90118 0.97273 0.91664 1.02524 0.97700 0.92658 0.96279 0.90931 0.88088 0.94147 0.91959 0.90825 0.90991 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.09 -1.81 5.88 -19.86 -0.12 -1.92 16 3 C -0.14 -2.99 9.34 22.27 0.21 -2.79 16 4 C -0.08 -1.81 5.16 -19.87 -0.10 -1.91 16 5 C -0.12 -2.44 8.64 71.23 0.62 -1.82 16 6 C -0.10 -2.36 4.83 -19.87 -0.10 -2.45 16 7 C 0.10 2.19 4.28 85.56 0.37 2.56 16 8 N -0.54 -15.24 4.66 -900.28 -4.19 -19.44 16 9 C 0.08 2.46 4.09 86.31 0.35 2.81 16 10 C 0.07 3.00 5.43 86.31 0.47 3.47 16 11 N -0.54 -24.57 4.70 -900.28 -4.23 -28.80 16 12 C 0.21 11.62 4.72 85.56 0.40 12.03 16 13 C -0.52 -30.39 8.47 25.60 0.22 -30.17 16 14 H 0.06 3.57 7.13 -2.91 -0.02 3.54 16 15 C 0.00 0.03 5.46 84.65 0.46 0.49 16 16 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 17 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 C 0.05 2.04 5.61 86.31 0.48 2.52 16 22 C 0.07 2.02 5.58 86.31 0.48 2.50 16 23 C -0.07 -1.55 5.88 -19.87 -0.12 -1.67 16 24 C -0.11 -2.07 9.60 71.23 0.68 -1.38 16 25 C -0.14 -3.04 9.36 22.27 0.21 -2.83 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 28 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 29 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 32 H 0.07 1.44 3.87 -2.38 -0.01 1.43 16 33 H 0.10 1.88 6.12 -2.39 -0.01 1.86 16 34 H 0.05 1.08 6.26 -2.38 -0.01 1.06 16 35 H 0.04 1.28 7.27 -2.39 -0.02 1.27 16 36 H 0.08 2.50 6.01 -2.39 -0.01 2.48 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.06 2.92 6.79 -2.39 -0.02 2.91 16 39 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 40 H 0.00 0.29 8.03 -2.39 -0.02 0.27 16 41 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 44 H 0.10 2.28 8.02 -2.39 -0.02 2.26 16 45 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 48 H 0.07 1.30 6.10 -2.39 -0.01 1.29 16 49 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -66.97 373.21 0.03 -66.93 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.91 Total: 12.85 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 5.23 Total: -21.42 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -8.14 Total: -105.33 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.97 0.03 -66.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527216.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.291 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds