Wall clock time and date at job start Tue Mar 31 2020 08:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.52408 * 2 1 4 4 C 1.53126 * 109.57185 * 239.84857 * 2 1 3 5 5 C 1.53033 * 109.27588 * 182.40489 * 4 2 1 6 6 N 1.46854 * 109.52456 * 59.18109 * 5 4 2 7 7 C 1.46899 * 111.00051 * 174.15791 * 6 5 4 8 8 C 1.53004 * 109.46981 * 294.20937 * 7 6 5 9 9 H 1.08998 * 109.47091 * 55.00584 * 8 7 6 10 10 C 1.47199 * 109.46990 * 294.99878 * 8 7 6 11 11 N 6.02628 * 123.55931 * 187.87134 * 2 1 3 12 12 C 1.52998 * 109.46801 * 175.00374 * 8 7 6 13 13 C 1.50701 * 109.46980 * 185.00015 * 12 8 7 14 14 H 1.07996 * 120.00075 * 359.97438 * 13 12 8 15 15 C 1.37884 * 120.00037 * 179.97438 * 13 12 8 16 16 N 1.31510 * 119.99714 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99810 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46674 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47322 * 299.99614 * 17 15 13 20 20 H 1.48502 * 109.47285 * 60.00061 * 17 15 13 21 21 C 1.46847 * 111.19345 * 298.25725 * 6 5 4 22 22 C 1.53028 * 109.52539 * 61.74209 * 21 6 5 23 23 H 1.09001 * 109.50662 * 180.84179 * 22 21 6 24 24 N 1.46501 * 109.50834 * 60.75808 * 22 21 6 25 25 C 1.36879 * 126.39656 * 309.51174 * 24 22 21 26 26 C 1.34668 * 106.81764 * 179.97438 * 25 24 22 27 27 N 1.34123 * 108.02234 * 0.02562 * 26 25 24 28 28 C 1.30506 * 109.25386 * 359.72139 * 27 26 25 29 29 H 1.09004 * 109.47016 * 299.86334 * 1 2 3 30 30 H 1.09000 * 109.47606 * 59.86867 * 1 2 3 31 31 H 1.09000 * 109.47029 * 179.87186 * 1 2 3 32 32 H 1.09001 * 109.50315 * 302.34974 * 4 2 1 33 33 H 1.09002 * 109.50430 * 62.46740 * 4 2 1 34 34 H 1.08997 * 109.46685 * 299.16439 * 5 4 2 35 35 H 1.09004 * 109.46213 * 179.19258 * 5 4 2 36 36 H 1.09000 * 109.47046 * 174.21140 * 7 6 5 37 37 H 1.09000 * 109.46910 * 54.20654 * 7 6 5 38 38 H 1.09003 * 109.47658 * 64.99696 * 12 8 7 39 39 H 1.09004 * 109.46904 * 304.99814 * 12 8 7 40 40 H 0.97007 * 120.00493 * 359.97438 * 16 15 13 41 41 H 1.09001 * 109.45908 * 181.75814 * 21 6 5 42 42 H 1.08999 * 109.46476 * 301.72066 * 21 6 5 43 43 H 1.07999 * 126.59230 * 0.02562 * 25 24 22 44 44 H 1.07997 * 125.98898 * 179.97438 * 26 25 24 45 45 H 1.08004 * 125.65039 * 180.30023 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0430 -0.7247 -1.2476 5 6 3.5721 -0.7733 -1.2107 6 7 4.0116 -1.4766 0.0013 7 6 5.4686 -1.6641 0.0019 8 6 5.8618 -2.6081 -1.1362 9 1 5.4738 -2.2222 -2.0788 10 6 5.2971 -3.9437 -0.8831 11 7 4.8613 -4.9745 -0.6877 12 6 7.3867 -2.7055 -1.2140 13 6 7.7766 -3.5362 -2.4095 14 1 7.0131 -3.9533 -3.0494 15 6 9.1080 -3.7638 -2.6863 16 7 10.0377 -3.2554 -1.9073 17 14 9.5912 -4.7940 -4.1676 18 1 11.0713 -4.8874 -4.2440 19 1 9.0151 -6.1560 -4.0325 20 1 9.0714 -4.1571 -5.4044 21 6 3.5709 -0.7732 1.2126 22 6 2.0418 -0.7245 1.2480 23 1 1.7153 -0.1892 2.1397 24 7 1.5094 -2.0890 1.2743 25 6 1.8471 -3.1091 0.4263 26 6 1.1271 -4.1831 0.8027 27 7 0.3701 -3.8285 1.8514 28 6 0.5979 -2.5770 2.1430 29 1 -0.3633 0.5117 0.8912 30 1 -0.3634 0.5159 -0.8888 31 1 -0.3633 -1.0277 -0.0023 32 1 1.6468 -1.7400 -1.2673 33 1 1.7174 -0.1890 -2.1393 34 1 3.9678 0.2422 -1.2049 35 1 3.9400 -1.3013 -2.0905 36 1 5.7791 -2.0940 0.9542 37 1 5.9589 -0.7009 -0.1391 38 1 7.7678 -3.1736 -0.3064 39 1 7.8100 -1.7059 -1.3126 40 1 9.7868 -2.7201 -1.1382 41 1 3.9380 -1.3009 2.0929 42 1 3.9666 0.2424 1.2071 43 1 2.5554 -3.0619 -0.3876 44 1 1.1540 -5.1588 0.3404 45 1 0.1329 -2.0227 2.9450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129471656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:32 Heat of formation + Delta-G solvation = 86.092075 kcal Electronic energy + Delta-G solvation = -25523.797608 eV Core-core repulsion = 22156.160153 eV Total energy + Delta-G solvation = -3367.637455 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.18062 -39.44036 -36.94231 -34.99202 -33.81364 -32.89051 -31.67303 -30.26569 -29.00040 -28.39653 -25.89284 -23.85508 -23.45009 -22.14065 -21.86293 -21.35789 -20.68662 -20.06017 -17.24490 -16.79829 -16.60731 -16.16447 -15.63063 -14.93432 -14.83999 -14.26030 -14.08772 -13.90344 -13.79052 -13.47649 -13.41709 -13.36984 -13.14416 -12.79040 -12.55397 -12.34115 -12.16565 -12.09841 -11.94937 -11.62327 -11.40625 -11.19453 -10.97453 -10.91640 -10.88035 -10.64307 -10.29385 -10.15530 -9.93944 -9.77564 -9.41163 -8.72054 -8.47491 -8.43074 -8.19621 -6.47462 -4.19100 2.31139 2.85793 3.39920 3.40980 3.43390 3.56978 3.60693 3.67870 3.74439 4.14384 4.29048 4.45408 4.47428 4.65960 4.75870 4.80666 4.90799 5.01309 5.07808 5.11621 5.21265 5.25385 5.31159 5.34403 5.39909 5.50070 5.51810 5.57009 5.70515 5.73697 5.81737 5.86757 5.88106 6.02708 6.11361 6.13838 6.27149 6.50976 6.83400 6.88908 7.01014 7.02129 7.17772 7.40173 7.97812 8.28905 8.30454 8.48307 8.74585 9.52110 10.93214 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.003791 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.627548 B = 7383.593874 C = 7890.871357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.044 3.956 6 N -0.539 5.539 7 C 0.063 3.937 8 C 0.019 3.981 9 H 0.101 0.899 10 C 0.246 3.754 11 N -0.464 5.464 12 C 0.018 3.982 13 C -0.606 4.606 14 H 0.051 0.949 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 1.065 2.935 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.286 1.286 21 C 0.046 3.954 22 C 0.143 3.857 23 H 0.102 0.898 24 N -0.442 5.442 25 C -0.007 4.007 26 C -0.055 4.055 27 N -0.496 5.496 28 C 0.157 3.843 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.027 0.973 40 H 0.269 0.731 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.188 0.812 44 H 0.161 0.839 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.579 12.785 5.057 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.163 4.163 5 C -0.084 4.084 6 N -0.264 5.264 7 C -0.065 4.065 8 C -0.003 4.003 9 H 0.119 0.881 10 C -0.071 4.071 11 N -0.140 5.140 12 C -0.020 4.020 13 C -0.644 4.644 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.544 5.544 17 Si 0.893 3.107 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.213 1.213 21 C -0.082 4.082 22 C 0.039 3.961 23 H 0.120 0.880 24 N -0.126 5.126 25 C -0.141 4.141 26 C -0.202 4.202 27 N -0.215 5.215 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.205 0.795 44 H 0.178 0.822 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.651 9.781 4.939 19.933 hybrid contribution -0.117 2.337 0.395 2.373 sum -16.767 12.118 5.334 21.364 Atomic orbital electron populations 1.21802 0.94285 1.02525 1.01794 1.21527 0.96604 0.99395 0.94517 0.89640 1.21902 0.95066 1.02322 0.97010 1.22287 0.95213 0.97212 0.93681 1.62028 1.13741 1.49006 1.01623 1.22248 0.85593 0.98798 0.99905 1.19055 0.99142 0.83953 0.98182 0.88117 1.28744 0.91485 0.94463 0.92388 1.81034 1.11474 1.12006 1.09502 1.19278 0.86340 0.97996 0.98398 1.21942 0.94776 1.35643 1.12045 0.93080 1.25783 0.92763 0.97553 1.02194 1.70813 1.35629 1.32167 1.15743 0.83588 0.76310 0.75972 0.74848 1.20676 1.21372 1.21262 1.22364 0.93157 0.98202 0.94515 1.21545 0.93918 0.80860 0.99756 0.87986 1.45383 1.32309 1.09886 1.24995 1.23171 1.03754 0.87450 0.99696 1.22265 1.00013 0.99543 0.98349 1.70204 1.24700 1.11001 1.15559 1.24772 0.96596 0.92266 0.98780 0.92682 0.92249 0.92180 0.89940 0.90931 0.94108 0.89362 0.90175 0.92672 0.96535 0.95522 0.92093 0.89827 0.92623 0.79528 0.82185 0.78953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.02 37.16 0.34 -0.73 16 2 C -0.10 -0.74 2.61 -90.50 -0.24 -0.98 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -1.10 4.90 -26.65 -0.13 -1.23 16 5 C 0.04 0.43 5.05 -3.83 -0.02 0.41 16 6 N -0.54 -6.00 1.93 -234.67 -0.45 -6.45 16 7 C 0.06 0.83 4.32 -3.82 -0.02 0.81 16 8 C 0.02 0.32 2.14 -93.41 -0.20 0.12 16 9 H 0.10 1.63 6.22 -51.93 -0.32 1.31 16 10 C 0.25 4.90 13.67 -20.76 -0.28 4.61 16 11 N -0.46 -10.08 18.54 42.15 0.78 -9.30 16 12 C 0.02 0.41 3.73 -27.88 -0.10 0.30 16 13 C -0.61 -15.88 8.60 -34.44 -0.30 -16.18 16 14 H 0.05 1.35 7.59 -52.49 -0.40 0.95 16 15 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 16 N -0.91 -26.28 13.65 55.43 0.76 -25.52 16 17 Si 1.06 24.60 29.90 -169.99 -5.08 19.52 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.05 0.42 5.01 -3.84 -0.02 0.40 16 22 C 0.14 1.16 2.90 -67.86 -0.20 0.97 16 23 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 24 N -0.44 -4.92 1.80 -111.38 -0.20 -5.12 16 25 C -0.01 -0.10 8.15 -16.56 -0.13 -0.24 16 26 C -0.06 -0.86 11.87 -17.82 -0.21 -1.07 16 27 N -0.50 -7.68 11.25 -14.67 -0.17 -7.84 16 28 C 0.16 1.89 12.28 -90.37 -1.11 0.78 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.57 7.33 -51.93 -0.38 0.19 16 32 H 0.08 0.90 5.13 -51.93 -0.27 0.63 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.96 6.12 -51.93 -0.32 0.64 16 36 H 0.08 1.10 7.99 -51.93 -0.41 0.69 16 37 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.02 0.39 8.01 -51.93 -0.42 -0.02 16 39 H 0.03 0.59 8.01 -51.93 -0.42 0.17 16 40 H 0.27 7.60 7.22 -40.82 -0.29 7.31 16 41 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.19 2.74 5.20 -52.49 -0.27 2.47 16 44 H 0.16 2.46 8.06 -52.49 -0.42 2.04 16 45 H 0.19 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -31.86 356.12 -8.65 -40.51 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.94 Total: 0.37 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.72 Total: -11.54 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.72 Total: -54.23 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.86 -8.65 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129471656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.603 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds