Wall clock time and date at job start Tue Mar 31 2020 08:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.52408 * 2 1 4 4 C 1.53126 * 109.57185 * 239.84857 * 2 1 3 5 5 C 1.53033 * 109.27588 * 182.40489 * 4 2 1 6 6 N 1.46854 * 109.52456 * 59.18109 * 5 4 2 7 7 C 1.46899 * 111.00051 * 174.15791 * 6 5 4 8 8 C 1.53004 * 109.46981 * 294.20937 * 7 6 5 9 9 H 1.08998 * 109.47091 * 55.00584 * 8 7 6 10 10 C 1.47199 * 109.46990 * 294.99878 * 8 7 6 11 11 N 6.02628 * 123.55931 * 187.87134 * 2 1 3 12 12 C 1.52998 * 109.46801 * 175.00374 * 8 7 6 13 13 C 1.50701 * 109.46980 * 185.00015 * 12 8 7 14 14 H 1.07996 * 120.00075 * 359.97438 * 13 12 8 15 15 C 1.37884 * 120.00037 * 179.97438 * 13 12 8 16 16 N 1.31510 * 119.99714 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99810 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46674 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47322 * 299.99614 * 17 15 13 20 20 H 1.48502 * 109.47285 * 60.00061 * 17 15 13 21 21 C 1.46847 * 111.19345 * 298.25725 * 6 5 4 22 22 C 1.53028 * 109.52539 * 61.74209 * 21 6 5 23 23 H 1.09001 * 109.50662 * 180.84179 * 22 21 6 24 24 N 1.46501 * 109.50834 * 60.75808 * 22 21 6 25 25 C 1.36879 * 126.39656 * 309.51174 * 24 22 21 26 26 C 1.34668 * 106.81764 * 179.97438 * 25 24 22 27 27 N 1.34123 * 108.02234 * 0.02562 * 26 25 24 28 28 C 1.30506 * 109.25386 * 359.72139 * 27 26 25 29 29 H 1.09004 * 109.47016 * 299.86334 * 1 2 3 30 30 H 1.09000 * 109.47606 * 59.86867 * 1 2 3 31 31 H 1.09000 * 109.47029 * 179.87186 * 1 2 3 32 32 H 1.09001 * 109.50315 * 302.34974 * 4 2 1 33 33 H 1.09002 * 109.50430 * 62.46740 * 4 2 1 34 34 H 1.08997 * 109.46685 * 299.16439 * 5 4 2 35 35 H 1.09004 * 109.46213 * 179.19258 * 5 4 2 36 36 H 1.09000 * 109.47046 * 174.21140 * 7 6 5 37 37 H 1.09000 * 109.46910 * 54.20654 * 7 6 5 38 38 H 1.09003 * 109.47658 * 64.99696 * 12 8 7 39 39 H 1.09004 * 109.46904 * 304.99814 * 12 8 7 40 40 H 0.97007 * 120.00493 * 359.97438 * 16 15 13 41 41 H 1.09001 * 109.45908 * 181.75814 * 21 6 5 42 42 H 1.08999 * 109.46476 * 301.72066 * 21 6 5 43 43 H 1.07999 * 126.59230 * 0.02562 * 25 24 22 44 44 H 1.07997 * 125.98898 * 179.97438 * 26 25 24 45 45 H 1.08004 * 125.65039 * 180.30023 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0430 -0.7247 -1.2476 5 6 3.5721 -0.7733 -1.2107 6 7 4.0116 -1.4766 0.0013 7 6 5.4686 -1.6641 0.0019 8 6 5.8618 -2.6081 -1.1362 9 1 5.4738 -2.2222 -2.0788 10 6 5.2971 -3.9437 -0.8831 11 7 4.8613 -4.9745 -0.6877 12 6 7.3867 -2.7055 -1.2140 13 6 7.7766 -3.5362 -2.4095 14 1 7.0131 -3.9533 -3.0494 15 6 9.1080 -3.7638 -2.6863 16 7 10.0377 -3.2554 -1.9073 17 14 9.5912 -4.7940 -4.1676 18 1 11.0713 -4.8874 -4.2440 19 1 9.0151 -6.1560 -4.0325 20 1 9.0714 -4.1571 -5.4044 21 6 3.5709 -0.7732 1.2126 22 6 2.0418 -0.7245 1.2480 23 1 1.7153 -0.1892 2.1397 24 7 1.5094 -2.0890 1.2743 25 6 1.8471 -3.1091 0.4263 26 6 1.1271 -4.1831 0.8027 27 7 0.3701 -3.8285 1.8514 28 6 0.5979 -2.5770 2.1430 29 1 -0.3633 0.5117 0.8912 30 1 -0.3634 0.5159 -0.8888 31 1 -0.3633 -1.0277 -0.0023 32 1 1.6468 -1.7400 -1.2673 33 1 1.7174 -0.1890 -2.1393 34 1 3.9678 0.2422 -1.2049 35 1 3.9400 -1.3013 -2.0905 36 1 5.7791 -2.0940 0.9542 37 1 5.9589 -0.7009 -0.1391 38 1 7.7678 -3.1736 -0.3064 39 1 7.8100 -1.7059 -1.3126 40 1 9.7868 -2.7201 -1.1382 41 1 3.9380 -1.3009 2.0929 42 1 3.9666 0.2424 1.2071 43 1 2.5554 -3.0619 -0.3876 44 1 1.1540 -5.1588 0.3404 45 1 0.1329 -2.0227 2.9450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129471656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:31 Heat of formation + Delta-G solvation = 70.171096 kcal Electronic energy + Delta-G solvation = -25524.487994 eV Core-core repulsion = 22156.160153 eV Total energy + Delta-G solvation = -3368.327841 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.11315 -40.32885 -38.29654 -36.23505 -35.57839 -33.69700 -33.22443 -31.10154 -29.99178 -29.45875 -27.34849 -24.80978 -24.63529 -23.77129 -22.71780 -22.24456 -21.71117 -20.87342 -19.08724 -18.20868 -17.53147 -17.00698 -16.57154 -16.04099 -15.75881 -15.62893 -15.23978 -15.00279 -14.93643 -14.88715 -14.47001 -14.35843 -14.25640 -13.95727 -13.64536 -13.50917 -13.41466 -13.26381 -13.14834 -12.75366 -12.73255 -12.51817 -12.40557 -12.05373 -11.96047 -11.77877 -11.66849 -11.54473 -11.23299 -10.82435 -10.66440 -10.52732 -10.33438 -9.33457 -9.18572 -8.63460 -6.34585 1.33638 1.53584 1.59589 1.78433 2.01562 2.03693 2.09125 2.32515 2.55559 2.80826 3.18287 3.27971 3.51106 3.63734 3.83468 3.90560 3.94815 4.15716 4.20779 4.22739 4.30237 4.41060 4.47348 4.55936 4.60904 4.63161 4.68870 4.76368 4.78078 4.84929 4.85737 4.96573 5.02174 5.10398 5.15410 5.19830 5.27388 5.38349 5.42378 5.49999 5.89119 5.92072 6.02122 6.09254 6.21438 6.52771 6.63020 6.86835 7.26633 7.42729 8.78723 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.003791 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.627548 B = 7383.593874 C = 7890.871357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.113 0.887 4 C -0.123 4.123 5 C 0.045 3.955 6 N -0.554 5.554 7 C 0.076 3.924 8 C 0.028 3.972 9 H 0.116 0.884 10 C 0.257 3.743 11 N -0.502 5.502 12 C 0.022 3.978 13 C -0.614 4.614 14 H 0.045 0.955 15 C -0.028 4.028 16 N -0.936 5.936 17 Si 1.103 2.897 18 H -0.283 1.283 19 H -0.285 1.285 20 H -0.263 1.263 21 C 0.046 3.954 22 C 0.139 3.861 23 H 0.138 0.862 24 N -0.434 5.434 25 C -0.002 4.002 26 C -0.090 4.090 27 N -0.537 5.537 28 C 0.171 3.829 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.076 0.924 38 H -0.006 1.006 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.179 0.821 44 H 0.145 0.855 45 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.578 15.815 5.405 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.131 0.869 4 C -0.161 4.161 5 C -0.082 4.082 6 N -0.279 5.279 7 C -0.052 4.052 8 C 0.006 3.994 9 H 0.133 0.867 10 C -0.060 4.060 11 N -0.179 5.179 12 C -0.016 4.016 13 C -0.652 4.652 14 H 0.063 0.937 15 C -0.227 4.227 16 N -0.573 5.573 17 Si 0.926 3.074 18 H -0.209 1.209 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.082 4.082 22 C 0.037 3.963 23 H 0.156 0.844 24 N -0.116 5.116 25 C -0.137 4.137 26 C -0.236 4.236 27 N -0.256 5.256 28 C -0.112 4.112 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.012 0.988 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.196 0.804 44 H 0.162 0.838 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -17.666 12.840 5.283 22.469 hybrid contribution 0.149 1.428 0.300 1.466 sum -17.517 14.268 5.583 23.272 Atomic orbital electron populations 1.21750 0.94166 1.00999 1.02985 1.21533 0.96529 1.00262 0.92939 0.86894 1.21857 0.94287 1.01252 0.98659 1.22290 0.95821 0.97735 0.92379 1.61915 1.12112 1.50710 1.03194 1.22002 0.87448 0.98349 0.97421 1.19051 0.95742 0.83624 1.00943 0.86655 1.29307 0.90701 0.94744 0.91238 1.81038 1.12643 1.13207 1.11003 1.19137 0.89637 0.97152 0.95703 1.22358 0.94535 1.35349 1.12939 0.93714 1.26989 0.93454 0.98235 1.04016 1.70914 1.36176 1.33763 1.16471 0.83094 0.76002 0.75006 0.73334 1.20864 1.21119 1.18816 1.22433 0.93704 0.99241 0.92808 1.21939 0.93262 0.79265 1.01875 0.84427 1.45512 1.31667 1.10606 1.23791 1.22944 1.03142 0.87890 0.99741 1.22245 1.01806 0.99892 0.99662 1.70138 1.26001 1.13260 1.16219 1.25478 0.95562 0.91441 0.98700 0.90892 0.91742 0.94975 0.92635 0.89792 0.92118 0.90994 0.90981 0.90595 0.98752 0.94947 0.92883 0.90871 0.89759 0.80413 0.83766 0.75069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.02 71.98 0.65 -0.94 16 2 C -0.09 -0.99 2.61 -10.71 -0.03 -1.02 16 3 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 4 C -0.12 -1.88 4.90 30.65 0.15 -1.72 16 5 C 0.04 0.76 5.05 86.32 0.44 1.20 16 6 N -0.55 -11.14 1.93 -896.36 -1.73 -12.88 16 7 C 0.08 1.88 4.32 86.30 0.37 2.25 16 8 C 0.03 0.95 2.14 -12.60 -0.03 0.93 16 9 H 0.12 3.61 6.22 -2.39 -0.01 3.59 16 10 C 0.26 10.32 13.67 89.44 1.22 11.54 16 11 N -0.50 -22.41 18.54 20.01 0.37 -22.04 16 12 C 0.02 0.99 3.73 29.85 0.11 1.10 16 13 C -0.61 -32.24 8.60 25.60 0.22 -32.02 16 14 H 0.04 2.36 7.59 -2.91 -0.02 2.34 16 15 C -0.03 -1.54 5.46 84.66 0.46 -1.07 16 16 N -0.94 -54.66 13.65 21.45 0.29 -54.37 16 17 Si 1.10 49.38 29.90 68.60 2.05 51.43 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 C 0.05 0.67 5.01 86.32 0.43 1.10 16 22 C 0.14 1.71 2.90 45.04 0.13 1.84 16 23 H 0.14 0.83 8.09 -2.39 -0.02 0.81 16 24 N -0.43 -8.84 1.80 -506.29 -0.91 -9.76 16 25 C 0.00 -0.06 8.15 83.09 0.68 0.62 16 26 C -0.09 -2.96 11.87 83.52 0.99 -1.97 16 27 N -0.54 -16.73 11.25 -200.31 -2.25 -18.99 16 28 C 0.17 3.77 12.28 180.26 2.21 5.98 16 29 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.03 0.55 7.33 -2.39 -0.02 0.53 16 32 H 0.06 1.18 5.13 -2.39 -0.01 1.16 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.45 6.12 -2.38 -0.01 1.44 16 36 H 0.07 1.90 7.99 -2.39 -0.02 1.88 16 37 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 38 H -0.01 -0.29 8.01 -2.39 -0.02 -0.31 16 39 H 0.03 1.40 8.01 -2.38 -0.02 1.38 16 40 H 0.26 15.05 7.22 -92.70 -0.67 14.38 16 41 H 0.07 1.25 8.02 -2.39 -0.02 1.23 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.18 5.34 5.20 -2.91 -0.02 5.33 16 44 H 0.14 4.92 8.06 -2.91 -0.02 4.90 16 45 H 0.23 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -71.83 356.12 6.91 -64.92 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.08 Total: 13.86 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 8.02 Total: -12.18 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -4.23 Total: -118.02 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.05 Total: 51.43 kcal Total: -71.83 6.91 -64.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129471656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.090 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds