Wall clock time and date at job start Tue Mar 31 2020 07:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 119.99986 * 2 1 4 4 O 1.21550 * 120.00237 * 0.02562 * 3 2 1 5 5 C 1.47849 * 119.99813 * 180.02562 * 3 2 1 6 6 C 1.39575 * 120.14545 * 180.02562 * 5 3 2 7 7 C 1.37959 * 119.85267 * 180.02562 * 6 5 3 8 8 C 1.38353 * 120.14725 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.85397 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47021 * 90.00004 * 9 8 7 11 11 C 1.36933 * 120.00069 * 269.99400 * 10 9 8 12 12 H 1.07997 * 119.99601 * 141.60251 * 11 10 9 13 13 C 1.38809 * 120.00298 * 321.61529 * 11 10 9 14 14 N 1.31625 * 119.99493 * 339.49399 * 13 11 10 15 15 Si 1.86797 * 120.00135 * 159.49762 * 13 11 10 16 16 H 1.48491 * 109.47307 * 89.99758 * 15 13 11 17 17 H 1.48509 * 109.46884 * 210.00001 * 15 13 11 18 18 H 1.48501 * 109.47244 * 329.99298 * 15 13 11 19 19 C 1.46500 * 119.99651 * 90.00194 * 10 9 8 20 20 C 1.54967 * 110.92374 * 130.40583 * 19 10 9 21 21 C 1.54271 * 104.16238 * 156.28920 * 20 19 10 22 22 C 1.53877 * 106.63896 * 336.45014 * 21 20 19 23 23 C 1.54269 * 106.59968 * 359.97032 * 22 21 20 24 24 C 1.38363 * 120.29285 * 0.23091 * 8 7 6 25 25 C 1.37966 * 120.14112 * 359.49287 * 24 8 7 26 26 H 1.08997 * 109.46882 * 59.99660 * 1 2 3 27 27 H 1.08997 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46989 * 299.99745 * 1 2 3 29 29 H 0.96997 * 119.99528 * 180.02562 * 2 1 3 30 30 H 1.08001 * 120.07208 * 359.97438 * 6 5 3 31 31 H 1.08000 * 119.92428 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.47116 * 329.99774 * 9 8 7 33 33 H 1.09003 * 109.46909 * 209.99509 * 9 8 7 34 34 H 0.96999 * 119.99285 * 180.02562 * 14 13 11 35 35 H 1.09000 * 110.67794 * 7.09529 * 19 10 9 36 36 H 1.09008 * 110.47628 * 37.63950 * 20 19 10 37 37 H 1.08997 * 110.53199 * 274.97155 * 20 19 10 38 38 H 1.08993 * 110.03480 * 217.13802 * 21 20 19 39 39 H 1.08995 * 110.02664 * 95.75457 * 21 20 19 40 40 H 1.08992 * 110.03325 * 119.25930 * 22 21 20 41 41 H 1.09002 * 110.02473 * 240.64281 * 22 21 20 42 42 H 1.08998 * 110.48512 * 142.28878 * 23 22 21 43 43 H 1.08998 * 110.48581 * 264.80654 * 23 22 21 44 44 H 1.07995 * 119.93082 * 179.74251 * 24 8 7 45 45 H 1.07993 * 120.07079 * 180.24572 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6174 1.1671 -0.0006 6 6 4.3184 2.3741 0.0000 7 6 5.6979 2.3670 -0.0011 8 6 6.3866 1.1670 -0.0033 9 6 7.8936 1.1670 -0.0050 10 7 8.3835 1.1655 1.3757 11 6 8.6126 2.3506 2.0223 12 1 8.3677 2.4506 3.0693 13 6 9.1594 3.4235 1.3319 14 7 9.8219 3.2175 0.2133 15 14 8.9550 5.1597 1.9902 16 1 10.0885 5.4833 2.8932 17 1 8.9350 6.1195 0.8571 18 1 7.6788 5.2565 2.7433 19 6 8.6285 -0.1041 2.0645 20 6 10.0315 -0.1150 2.7225 21 6 9.9095 -1.1562 3.8543 22 6 8.4147 -1.2500 4.2075 23 6 7.6796 -0.2618 3.2786 24 6 5.6979 -0.0330 -0.0091 25 6 4.3182 -0.0399 -0.0024 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.9500 -0.8401 -0.0004 30 1 3.7820 3.3115 0.0004 31 1 6.2415 3.3002 -0.0011 32 1 8.2563 2.0575 -0.5183 33 1 8.2563 0.2775 -0.5202 34 1 10.2043 3.9672 -0.2689 35 1 8.5185 -0.9426 1.3768 36 1 10.2685 0.8672 3.1316 37 1 10.7893 -0.4221 2.0017 38 1 10.4791 -0.8302 4.7245 39 1 10.2736 -2.1247 3.5114 40 1 8.0533 -2.2637 4.0354 41 1 8.2592 -0.9702 5.2495 42 1 6.7218 -0.6756 2.9629 43 1 7.5343 0.6957 3.7786 44 1 6.2413 -0.9662 -0.0150 45 1 3.7818 -0.9772 -0.0030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156727122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:50 Heat of formation + Delta-G solvation = -19.375829 kcal Electronic energy + Delta-G solvation = -24934.828829 eV Core-core repulsion = 21530.325191 eV Total energy + Delta-G solvation = -3404.503638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15266 -39.72254 -38.82673 -36.16277 -35.71781 -33.45969 -32.14807 -31.78758 -29.30346 -28.83118 -27.94080 -26.97897 -24.64765 -23.40747 -22.78092 -21.25928 -21.07211 -20.83798 -19.17653 -18.23406 -17.34054 -17.00782 -16.42157 -16.24808 -16.16880 -15.94279 -15.80007 -15.46042 -15.17085 -14.53775 -14.32070 -14.21108 -14.04397 -13.98945 -13.41198 -13.27458 -13.08410 -13.04845 -12.84345 -12.71189 -12.31017 -12.15206 -11.99027 -11.89684 -11.78003 -11.72925 -11.59364 -11.15096 -11.09208 -11.04704 -10.46795 -10.23314 -9.82977 -9.55550 -8.47447 -7.80584 -5.40328 -0.03013 0.54756 1.39968 1.45941 1.52622 1.88337 2.24430 2.49817 2.97078 3.27745 3.74056 3.78864 3.94570 4.05010 4.06384 4.08543 4.30132 4.37660 4.46678 4.53011 4.63038 4.63811 4.68751 4.79669 4.86532 4.93570 4.95759 4.97224 4.99877 5.05704 5.17486 5.24510 5.27105 5.34210 5.35976 5.41326 5.52005 5.59716 5.61617 5.68001 5.72732 5.79928 5.95401 6.07835 6.51603 6.53071 7.18927 7.21208 7.90800 8.41775 9.14290 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.012726 B = 0.004814 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.680294 B = 5814.972670 C = 7231.350909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.717 5.717 3 C 0.559 3.441 4 O -0.588 6.588 5 C -0.167 4.167 6 C -0.074 4.074 7 C -0.127 4.127 8 C -0.052 4.052 9 C 0.173 3.827 10 N -0.576 5.576 11 C -0.239 4.239 12 H 0.046 0.954 13 C -0.023 4.023 14 N -0.909 5.909 15 Si 0.932 3.068 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.166 3.834 20 C -0.127 4.127 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.069 4.069 26 H 0.051 0.949 27 H 0.118 0.882 28 H 0.049 0.951 29 H 0.418 0.582 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.250 0.750 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.144 0.856 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 -14.449 0.597 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.369 5.369 3 C 0.348 3.652 4 O -0.470 6.470 5 C -0.171 4.171 6 C -0.093 4.093 7 C -0.146 4.146 8 C -0.055 4.055 9 C 0.047 3.953 10 N -0.294 5.294 11 C -0.370 4.370 12 H 0.064 0.936 13 C -0.221 4.221 14 N -0.553 5.553 15 Si 0.761 3.239 16 H -0.212 1.212 17 H -0.218 1.218 18 H -0.205 1.205 19 C 0.060 3.940 20 C -0.166 4.166 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.087 4.087 26 H 0.070 0.930 27 H 0.136 0.864 28 H 0.068 0.932 29 H 0.256 0.744 30 H 0.134 0.866 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.162 0.838 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.395 -13.629 0.489 17.772 hybrid contribution 0.500 1.605 0.241 1.698 sum -10.895 -12.025 0.731 16.243 Atomic orbital electron populations 1.21732 0.78096 1.04612 1.01514 1.45616 1.08623 1.08131 1.74555 1.18477 0.87473 0.84012 0.75216 1.90718 1.70831 1.33117 1.52337 1.19789 0.92193 0.94903 1.10191 1.21160 0.93631 0.97909 0.96614 1.20930 0.93489 0.98387 1.01786 1.21315 0.98853 0.93112 0.92252 1.19942 0.86487 1.01588 0.87236 1.43849 1.72920 1.01283 1.11373 1.18833 1.33602 0.89833 0.94746 0.93635 1.25557 0.97040 1.01073 0.98401 1.70067 1.35684 1.30426 1.19080 0.85840 0.77941 0.82555 0.77550 1.21168 1.21769 1.20490 1.21612 0.92556 0.87298 0.92551 1.22572 0.98191 0.98453 0.97376 1.22038 0.96773 0.98806 0.97648 1.22021 0.94797 0.99465 0.98770 1.22652 0.98611 0.98143 0.97472 1.21184 0.94103 0.97710 1.01271 1.21476 0.94041 0.96966 0.96249 0.93027 0.86402 0.93225 0.74419 0.86649 0.88321 0.91254 0.93426 0.94018 0.91239 0.93917 0.93865 0.92389 0.90702 0.90258 0.92215 0.92237 0.94507 0.83780 0.81802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.70 127.77 1.37 2.61 16 2 N -0.72 -13.58 5.66 -487.46 -2.76 -16.34 16 3 C 0.56 16.57 7.77 86.79 0.67 17.24 16 4 O -0.59 -22.34 16.35 -3.87 -0.06 -22.40 16 5 C -0.17 -5.14 5.87 -20.09 -0.12 -5.26 16 6 C -0.07 -2.72 9.60 22.53 0.22 -2.51 16 7 C -0.13 -5.12 9.68 22.23 0.22 -4.90 16 8 C -0.05 -1.97 5.47 -19.81 -0.11 -2.08 16 9 C 0.17 7.53 5.41 85.63 0.46 8.00 16 10 N -0.58 -26.25 2.46 -675.02 -1.66 -27.92 16 11 C -0.24 -12.41 7.69 84.03 0.65 -11.76 16 12 H 0.05 2.46 6.95 -2.91 -0.02 2.44 16 13 C -0.02 -1.23 4.97 84.86 0.42 -0.80 16 14 N -0.91 -50.79 11.47 21.65 0.25 -50.54 16 15 Si 0.93 44.40 29.60 68.60 2.03 46.43 16 16 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 C 0.17 6.29 3.43 46.31 0.16 6.45 16 20 C -0.13 -4.77 6.33 31.70 0.20 -4.57 16 21 C -0.11 -3.24 6.80 31.32 0.21 -3.03 16 22 C -0.11 -3.01 6.80 31.32 0.21 -2.79 16 23 C -0.13 -4.36 6.41 31.67 0.20 -4.16 16 24 C -0.12 -3.60 9.68 22.24 0.22 -3.39 16 25 C -0.07 -1.69 9.54 22.53 0.21 -1.47 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.12 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.42 4.91 6.86 -92.71 -0.64 4.28 16 30 H 0.12 4.35 7.65 -2.91 -0.02 4.33 16 31 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.07 3.55 5.48 -2.39 -0.01 3.54 16 33 H 0.05 1.91 7.84 -2.39 -0.02 1.89 16 34 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 35 H 0.07 2.38 7.84 -2.39 -0.02 2.36 16 36 H 0.04 1.91 6.99 -2.38 -0.02 1.89 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.04 1.46 6.84 -2.39 -0.02 1.45 16 44 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 45 H 0.16 2.31 6.41 -2.91 -0.02 2.30 16 Total: -1.00 -67.40 363.58 3.34 -64.07 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.35 Total: 19.13 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.20 Total: -12.43 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -4.18 Total: -94.79 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.40 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.40 3.34 -64.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156727122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.690 kcal (2) G-P(sol) polarization free energy of solvation -67.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds