Wall clock time and date at job start Tue Mar 31 2020 08:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30242 * 126.15960 * 2 1 4 4 N 1.39819 * 110.09339 * 180.02562 * 3 2 1 5 5 C 1.46508 * 125.40113 * 180.02562 * 4 3 2 6 6 C 1.37052 * 109.20265 * 359.97438 * 4 3 2 7 7 N 1.32716 * 133.39112 * 180.02562 * 6 4 3 8 8 C 1.31449 * 121.73345 * 180.02562 * 7 6 4 9 9 C 1.39437 * 121.47796 * 359.97438 * 8 7 6 10 10 N 1.39999 * 120.32772 * 180.02562 * 9 8 7 11 11 C 1.46499 * 119.99731 * 359.97438 * 10 9 8 12 12 C 1.52995 * 109.47032 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47179 * 299.99468 * 12 11 10 14 14 C 1.52994 * 109.47475 * 59.99959 * 12 11 10 15 15 C 1.53001 * 109.47223 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.47474 * 179.97438 * 15 12 11 17 17 H 1.07998 * 119.99953 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00238 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00375 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00010 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46858 * 90.00205 * 20 18 16 22 22 H 1.48505 * 109.46827 * 210.00328 * 20 18 16 23 23 H 1.48496 * 109.46672 * 330.00270 * 20 18 16 24 24 C 1.38565 * 119.34938 * 0.02562 * 9 8 7 25 25 C 1.40031 * 118.00114 * 359.97438 * 24 9 8 26 26 H 1.09000 * 109.47361 * 89.97620 * 1 2 3 27 27 H 1.09004 * 109.47491 * 209.97853 * 1 2 3 28 28 H 1.09006 * 109.47114 * 329.97939 * 1 2 3 29 29 H 1.09004 * 109.46626 * 269.95595 * 5 4 3 30 30 H 1.09000 * 109.46998 * 29.95275 * 5 4 3 31 31 H 1.08999 * 109.47395 * 149.95638 * 5 4 3 32 32 H 1.08000 * 119.26021 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00251 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.47116 * 299.99910 * 11 10 9 35 35 H 1.09006 * 109.47059 * 59.99612 * 11 10 9 36 36 H 1.09002 * 109.47087 * 60.00218 * 13 12 11 37 37 H 1.08998 * 109.47329 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47588 * 300.00281 * 13 12 11 39 39 H 1.08995 * 109.47597 * 59.99752 * 14 12 11 40 40 H 1.09007 * 109.47269 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46741 * 299.99751 * 14 12 11 42 42 H 1.09003 * 109.47153 * 300.00042 * 15 12 11 43 43 H 1.09009 * 109.47326 * 59.99638 * 15 12 11 44 44 H 0.97001 * 120.00592 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.99991 * 179.73079 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2755 1.0515 0.0000 4 7 3.6191 0.6646 -0.0006 5 6 4.7651 1.5773 -0.0002 6 6 3.6941 -0.7039 -0.0004 7 7 4.7069 -1.5615 -0.0003 8 6 4.5121 -2.8614 -0.0006 9 6 3.2282 -3.4053 -0.0005 10 7 3.0486 -4.7937 -0.0003 11 6 4.2129 -5.6829 -0.0008 12 6 3.7427 -7.1388 -0.0011 13 6 2.9000 -7.4028 1.2483 14 6 2.8994 -7.4022 -1.2501 15 6 4.9587 -8.0674 -0.0022 16 6 4.4956 -9.5015 -0.0019 17 1 3.4396 -9.7280 -0.0005 18 6 5.4200 -10.5245 -0.0022 19 7 5.0159 -11.7760 -0.0024 20 14 7.2465 -10.1328 -0.0038 21 1 7.7316 -10.0286 1.3959 22 1 7.9841 -11.2149 -0.7041 23 1 7.4756 -8.8437 -0.7045 24 6 2.1318 -2.5580 -0.0006 25 6 2.3675 -1.1777 -0.0003 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 5.0495 1.8037 -1.0279 30 1 4.4948 2.4998 0.5136 31 1 5.6037 1.1074 0.5137 32 1 5.3657 -3.5231 -0.0010 33 1 2.1533 -5.1670 0.0001 34 1 4.8131 -5.4951 -0.8911 35 1 4.8140 -5.4949 0.8889 36 1 2.0337 -6.7413 1.2487 37 1 2.5654 -8.4402 1.2484 38 1 3.5008 -7.2152 2.1382 39 1 3.4997 -7.2141 -2.1402 40 1 2.5640 -8.4394 -1.2501 41 1 2.0331 -6.7406 -1.2497 42 1 5.5588 -7.8792 -0.8925 43 1 5.5599 -7.8799 0.8875 44 1 5.6662 -12.4957 -0.0030 45 1 1.1256 -2.9505 -0.0049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166490282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:21 Heat of formation + Delta-G solvation = 89.867222 kcal Electronic energy + Delta-G solvation = -24090.339331 eV Core-core repulsion = 20722.865578 eV Total energy + Delta-G solvation = -3367.473753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53053 -38.90021 -37.43139 -34.79158 -33.98632 -32.32444 -31.16694 -29.74096 -29.13950 -27.66180 -26.57805 -26.18044 -25.26712 -23.85658 -22.56660 -21.68704 -19.85468 -18.39935 -17.69063 -17.08753 -16.92786 -16.24221 -15.94708 -15.19331 -14.82373 -14.56162 -14.15064 -13.79020 -13.67091 -13.53650 -13.51013 -13.33613 -12.94026 -12.90861 -12.71707 -12.58435 -12.39538 -12.30731 -11.91883 -11.37301 -11.18707 -11.06486 -11.03079 -10.77227 -10.62200 -10.52771 -9.99535 -9.79796 -9.56691 -9.53834 -9.33958 -9.03437 -8.85429 -8.57127 -7.10981 -6.07398 -4.04989 0.69030 1.48957 2.10933 2.31662 3.27893 3.36389 3.38404 3.50354 3.79798 4.08099 4.29109 4.41826 4.43237 4.79223 4.93952 5.00476 5.07803 5.16979 5.24688 5.30313 5.31206 5.31989 5.43615 5.44731 5.56948 5.61853 5.68234 5.87285 5.99096 6.05380 6.09332 6.20567 6.28277 6.39513 6.52846 6.56839 6.76005 6.84449 6.98524 7.01482 7.14455 7.31572 7.31986 7.42891 7.72985 7.75665 7.96943 8.49546 8.96857 9.54951 11.05395 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.002831 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.554790 B = 9889.325037 C =10710.914151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.091 3.909 3 N -0.240 5.240 4 N -0.402 5.402 5 C 0.118 3.882 6 C 0.259 3.741 7 N -0.468 5.468 8 C 0.110 3.890 9 C 0.142 3.858 10 N -0.732 5.732 11 C 0.127 3.873 12 C -0.060 4.060 13 C -0.128 4.128 14 C -0.128 4.128 15 C -0.002 4.002 16 C -0.512 4.512 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C -0.099 4.099 25 C -0.168 4.168 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.401 0.599 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.032 0.968 42 H 0.018 0.982 43 H 0.013 0.987 44 H 0.263 0.737 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 22.847 0.062 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 N -0.055 5.055 4 N -0.195 5.195 5 C -0.023 4.023 6 C 0.021 3.979 7 N -0.181 5.181 8 C -0.062 4.062 9 C 0.034 3.966 10 N -0.363 5.363 11 C 0.003 3.997 12 C -0.060 4.060 13 C -0.185 4.185 14 C -0.185 4.185 15 C -0.040 4.040 16 C -0.549 4.549 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.135 4.135 25 C -0.179 4.179 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.182 0.818 33 H 0.238 0.762 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.036 0.964 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.924 24.329 0.060 24.822 hybrid contribution 0.137 -1.253 -0.005 1.261 sum -4.786 23.076 0.055 23.567 Atomic orbital electron populations 1.20218 0.85629 1.03764 1.03393 1.23373 0.96569 0.88520 1.00274 1.76518 0.86794 1.23222 1.19005 1.47768 1.03812 1.01541 1.66422 1.21684 0.84917 0.92959 1.02749 1.18747 0.90342 0.85932 1.02882 1.66521 1.33328 1.02546 1.15737 1.22368 0.95470 0.89342 0.99064 1.18577 0.94142 0.85609 0.98241 1.44828 1.09436 1.00645 1.81422 1.21668 0.87409 0.90125 1.00494 1.20627 0.98144 0.91449 0.95806 1.21760 0.97900 1.02161 0.96706 1.21756 0.97883 1.02160 0.96704 1.19601 0.92564 0.95415 0.96416 1.21074 0.95232 0.88171 1.50462 0.90421 1.25009 0.98715 0.95004 0.94740 1.69899 1.34345 0.98766 1.51249 0.86854 0.86079 0.78312 0.78470 1.20385 1.21517 1.19014 1.20249 0.98295 0.89897 1.05013 1.20068 0.93273 0.93956 1.10565 0.90032 0.89998 0.90405 0.91645 0.89908 0.89496 0.81849 0.76188 0.92464 0.92462 0.94899 0.91000 0.93477 0.93468 0.90999 0.94905 0.96404 0.96860 0.92768 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.48 36.01 0.38 -0.14 16 2 C 0.09 1.06 7.44 -80.22 -0.60 0.47 16 3 N -0.24 -3.12 12.40 34.82 0.43 -2.69 16 4 N -0.40 -5.29 4.05 -67.17 -0.27 -5.56 16 5 C 0.12 1.09 11.44 59.85 0.68 1.77 16 6 C 0.26 3.74 7.97 -155.96 -1.24 2.50 16 7 N -0.47 -6.80 10.38 -12.16 -0.13 -6.93 16 8 C 0.11 1.47 10.47 -17.27 -0.18 1.29 16 9 C 0.14 1.80 6.67 -83.56 -0.56 1.24 16 10 N -0.73 -9.06 5.15 -58.49 -0.30 -9.36 16 11 C 0.13 1.80 3.81 -4.04 -0.02 1.78 16 12 C -0.06 -1.02 0.54 -154.51 -0.08 -1.10 16 13 C -0.13 -2.11 8.05 37.16 0.30 -1.82 16 14 C -0.13 -2.11 8.05 37.15 0.30 -1.81 16 15 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 16 C -0.51 -13.30 8.20 -34.44 -0.28 -13.58 16 17 H 0.08 2.15 5.92 -52.49 -0.31 1.84 16 18 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 19 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 20 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 C -0.10 -1.18 10.09 -38.79 -0.39 -1.57 16 25 C -0.17 -2.22 6.34 -105.18 -0.67 -2.88 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.16 1.96 6.72 -52.49 -0.35 1.61 16 33 H 0.40 4.62 6.19 -40.82 -0.25 4.37 16 34 H 0.06 0.81 7.96 -51.93 -0.41 0.39 16 35 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 36 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 37 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 41 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 42 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 43 H 0.01 0.29 7.57 -51.92 -0.39 -0.11 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -31.29 360.25 -8.16 -39.45 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.88 Total: 1.73 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.54 Total: -12.25 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.51 Total: -50.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.29 -8.16 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166490282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.317 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds