Wall clock time and date at job start Tue Mar 31 2020 08:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39872 * 125.90150 * 2 1 4 4 C 1.35322 * 107.91776 * 179.97438 * 3 2 1 5 5 C 1.50691 * 126.12370 * 179.97438 * 4 3 2 6 6 C 1.53115 * 109.52362 * 95.12558 * 5 4 3 7 7 C 1.53181 * 109.21036 * 177.56306 * 6 5 4 8 8 N 1.46852 * 109.55094 * 300.85870 * 7 6 5 9 9 C 1.46896 * 110.99480 * 185.84085 * 8 7 6 10 10 C 1.52999 * 109.47577 * 52.11848 * 9 8 7 11 11 H 1.09002 * 109.46561 * 301.93518 * 10 9 8 12 12 C 1.47196 * 109.47081 * 61.93453 * 10 9 8 13 13 N 8.76110 * 157.09913 * 79.73848 * 2 1 3 14 14 C 1.52999 * 109.47408 * 181.93867 * 10 9 8 15 15 C 1.50691 * 109.47453 * 174.99738 * 14 10 9 16 16 H 1.08010 * 119.99885 * 0.02562 * 15 14 10 17 17 C 1.37877 * 120.00385 * 179.97438 * 15 14 10 18 18 N 1.31519 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47247 * 60.00469 * 19 17 15 21 21 H 1.48500 * 109.47402 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47369 * 300.00333 * 19 17 15 23 23 C 1.46843 * 111.19587 * 61.74363 * 8 7 6 24 24 C 1.53033 * 109.52558 * 298.25460 * 23 8 7 25 25 N 1.34949 * 107.74650 * 0.22078 * 4 3 2 26 26 H 0.96999 * 126.03421 * 179.76880 * 25 4 3 27 27 N 1.30837 * 125.89520 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46802 * 90.00361 * 1 2 3 29 29 H 1.08992 * 109.47156 * 210.00750 * 1 2 3 30 30 H 1.08997 * 109.46866 * 330.00863 * 1 2 3 31 31 H 1.07996 * 126.03951 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.52420 * 334.99575 * 5 4 3 33 33 H 1.09003 * 109.50543 * 297.55900 * 6 5 4 34 34 H 1.09000 * 109.50870 * 57.68333 * 6 5 4 35 35 H 1.09000 * 109.44785 * 180.83391 * 7 6 5 36 36 H 1.09002 * 109.43658 * 60.87730 * 7 6 5 37 37 H 1.08999 * 109.47280 * 172.12118 * 9 8 7 38 38 H 1.09004 * 109.47002 * 292.11730 * 9 8 7 39 39 H 1.09001 * 109.46794 * 295.00300 * 14 10 9 40 40 H 1.09005 * 109.47159 * 54.99611 * 14 10 9 41 41 H 0.97003 * 119.99668 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46058 * 178.23866 * 23 8 7 43 43 H 1.09002 * 109.46500 * 58.27507 * 23 8 7 44 44 H 1.09001 * 109.50435 * 299.23958 * 24 23 8 45 45 H 1.08999 * 109.53893 * 179.14159 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6144 0.7152 0.0006 5 6 4.8351 1.5986 0.0002 6 6 5.3249 1.7952 1.4376 7 6 6.6004 2.6434 1.4239 8 7 7.6304 1.9692 0.6233 9 6 8.9105 2.6854 0.7017 10 6 9.2801 2.9104 2.1692 11 1 8.4864 3.4723 2.6616 12 6 9.4482 1.6099 2.8378 13 7 9.5776 0.6073 3.3547 14 6 10.5889 3.6986 2.2505 15 6 10.8893 4.0265 3.6903 16 1 10.2143 3.7045 4.4697 17 6 12.0262 4.7367 4.0130 18 7 12.8483 5.1283 3.0641 19 14 12.3988 5.1425 5.7979 20 1 12.5296 3.8837 6.5749 21 1 13.6691 5.9076 5.8769 22 1 11.2938 5.9592 6.3610 23 6 7.2000 1.8118 -0.7718 24 6 5.9440 0.9390 -0.8242 25 7 3.6088 -0.6343 -0.0040 26 1 4.3908 -1.2081 -0.0079 27 7 2.2741 -1.0599 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8898 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.9925 2.1598 -0.0004 32 1 4.5845 2.5662 -0.4347 33 1 4.5548 2.3029 2.0183 34 1 5.5386 0.8246 1.8852 35 1 6.9608 2.7734 2.4443 36 1 6.3827 3.6188 0.9886 37 1 9.6879 2.0942 0.2178 38 1 8.8198 3.6479 0.1981 39 1 11.4002 3.0993 1.8374 40 1 10.4928 4.6224 1.6799 41 1 13.6480 5.6283 3.2911 42 1 7.9959 1.3376 -1.3461 43 1 6.9797 2.7911 -1.1967 44 1 6.1673 -0.0452 -0.4121 45 1 5.6155 0.8345 -1.8582 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273037244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:11 Heat of formation + Delta-G solvation = 79.027599 kcal Electronic energy + Delta-G solvation = -24004.968080 eV Core-core repulsion = 20637.024286 eV Total energy + Delta-G solvation = -3367.943794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56711 -39.26941 -36.59732 -34.63664 -33.51814 -32.68983 -31.61216 -30.89637 -29.67869 -28.05905 -26.84072 -24.81403 -23.39030 -22.46033 -21.61222 -20.73409 -20.42178 -19.43601 -17.67644 -16.74791 -16.54311 -15.67761 -15.18119 -14.95431 -14.71143 -14.58297 -14.54255 -13.86332 -13.74853 -13.67421 -13.31907 -13.00335 -12.92782 -12.83232 -12.57734 -12.29658 -12.21206 -11.99772 -11.74887 -11.37956 -11.36069 -11.16046 -11.04364 -10.98081 -10.74607 -10.65997 -10.57854 -10.53479 -10.10329 -9.58019 -9.43204 -9.26419 -8.77455 -8.48550 -8.25455 -6.12744 -4.16197 1.69181 2.56240 2.68356 3.28767 3.33314 3.36864 3.68514 3.77030 3.89890 4.20174 4.38214 4.44009 4.53368 4.64995 4.85529 4.92872 5.00684 5.10111 5.18669 5.25332 5.31827 5.34300 5.39720 5.41675 5.45650 5.49860 5.58998 5.65081 5.67138 5.71065 5.78852 5.82209 5.91213 5.99865 6.01258 6.16962 6.33782 6.44956 6.47816 7.09383 7.10434 7.12681 7.38137 7.48377 7.52195 7.81893 8.19269 8.53619 8.88078 9.49424 10.98032 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.028932 B = 0.002597 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.547394 B =10778.695543 C =11027.569347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.073 3.927 3 C -0.274 4.274 4 C 0.108 3.892 5 C -0.028 4.028 6 C -0.106 4.106 7 C 0.047 3.953 8 N -0.542 5.542 9 C 0.063 3.937 10 C 0.005 3.995 11 H 0.102 0.898 12 C 0.254 3.746 13 N -0.477 5.477 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.058 3.942 24 C -0.114 4.114 25 N -0.471 5.471 26 H 0.437 0.563 27 N -0.300 5.300 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.433 -4.093 -10.912 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 C -0.303 4.303 4 C -0.021 4.021 5 C -0.049 4.049 6 C -0.144 4.144 7 C -0.081 4.081 8 N -0.267 5.267 9 C -0.065 4.065 10 C -0.017 4.017 11 H 0.119 0.881 12 C -0.063 4.063 13 N -0.153 5.153 14 C -0.007 4.007 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.070 4.070 24 C -0.152 4.152 25 N -0.179 5.179 26 H 0.282 0.718 27 N -0.123 5.123 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.995 -7.245 -9.972 23.489 hybrid contribution 0.655 2.041 0.483 2.197 sum -19.340 -5.204 -9.490 22.162 Atomic orbital electron populations 1.20169 0.86839 1.03266 1.02861 1.22323 0.96972 0.90801 0.99255 1.21119 0.90912 0.99812 1.18500 1.21089 0.96758 0.84861 0.99418 1.20047 0.89719 0.97284 0.97831 1.21661 0.96741 1.01545 0.94480 1.22253 0.91135 0.95054 0.99647 1.62003 1.03297 1.51358 1.10060 1.22235 0.90539 0.97444 0.96272 1.19350 1.03599 0.86887 0.91871 0.88071 1.28796 0.91353 0.93801 0.92340 1.80962 1.10665 1.13233 1.10465 1.19164 0.88557 0.94710 0.98229 1.21086 1.07746 1.35531 0.92193 0.92601 1.24951 0.96012 0.95596 0.97376 1.69928 1.12892 1.37941 1.32205 0.86653 0.77699 0.78585 0.85145 1.20213 1.21168 1.20044 1.22005 0.96745 0.98562 0.89663 1.21660 0.94208 0.99690 0.99608 1.46283 1.07163 1.05060 1.59363 0.71836 1.77281 0.86597 1.22545 1.25926 0.90615 0.91024 0.90434 0.83692 0.88615 0.90837 0.91154 0.89391 0.94133 0.89977 0.92834 0.95533 0.94440 0.92712 0.90332 0.94360 0.91389 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.01 0.38 -0.13 16 2 C 0.07 0.77 7.22 -82.40 -0.59 0.17 16 3 C -0.27 -2.72 10.65 -40.01 -0.43 -3.15 16 4 C 0.11 1.06 5.92 -82.27 -0.49 0.58 16 5 C -0.03 -0.24 2.64 -91.66 -0.24 -0.49 16 6 C -0.11 -1.05 5.37 -26.58 -0.14 -1.19 16 7 C 0.05 0.52 5.04 -3.76 -0.02 0.50 16 8 N -0.54 -6.61 4.38 -234.58 -1.03 -7.64 16 9 C 0.06 0.88 4.52 -3.83 -0.02 0.87 16 10 C 0.00 0.08 1.75 -93.41 -0.16 -0.08 16 11 H 0.10 1.66 6.07 -51.93 -0.32 1.35 16 12 C 0.25 5.16 13.46 -20.78 -0.28 4.88 16 13 N -0.48 -10.60 18.53 42.13 0.78 -9.82 16 14 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 15 C -0.53 -13.79 8.60 -34.44 -0.30 -14.09 16 16 H 0.06 1.45 7.59 -52.48 -0.40 1.06 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.18 13.29 55.43 0.74 -24.45 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.06 0.56 5.46 -3.84 -0.02 0.54 16 24 C -0.11 -0.96 5.17 -26.65 -0.14 -1.10 16 25 N -0.47 -4.95 7.13 33.47 0.24 -4.71 16 26 H 0.44 3.85 8.11 -182.61 -1.48 2.37 16 27 N -0.30 -3.65 12.70 33.67 0.43 -3.23 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.11 5.71 -51.93 -0.30 0.81 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.61 7.35 -51.93 -0.38 0.23 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -31.46 368.18 -9.34 -40.80 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -8.35 Total: -2.08 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.67 Total: -10.48 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 1.16 Total: -49.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.46 -9.34 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273037244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.829 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds