Wall clock time and date at job start Tue Mar 31 2020 08:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39872 * 125.90150 * 2 1 4 4 C 1.35322 * 107.91776 * 179.97438 * 3 2 1 5 5 C 1.50691 * 126.12370 * 179.97438 * 4 3 2 6 6 C 1.53115 * 109.52362 * 95.12558 * 5 4 3 7 7 C 1.53181 * 109.21036 * 177.56306 * 6 5 4 8 8 N 1.46852 * 109.55094 * 300.85870 * 7 6 5 9 9 C 1.46896 * 110.99480 * 185.84085 * 8 7 6 10 10 C 1.52999 * 109.47577 * 52.11848 * 9 8 7 11 11 H 1.09002 * 109.46561 * 301.93518 * 10 9 8 12 12 C 1.47196 * 109.47081 * 61.93453 * 10 9 8 13 13 N 8.76110 * 157.09913 * 79.73848 * 2 1 3 14 14 C 1.52999 * 109.47408 * 181.93867 * 10 9 8 15 15 C 1.50691 * 109.47453 * 174.99738 * 14 10 9 16 16 H 1.08010 * 119.99885 * 0.02562 * 15 14 10 17 17 C 1.37877 * 120.00385 * 179.97438 * 15 14 10 18 18 N 1.31519 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47247 * 60.00469 * 19 17 15 21 21 H 1.48500 * 109.47402 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47369 * 300.00333 * 19 17 15 23 23 C 1.46843 * 111.19587 * 61.74363 * 8 7 6 24 24 C 1.53033 * 109.52558 * 298.25460 * 23 8 7 25 25 N 1.34949 * 107.74650 * 0.22078 * 4 3 2 26 26 H 0.96999 * 126.03421 * 179.76880 * 25 4 3 27 27 N 1.30837 * 125.89520 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46802 * 90.00361 * 1 2 3 29 29 H 1.08992 * 109.47156 * 210.00750 * 1 2 3 30 30 H 1.08997 * 109.46866 * 330.00863 * 1 2 3 31 31 H 1.07996 * 126.03951 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.52420 * 334.99575 * 5 4 3 33 33 H 1.09003 * 109.50543 * 297.55900 * 6 5 4 34 34 H 1.09000 * 109.50870 * 57.68333 * 6 5 4 35 35 H 1.09000 * 109.44785 * 180.83391 * 7 6 5 36 36 H 1.09002 * 109.43658 * 60.87730 * 7 6 5 37 37 H 1.08999 * 109.47280 * 172.12118 * 9 8 7 38 38 H 1.09004 * 109.47002 * 292.11730 * 9 8 7 39 39 H 1.09001 * 109.46794 * 295.00300 * 14 10 9 40 40 H 1.09005 * 109.47159 * 54.99611 * 14 10 9 41 41 H 0.97003 * 119.99668 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46058 * 178.23866 * 23 8 7 43 43 H 1.09002 * 109.46500 * 58.27507 * 23 8 7 44 44 H 1.09001 * 109.50435 * 299.23958 * 24 23 8 45 45 H 1.08999 * 109.53893 * 179.14159 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6144 0.7152 0.0006 5 6 4.8351 1.5986 0.0002 6 6 5.3249 1.7952 1.4376 7 6 6.6004 2.6434 1.4239 8 7 7.6304 1.9692 0.6233 9 6 8.9105 2.6854 0.7017 10 6 9.2801 2.9104 2.1692 11 1 8.4864 3.4723 2.6616 12 6 9.4482 1.6099 2.8378 13 7 9.5776 0.6073 3.3547 14 6 10.5889 3.6986 2.2505 15 6 10.8893 4.0265 3.6903 16 1 10.2143 3.7045 4.4697 17 6 12.0262 4.7367 4.0130 18 7 12.8483 5.1283 3.0641 19 14 12.3988 5.1425 5.7979 20 1 12.5296 3.8837 6.5749 21 1 13.6691 5.9076 5.8769 22 1 11.2938 5.9592 6.3610 23 6 7.2000 1.8118 -0.7718 24 6 5.9440 0.9390 -0.8242 25 7 3.6088 -0.6343 -0.0040 26 1 4.3908 -1.2081 -0.0079 27 7 2.2741 -1.0599 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8898 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.9925 2.1598 -0.0004 32 1 4.5845 2.5662 -0.4347 33 1 4.5548 2.3029 2.0183 34 1 5.5386 0.8246 1.8852 35 1 6.9608 2.7734 2.4443 36 1 6.3827 3.6188 0.9886 37 1 9.6879 2.0942 0.2178 38 1 8.8198 3.6479 0.1981 39 1 11.4002 3.0993 1.8374 40 1 10.4928 4.6224 1.6799 41 1 13.6480 5.6283 3.2911 42 1 7.9959 1.3376 -1.3461 43 1 6.9797 2.7911 -1.1967 44 1 6.1673 -0.0452 -0.4121 45 1 5.6155 0.8345 -1.8582 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273037244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:10 Heat of formation + Delta-G solvation = 60.129999 kcal Electronic energy + Delta-G solvation = -24005.787541 eV Core-core repulsion = 20637.024286 eV Total energy + Delta-G solvation = -3368.763255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31352 -40.21647 -38.00676 -35.93387 -35.14748 -33.67701 -32.89897 -31.75744 -30.60463 -28.76440 -28.32423 -25.99290 -24.35002 -23.79359 -23.01700 -21.53796 -21.16810 -20.17408 -18.59922 -18.37099 -18.12545 -16.87628 -16.39296 -15.93442 -15.86252 -15.60463 -15.45121 -14.91414 -14.69191 -14.51794 -14.39586 -14.20366 -14.06691 -13.77957 -13.56925 -13.54390 -13.36345 -13.13770 -13.05590 -12.92009 -12.77190 -12.46610 -12.39881 -12.14942 -12.01732 -11.96877 -11.53579 -11.50465 -11.39038 -11.24670 -11.02011 -10.54625 -10.19701 -9.52955 -9.15794 -8.19512 -6.27579 0.93420 1.40768 1.42609 1.49358 1.83181 1.97357 2.06400 2.13595 2.41209 2.94502 3.16055 3.35444 3.48228 3.73764 3.85813 3.89282 4.08795 4.23966 4.31379 4.35607 4.41183 4.50064 4.55672 4.68390 4.72739 4.77330 4.81615 4.85750 4.87943 4.92553 4.95578 5.00648 5.06429 5.09198 5.14280 5.17485 5.28889 5.42199 5.46651 5.62014 5.78951 5.79718 6.10126 6.22127 6.26458 6.39543 6.76806 6.82970 6.92982 7.40889 8.91044 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.028932 B = 0.002597 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.547394 B =10778.695543 C =11027.569347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.063 3.937 3 C -0.284 4.284 4 C 0.107 3.893 5 C -0.019 4.019 6 C -0.099 4.099 7 C 0.046 3.954 8 N -0.556 5.556 9 C 0.074 3.926 10 C 0.015 3.985 11 H 0.119 0.881 12 C 0.266 3.734 13 N -0.514 5.514 14 C 0.038 3.962 15 C -0.539 4.539 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.922 5.922 19 Si 0.946 3.054 20 H -0.283 1.283 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.058 3.942 24 C -0.108 4.108 25 N -0.476 5.476 26 H 0.440 0.560 27 N -0.338 5.338 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.000 1.000 40 H 0.037 0.963 41 H 0.264 0.736 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.064 -2.951 -11.512 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.313 4.313 4 C -0.022 4.022 5 C -0.039 4.039 6 C -0.138 4.138 7 C -0.082 4.082 8 N -0.282 5.282 9 C -0.055 4.055 10 C -0.006 4.006 11 H 0.137 0.863 12 C -0.051 4.051 13 N -0.192 5.192 14 C -0.001 4.001 15 C -0.577 4.577 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.772 3.228 20 H -0.208 1.208 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.069 4.069 24 C -0.146 4.146 25 N -0.184 5.184 26 H 0.285 0.715 27 N -0.162 5.162 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.182 0.818 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.019 0.981 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.645 -6.107 -10.575 24.852 hybrid contribution 1.145 1.667 0.661 2.128 sum -20.500 -4.440 -9.914 23.200 Atomic orbital electron populations 1.20294 0.84779 1.04088 1.03893 1.22927 0.98481 0.90668 0.98221 1.21454 0.90830 1.00649 1.18329 1.21326 0.97318 0.84649 0.98952 1.20013 0.89122 0.97815 0.96924 1.21577 0.96466 1.00259 0.95465 1.22258 0.91142 0.96096 0.98655 1.61951 1.02886 1.51385 1.11935 1.22050 0.91581 0.98640 0.93211 1.19329 1.01605 0.85072 0.94619 0.86301 1.29318 0.90289 0.93994 0.91459 1.80960 1.11748 1.14598 1.11855 1.18985 0.90135 0.94820 0.96111 1.21511 1.07501 1.34774 0.93940 0.92899 1.25697 0.96216 0.95903 1.00900 1.70022 1.13386 1.38926 1.33860 0.85781 0.77970 0.78142 0.80882 1.20846 1.20748 1.18668 1.22068 0.97179 0.99602 0.88039 1.21619 0.93676 0.98968 1.00373 1.46341 1.06982 1.05553 1.59561 0.71473 1.77240 0.87448 1.23919 1.27632 0.89391 0.91192 0.88614 0.81751 0.86795 0.89957 0.93295 0.91132 0.92320 0.90517 0.90944 0.98121 0.94494 0.92710 0.90207 0.92778 0.92333 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.45 71.24 0.74 -0.15 16 2 C 0.06 1.25 7.22 43.10 0.31 1.56 16 3 C -0.28 -5.05 10.65 21.99 0.23 -4.82 16 4 C 0.11 1.92 5.92 41.40 0.25 2.17 16 5 C -0.02 -0.27 2.64 -11.47 -0.03 -0.30 16 6 C -0.10 -1.79 5.37 30.69 0.16 -1.62 16 7 C 0.05 0.93 5.04 86.37 0.44 1.36 16 8 N -0.56 -12.51 4.38 -896.07 -3.93 -16.44 16 9 C 0.07 1.93 4.52 86.30 0.39 2.32 16 10 C 0.02 0.53 1.75 -12.60 -0.02 0.51 16 11 H 0.12 3.72 6.07 -2.39 -0.01 3.71 16 12 C 0.27 10.74 13.46 89.45 1.20 11.94 16 13 N -0.51 -23.01 18.53 20.00 0.37 -22.64 16 14 C 0.04 1.72 4.42 29.84 0.13 1.85 16 15 C -0.54 -28.10 8.60 25.60 0.22 -27.88 16 16 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 17 C 0.01 0.65 5.46 84.65 0.46 1.11 16 18 N -0.92 -52.31 13.29 21.45 0.28 -52.02 16 19 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C 0.06 0.98 5.46 86.32 0.47 1.45 16 24 C -0.11 -1.60 5.17 30.64 0.16 -1.44 16 25 N -0.48 -9.72 7.13 -48.01 -0.34 -10.06 16 26 H 0.44 7.72 8.11 -213.33 -1.73 5.99 16 27 N -0.34 -8.10 12.70 -47.38 -0.60 -8.70 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.67 5.71 -2.39 -0.01 1.65 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 42 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.99 7.35 -2.39 -0.02 0.97 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -67.41 368.18 2.19 -65.22 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -0.74 Total: 11.56 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 5.12 Total: -11.94 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.21 Total: -109.86 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.41 2.19 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273037244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.354 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds