Wall clock time and date at job start Tue Mar 31 2020 09:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38250 * 119.99931 * 2 1 4 4 C 1.38221 * 120.00101 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99853 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99843 * 359.74934 * 5 4 3 7 7 C 1.38216 * 119.99728 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00046 * 0.02562 * 7 2 1 9 9 N 1.46898 * 109.47151 * 80.00295 * 8 7 2 10 10 C 1.46951 * 110.99779 * 169.99862 * 9 8 7 11 11 C 1.53057 * 109.36450 * 176.80989 * 10 9 8 12 12 N 1.46955 * 109.36420 * 58.39722 * 11 10 9 13 13 C 1.46898 * 110.99823 * 176.81201 * 12 11 10 14 14 H 1.09003 * 109.47257 * 178.90280 * 13 12 11 15 15 C 1.53005 * 109.47119 * 58.90530 * 13 12 11 16 16 C 1.53003 * 109.47275 * 298.90681 * 13 12 11 17 17 C 1.50690 * 109.47147 * 295.41118 * 16 13 12 18 18 H 1.08011 * 120.00198 * 4.87576 * 17 16 13 19 19 C 1.37875 * 120.00343 * 184.87423 * 17 16 13 20 20 N 1.31513 * 119.99713 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00330 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47038 * 89.99899 * 21 19 17 23 23 H 1.48500 * 109.47343 * 210.00032 * 21 19 17 24 24 H 1.48499 * 109.47049 * 330.00225 * 21 19 17 25 25 C 1.46954 * 110.88213 * 300.68493 * 12 11 10 26 26 C 1.46955 * 111.00209 * 46.19481 * 9 8 7 27 27 H 1.08998 * 109.47093 * 270.01916 * 1 2 3 28 28 H 1.09004 * 109.47034 * 30.02277 * 1 2 3 29 29 H 1.09000 * 109.47248 * 150.02198 * 1 2 3 30 30 H 1.08000 * 120.00486 * 359.97438 * 3 2 1 31 31 H 1.07994 * 119.99962 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.00133 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.99907 * 180.26791 * 6 5 4 34 34 H 1.08994 * 109.47043 * 319.99690 * 8 7 2 35 35 H 1.09005 * 109.46760 * 199.99574 * 8 7 2 36 36 H 1.09001 * 109.49303 * 56.84147 * 10 9 8 37 37 H 1.09003 * 109.49323 * 296.77111 * 10 9 8 38 38 H 1.09001 * 109.48778 * 178.36928 * 11 10 9 39 39 H 1.09007 * 109.48496 * 298.42912 * 11 10 9 40 40 H 1.09004 * 109.47290 * 300.00300 * 15 13 12 41 41 H 1.09005 * 109.46747 * 59.99693 * 15 13 12 42 42 H 1.09000 * 109.47340 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.46844 * 55.41645 * 16 13 12 44 44 H 1.09000 * 109.46905 * 175.41331 * 16 13 12 45 45 H 0.96999 * 120.00194 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.48857 * 299.35086 * 25 12 11 47 47 H 1.08997 * 109.50673 * 179.30322 * 25 12 11 48 48 H 1.08995 * 109.48935 * 303.15502 * 26 9 8 49 49 H 1.09004 * 109.48709 * 63.22527 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1970 0.0074 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 7 0.9920 -2.8062 -1.3635 10 6 0.4636 -4.1747 -1.4502 11 6 -0.0691 -4.4245 -2.8632 12 7 1.0134 -4.2184 -3.8354 13 6 0.5608 -4.5226 -5.1994 14 1 1.3754 -4.3431 -5.9011 15 6 -0.6259 -3.6246 -5.5552 16 6 0.1325 -5.9892 -5.2796 17 6 1.3275 -6.8753 -5.0398 18 1 2.2784 -6.4388 -4.7718 19 6 1.2072 -8.2433 -5.1627 20 7 0.0493 -8.7749 -5.4885 21 14 2.6885 -9.3418 -4.8648 22 1 2.7405 -9.7245 -3.4309 23 1 2.5739 -10.5645 -5.6997 24 1 3.9285 -8.6095 -5.2269 25 6 1.5419 -2.8499 -3.7487 26 6 2.0744 -2.6001 -2.3358 27 1 -0.3633 0.0003 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 0.0000 0.0024 33 1 4.1206 -2.1322 0.0126 34 1 0.5809 -2.4229 0.6608 35 1 2.0991 -3.2995 0.3524 36 1 -0.3449 -4.2987 -0.7296 37 1 1.2593 -4.8865 -1.2305 38 1 -0.4351 -5.4485 -2.9380 39 1 -0.8833 -3.7307 -3.0728 40 1 -1.4405 -3.8040 -4.8535 41 1 -0.3207 -2.5797 -5.4981 42 1 -0.9615 -3.8499 -6.5675 43 1 -0.6254 -6.1883 -4.5218 44 1 -0.2792 -6.1940 -6.2678 45 1 -0.0354 -9.7373 -5.5753 46 1 0.7460 -2.1381 -3.9685 47 1 2.3501 -2.7255 -4.4693 48 1 2.4404 -1.5761 -2.2609 49 1 2.8885 -3.2939 -2.1261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278704203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:27 Heat of formation + Delta-G solvation = 14.872078 kcal Electronic energy + Delta-G solvation = -25484.046139 eV Core-core repulsion = 22216.860696 eV Total energy + Delta-G solvation = -3267.185443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.04917 -39.95781 -37.46221 -34.94911 -33.78921 -32.98192 -32.10513 -31.17417 -29.23832 -28.21099 -27.41502 -25.40293 -24.85368 -24.22008 -22.83411 -21.83322 -21.07275 -19.96195 -18.34429 -17.49398 -17.05863 -16.61140 -16.53925 -16.27863 -16.01679 -15.62794 -15.31903 -15.28344 -14.90240 -14.56186 -14.28154 -13.97970 -13.90115 -13.70122 -13.61984 -13.28933 -13.15309 -12.96739 -12.94481 -12.75563 -12.56879 -12.54982 -12.40411 -12.18938 -11.95478 -11.90488 -11.79229 -11.52243 -11.43390 -11.08878 -10.93447 -10.47193 -9.70672 -9.50093 -9.23512 -8.88976 -8.10123 -6.14763 0.44978 0.53273 1.40931 1.41224 1.52444 2.46715 2.74509 3.12380 3.16042 3.27262 3.78118 3.96108 3.99577 4.12227 4.13532 4.24392 4.29265 4.34607 4.40251 4.44577 4.46514 4.51196 4.54987 4.60340 4.67423 4.73732 4.78439 4.89119 4.90907 4.92657 4.96526 5.00867 5.07169 5.08392 5.14103 5.20751 5.22560 5.31962 5.45668 5.51318 5.61012 5.65970 5.71431 5.81498 5.90694 6.04009 6.07375 6.18650 6.34261 6.45893 6.54686 6.99484 7.51184 9.01837 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.003496 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.141290 B = 8008.250002 C = 8542.643373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.135 4.135 6 C -0.122 4.122 7 C -0.094 4.094 8 C 0.096 3.904 9 N -0.526 5.526 10 C 0.066 3.934 11 C 0.065 3.935 12 N -0.531 5.531 13 C 0.095 3.905 14 H 0.061 0.939 15 C -0.171 4.171 16 C 0.037 3.963 17 C -0.499 4.499 18 H 0.056 0.944 19 C -0.003 4.003 20 N -0.939 5.939 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.058 3.942 26 C 0.072 3.928 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.036 0.964 36 H 0.093 0.907 37 H 0.025 0.975 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.055 0.945 43 H -0.002 1.002 44 H -0.007 1.007 45 H 0.259 0.741 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 21.031 12.939 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.074 4.074 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.153 4.153 6 C -0.141 4.141 7 C -0.095 4.095 8 C -0.031 4.031 9 N -0.250 5.250 10 C -0.062 4.062 11 C -0.063 4.063 12 N -0.255 5.255 13 C -0.014 4.014 14 H 0.080 0.920 15 C -0.230 4.230 16 C 0.000 4.000 17 C -0.538 4.538 18 H 0.074 0.926 19 C -0.199 4.199 20 N -0.581 5.581 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.070 4.070 26 C -0.056 4.056 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.016 0.984 44 H 0.012 0.988 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.584 20.852 12.908 24.784 hybrid contribution 0.612 -1.239 -0.161 1.392 sum 4.196 19.612 12.747 23.764 Atomic orbital electron populations 1.20862 0.90344 1.03645 1.02521 1.19979 0.96968 0.92366 0.98102 1.21316 0.94663 0.97905 1.01085 1.21430 0.94457 0.98711 0.99313 1.21329 1.00729 0.92309 1.00922 1.21216 0.93717 0.98752 1.00395 1.19665 0.93545 0.94475 1.01788 1.21060 0.98588 0.93255 0.90201 1.62326 1.33563 1.24557 1.04595 1.22099 0.99263 0.88193 0.96637 1.22019 0.92684 1.00222 0.91412 1.62189 1.34350 1.24091 1.04900 1.21604 0.95292 0.95544 0.88922 0.92027 1.22350 0.99191 0.99840 1.01581 1.19060 0.95417 0.90882 0.94676 1.21480 0.97006 0.91355 1.43934 0.92598 1.25825 0.98328 0.99913 0.95871 1.70086 1.25647 1.11517 1.50870 0.85603 0.80212 0.78217 0.77897 1.20403 1.21127 1.19261 1.22159 0.99016 0.89049 0.96800 1.22036 0.92027 1.00483 0.91059 0.90667 0.91185 0.90728 0.84503 0.84122 0.84684 0.86480 0.88840 0.94555 0.88920 0.95619 0.92204 0.94180 0.93070 0.91755 0.92559 0.98384 0.98847 0.93254 0.94113 0.90975 0.89708 0.95777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.26 71.24 0.66 -1.33 16 2 C -0.07 -1.43 5.88 -19.87 -0.12 -1.55 16 3 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 4 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 5 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 6 C -0.12 -2.50 8.72 22.27 0.19 -2.31 16 7 C -0.09 -2.00 3.69 -19.86 -0.07 -2.08 16 8 C 0.10 2.13 4.54 85.56 0.39 2.52 16 9 N -0.53 -13.78 4.19 -900.30 -3.78 -17.56 16 10 C 0.07 1.98 5.58 86.31 0.48 2.47 16 11 C 0.06 2.33 4.82 86.31 0.42 2.74 16 12 N -0.53 -20.25 4.39 -870.45 -3.82 -24.07 16 13 C 0.09 3.92 2.30 44.92 0.10 4.03 16 14 H 0.06 2.62 8.12 -2.39 -0.02 2.60 16 15 C -0.17 -5.88 8.49 71.98 0.61 -5.27 16 16 C 0.04 1.92 4.26 29.85 0.13 2.05 16 17 C -0.50 -28.56 8.83 25.60 0.23 -28.33 16 18 H 0.06 3.20 7.73 -2.91 -0.02 3.17 16 19 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 20 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 21 Si 0.95 45.83 29.54 68.60 2.03 47.86 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 C 0.06 1.81 5.25 86.31 0.45 2.26 16 26 C 0.07 2.02 4.89 86.31 0.42 2.44 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.05 8.09 -2.38 -0.02 1.03 16 29 H 0.07 1.49 6.35 -2.39 -0.02 1.47 16 30 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 32 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.12 2.35 8.03 -2.91 -0.02 2.32 16 34 H 0.09 1.86 7.28 -2.39 -0.02 1.84 16 35 H 0.04 0.84 7.94 -2.38 -0.02 0.82 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 2.55 6.08 -2.39 -0.01 2.53 16 39 H 0.04 1.37 6.47 -2.38 -0.02 1.35 16 40 H 0.05 1.76 6.46 -2.39 -0.02 1.75 16 41 H 0.06 1.92 6.59 -2.38 -0.02 1.90 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.00 -0.11 6.13 -2.39 -0.01 -0.13 16 44 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.04 1.23 6.59 -2.38 -0.02 1.22 16 47 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 48 H 0.08 2.22 6.23 -2.39 -0.01 2.21 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -64.47 372.05 0.63 -63.84 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.90 Total: 15.41 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 5.02 Total: -27.99 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -7.31 Total: -99.12 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -64.47 0.63 -63.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278704203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.711 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds