Wall clock time and date at job start Tue Mar 31 2020 07:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00292 * 2 1 4 4 C 1.52998 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47249 * 185.00051 * 4 3 2 6 6 C 1.53006 * 109.47177 * 305.00110 * 4 3 2 7 7 C 1.50698 * 109.47051 * 184.99862 * 6 4 3 8 8 C 1.38231 * 119.99857 * 269.72433 * 7 6 4 9 9 C 1.38239 * 119.99621 * 179.77056 * 8 7 6 10 10 C 1.38233 * 120.00299 * 0.50261 * 9 8 7 11 11 C 1.38237 * 119.99531 * 359.75139 * 10 9 8 12 12 C 1.38232 * 120.00374 * 359.97438 * 11 10 9 13 13 N 1.46893 * 109.47241 * 64.99750 * 4 3 2 14 14 C 1.46910 * 110.99761 * 84.99964 * 13 4 3 15 15 C 1.53002 * 109.46906 * 180.02562 * 14 13 4 16 16 H 1.08996 * 109.47407 * 304.99784 * 15 14 13 17 17 C 1.47206 * 109.47021 * 65.00197 * 15 14 13 18 18 N 4.68344 * 106.01107 * 260.45711 * 2 1 3 19 19 C 1.52997 * 109.46817 * 185.00004 * 15 14 13 20 20 C 1.50698 * 109.46933 * 175.00167 * 19 15 14 21 21 H 1.08003 * 120.00121 * 0.02562 * 20 19 15 22 22 C 1.37882 * 119.99840 * 179.97438 * 20 19 15 23 23 N 1.31510 * 120.00071 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99922 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46815 * 89.99942 * 24 22 20 26 26 H 1.48498 * 109.46961 * 210.00195 * 24 22 20 27 27 H 1.48497 * 109.47305 * 330.00346 * 24 22 20 28 28 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47082 * 300.00334 * 1 2 3 30 30 H 1.09000 * 109.46868 * 59.99933 * 1 2 3 31 31 H 1.09007 * 109.46925 * 60.00138 * 3 2 1 32 32 H 1.08999 * 109.47247 * 300.00236 * 3 2 1 33 33 H 1.09002 * 109.46995 * 305.00179 * 6 4 3 34 34 H 1.08998 * 109.46828 * 64.99816 * 6 4 3 35 35 H 1.08003 * 120.00314 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.99915 * 180.23299 * 9 8 7 37 37 H 1.08000 * 120.00489 * 179.72772 * 10 9 8 38 38 H 1.08008 * 119.99938 * 179.97438 * 11 10 9 39 39 H 1.08004 * 120.00235 * 179.97438 * 12 11 10 40 40 H 1.00899 * 110.99952 * 321.05189 * 13 4 3 41 41 H 1.08997 * 109.46998 * 60.00442 * 14 13 4 42 42 H 1.08997 * 109.46873 * 300.00074 * 14 13 4 43 43 H 1.08998 * 109.47192 * 294.99969 * 19 15 14 44 44 H 1.09000 * 109.47325 * 55.00085 * 19 15 14 45 45 H 0.97004 * 119.99924 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 6 3.9781 0.3197 1.1826 7 6 5.4832 0.3011 1.2557 8 6 6.1959 -0.6726 0.5815 9 6 7.5768 -0.6867 0.6447 10 6 8.2444 0.2666 1.3905 11 6 7.5313 1.2372 2.0690 12 6 6.1508 1.2548 2.0012 13 7 3.9779 0.5622 -1.2542 14 6 4.1208 1.5655 -2.3177 15 6 4.5814 0.8809 -3.6062 16 1 5.4954 0.3195 -3.4127 17 6 3.5314 -0.0377 -4.0760 18 7 2.7208 -0.7463 -4.4395 19 6 4.8501 1.9391 -4.6780 20 6 5.4199 1.2769 -5.9059 21 1 5.5745 0.2081 -5.9206 22 6 5.7429 2.0355 -7.0111 23 7 5.5542 3.3368 -6.9934 24 14 6.4500 1.2148 -8.5330 25 1 5.3434 0.8154 -9.4392 26 1 7.3473 2.1660 -9.2366 27 1 7.2211 0.0104 -8.1329 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8463 0.8901 32 1 1.6887 1.8464 -0.8899 33 1 3.5745 0.7333 2.1068 34 1 3.6083 -0.6968 1.0476 35 1 5.6742 -1.4199 0.0020 36 1 8.1339 -1.4453 0.1149 37 1 9.3230 0.2530 1.4435 38 1 8.0528 1.9819 2.6521 39 1 5.5936 2.0129 2.5316 40 1 3.3478 -0.1744 -1.5343 41 1 4.8582 2.3101 -2.0180 42 1 3.1610 2.0529 -2.4887 43 1 3.9172 2.4406 -4.9354 44 1 5.5623 2.6705 -4.2960 45 1 5.7818 3.8705 -7.7708 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514825358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:42 Heat of formation + Delta-G solvation = -13.392159 kcal Electronic energy + Delta-G solvation = -24263.134641 eV Core-core repulsion = 20858.890475 eV Total energy + Delta-G solvation = -3404.244167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.46371 -38.40797 -37.08716 -35.50619 -33.85348 -32.71342 -31.26418 -30.71176 -29.26537 -27.01086 -26.10136 -25.57145 -22.95410 -22.37967 -21.85102 -21.51740 -20.32384 -16.99633 -16.67558 -16.58051 -16.37452 -15.93007 -15.84548 -15.12996 -14.83152 -14.72906 -14.56203 -14.09408 -13.38625 -13.24562 -13.18968 -13.03432 -12.78138 -12.62843 -12.37604 -12.08584 -12.00851 -11.81471 -11.68307 -11.57284 -11.19240 -11.12188 -11.00791 -10.78968 -10.73088 -10.71038 -10.50669 -10.24011 -9.83943 -9.51603 -9.21497 -8.74931 -8.52513 -8.44114 -8.19959 -6.08251 -4.11033 1.52458 1.59600 3.30792 3.37222 3.40962 3.58003 3.61439 3.67934 3.94348 4.32135 4.44645 4.70236 4.83908 4.94166 4.98996 5.05902 5.13219 5.19268 5.22679 5.27298 5.29897 5.32494 5.34545 5.50789 5.56103 5.59945 5.64201 5.67767 5.81939 5.85185 6.02438 6.19152 6.23274 6.24345 6.41164 6.57960 6.60961 6.69212 6.84016 6.93204 7.16872 7.22056 7.45400 7.53730 7.57042 7.87043 8.25056 8.44857 8.93508 9.54300 11.02694 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.004127 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.235531 B = 6783.519346 C = 8524.158559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.027 3.973 4 C 0.098 3.902 5 H 0.093 0.907 6 C -0.065 4.065 7 C -0.065 4.065 8 C -0.086 4.086 9 C -0.121 4.121 10 C -0.129 4.129 11 C -0.125 4.125 12 C -0.125 4.125 13 N -0.678 5.678 14 C 0.067 3.933 15 C 0.008 3.992 16 H 0.110 0.890 17 C 0.241 3.759 18 N -0.476 5.476 19 C 0.033 3.967 20 C -0.525 4.525 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.281 1.281 26 H -0.285 1.285 27 H -0.272 1.272 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.347 0.653 41 H 0.090 0.910 42 H 0.031 0.969 43 H 0.023 0.977 44 H 0.039 0.961 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -2.429 21.039 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.052 4.052 4 C -0.012 4.012 5 H 0.111 0.889 6 C -0.102 4.102 7 C -0.065 4.065 8 C -0.104 4.104 9 C -0.139 4.139 10 C -0.147 4.147 11 C -0.144 4.144 12 C -0.143 4.143 13 N -0.310 5.310 14 C -0.063 4.063 15 C -0.014 4.014 16 H 0.128 0.872 17 C -0.075 4.075 18 N -0.153 5.153 19 C -0.006 4.006 20 C -0.563 4.563 21 H 0.075 0.925 22 C -0.139 4.139 23 N -0.531 5.531 24 Si 0.718 3.282 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.197 1.197 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.167 0.833 41 H 0.108 0.892 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.057 0.943 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.555 -3.497 20.549 21.000 hybrid contribution -0.450 0.479 -1.190 1.359 sum -3.005 -3.018 19.359 19.822 Atomic orbital electron populations 1.22723 0.81127 1.02725 0.99791 1.87859 1.19574 1.27506 1.95338 1.23374 0.96060 0.85206 1.00550 1.21660 0.89559 0.98729 0.91269 0.88908 1.20504 0.91310 1.01713 0.96718 1.19704 0.95303 0.95018 0.96438 1.21014 0.93594 0.98399 0.97420 1.21158 0.94755 0.98981 0.99022 1.21069 0.99505 0.95801 0.98289 1.21022 0.94237 0.98833 1.00263 1.20978 0.94358 0.98836 1.00160 1.60600 1.54391 1.13066 1.02902 1.22111 1.00234 0.94158 0.89749 1.19302 0.92394 0.94701 0.94980 0.87188 1.29324 0.93536 0.92843 0.91846 1.81038 1.12192 1.11820 1.10290 1.19150 0.97932 0.92230 0.91241 1.21149 1.42591 0.93999 0.98564 0.92522 1.24945 0.95542 0.94780 0.98665 1.69938 1.48126 1.04797 1.30238 0.86603 0.79076 0.79368 0.83104 1.20714 1.21093 1.19699 0.89662 0.94270 0.94144 0.93006 0.93044 0.91334 0.90119 0.85948 0.86466 0.86745 0.86759 0.86791 0.83343 0.89208 0.95074 0.95893 0.94266 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.53 9.29 -35.23 -0.33 -4.85 16 3 C 0.03 0.28 5.61 37.16 0.21 0.49 16 4 C 0.10 1.07 2.40 -67.71 -0.16 0.91 16 5 H 0.09 0.97 7.80 -51.93 -0.40 0.57 16 6 C -0.06 -0.66 4.75 -27.88 -0.13 -0.80 16 7 C -0.06 -0.73 4.95 -104.63 -0.52 -1.25 16 8 C -0.09 -1.04 9.32 -39.58 -0.37 -1.41 16 9 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 10 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 11 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 12 C -0.13 -1.34 9.70 -39.58 -0.38 -1.72 16 13 N -0.68 -8.94 5.64 -106.72 -0.60 -9.54 16 14 C 0.07 1.00 4.92 -3.82 -0.02 0.98 16 15 C 0.01 0.15 2.42 -93.40 -0.23 -0.07 16 16 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 17 C 0.24 4.94 12.98 -20.75 -0.27 4.67 16 18 N -0.48 -10.51 18.54 42.17 0.78 -9.73 16 19 C 0.03 0.77 4.42 -27.89 -0.12 0.65 16 20 C -0.52 -14.09 8.60 -34.44 -0.30 -14.38 16 21 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 24 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.58 7.36 -51.93 -0.38 0.20 16 33 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.08 0.91 7.67 -51.93 -0.40 0.51 16 35 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.11 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.35 5.06 7.01 -39.29 -0.28 4.78 16 41 H 0.09 1.27 8.05 -51.93 -0.42 0.86 16 42 H 0.03 0.47 7.36 -51.93 -0.38 0.08 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -30.32 380.81 -8.45 -38.77 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.29 Total: 2.33 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -2.47 Total: -14.23 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.92 Total: -44.21 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.33 Total: -4.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.32 -8.45 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514825358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.377 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds