Wall clock time and date at job start Tue Mar 31 2020 07:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48503 * 109.46535 * 269.99776 * 3 2 1 5 5 H 1.48497 * 109.47005 * 29.99202 * 3 2 1 6 6 H 1.48495 * 109.47372 * 149.99684 * 3 2 1 7 7 C 1.37877 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00035 * 175.14828 * 7 2 1 9 9 C 1.50704 * 119.99772 * 355.41935 * 7 2 1 10 10 C 1.53002 * 115.55169 * 274.92999 * 9 7 2 11 11 N 1.46902 * 109.46866 * 294.79949 * 10 9 7 12 12 C 1.46898 * 110.99651 * 185.37362 * 11 10 9 13 13 C 1.50710 * 109.47056 * 180.02562 * 12 11 10 14 14 C 1.38603 * 120.71885 * 269.72517 * 13 12 11 15 15 N 1.32273 * 119.19167 * 179.78514 * 14 13 12 16 16 C 1.32495 * 120.74392 * 0.47497 * 15 14 13 17 17 N 1.38411 * 119.21717 * 179.75184 * 16 15 14 18 18 C 1.48540 * 110.99686 * 242.62832 * 17 16 15 19 19 C 1.54935 * 103.22202 * 159.72436 * 18 17 16 20 20 C 1.54597 * 102.92381 * 322.57973 * 19 18 17 21 21 C 1.47893 * 111.00200 * 0.02562 * 17 16 15 22 22 N 1.32491 * 121.56065 * 359.77760 * 16 15 14 23 23 C 1.32274 * 120.74411 * 359.97438 * 22 16 15 24 24 C 1.53004 * 117.49534 * 129.25757 * 9 7 2 25 25 C 1.52998 * 117.49596 * 60.60380 * 9 7 2 26 26 H 0.97004 * 120.00286 * 5.00657 * 1 2 3 27 27 H 1.08995 * 109.46680 * 54.79753 * 10 9 7 28 28 H 1.08993 * 109.47014 * 174.80229 * 10 9 7 29 29 H 1.00902 * 110.99538 * 61.42896 * 11 10 9 30 30 H 1.08996 * 109.47593 * 300.00366 * 12 11 10 31 31 H 1.09005 * 109.46551 * 60.00755 * 12 11 10 32 32 H 1.08002 * 120.40667 * 359.97438 * 14 13 12 33 33 H 1.09001 * 110.66181 * 278.15477 * 18 17 16 34 34 H 1.08997 * 110.67023 * 41.28592 * 18 17 16 35 35 H 1.09007 * 110.72195 * 204.22609 * 19 18 17 36 36 H 1.09002 * 110.72665 * 80.94491 * 19 18 17 37 37 H 1.08990 * 110.31345 * 263.04551 * 20 19 18 38 38 H 1.08998 * 110.30317 * 140.87202 * 20 19 18 39 39 H 1.09005 * 109.91933 * 333.50739 * 21 17 16 40 40 H 1.09002 * 109.91901 * 94.80211 * 21 17 16 41 41 H 1.08002 * 120.39997 * 180.02562 * 23 22 16 42 42 H 1.08998 * 117.49727 * 0.02562 * 24 9 7 43 43 H 1.09000 * 117.49374 * 145.02051 * 24 9 7 44 44 H 1.09004 * 117.49634 * 214.98118 * 25 9 7 45 45 H 1.08994 * 117.50107 * 359.96929 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2546 -2.4970 0.1054 10 6 0.9188 -2.9527 1.5268 11 7 2.1614 -3.2474 2.2529 12 6 1.8751 -3.8093 3.5796 13 6 3.1708 -4.0976 4.2933 14 6 3.7871 -5.3330 4.1704 15 7 4.9259 -5.5520 4.8067 16 6 5.4719 -4.6100 5.5617 17 7 6.6617 -4.8750 6.2175 18 6 6.4845 -4.8049 7.6906 19 6 7.6908 -5.6128 8.2315 20 6 7.8236 -6.7632 7.2073 21 6 7.1294 -6.2488 5.9325 22 7 4.9058 -3.4207 5.7042 23 6 3.7689 -3.1351 5.0913 24 6 1.5731 -3.5803 -0.9272 25 6 0.2454 -2.8219 -0.9977 26 1 -0.4851 0.8369 -0.0733 27 1 0.3753 -2.1614 2.0430 28 1 0.3013 -3.8498 1.4844 29 1 2.7412 -2.4249 2.3260 30 1 1.2928 -3.0933 4.1596 31 1 1.3079 -4.7334 3.4681 32 1 3.3446 -6.1064 3.5601 33 1 6.5283 -3.7715 8.0345 34 1 5.5450 -5.2709 7.9877 35 1 7.4777 -6.0047 9.2261 36 1 8.5920 -4.9998 8.2422 37 1 7.3226 -7.6580 7.5762 38 1 8.8746 -6.9722 7.0075 39 1 6.2801 -6.8872 5.6890 40 1 7.8372 -6.2357 5.1037 41 1 3.3125 -2.1637 5.2110 42 1 2.3252 -3.3507 -1.6819 43 1 1.5430 -4.6177 -0.5938 44 1 -0.6578 -3.3605 -0.7107 45 1 0.1234 -2.0930 -1.7989 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580612781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:20 Heat of formation + Delta-G solvation = 92.634129 kcal Electronic energy + Delta-G solvation = -23975.456235 eV Core-core repulsion = 20608.102464 eV Total energy + Delta-G solvation = -3367.353771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31441 -38.85971 -37.02583 -35.01291 -33.72485 -32.75866 -31.90540 -30.22796 -29.22449 -26.39020 -25.31731 -24.63541 -23.69143 -22.32209 -21.30846 -20.98691 -20.85339 -19.09137 -17.99705 -17.64618 -16.13860 -16.07528 -15.38467 -15.10531 -14.85924 -14.66145 -14.36710 -13.97466 -13.79506 -13.58014 -13.47814 -13.19939 -12.78798 -12.61413 -12.47393 -11.99744 -11.69789 -11.51171 -11.46419 -11.37679 -10.96644 -10.95986 -10.88457 -10.77902 -10.61501 -10.45843 -10.11909 -10.03546 -9.35789 -9.13106 -8.86420 -8.46300 -8.41129 -8.05190 -7.61197 -6.03110 -4.10723 0.94394 1.15911 3.13660 3.27273 3.34968 3.38727 3.71365 4.05114 4.27478 4.38844 4.51922 4.62615 4.72788 4.77861 4.88328 4.95621 5.01059 5.14385 5.17608 5.24889 5.48163 5.49332 5.50539 5.60121 5.68721 5.70324 5.75159 5.84048 5.88987 6.03333 6.16457 6.22606 6.36833 6.45103 6.53659 6.72112 6.77906 6.81481 6.91168 7.17572 7.19956 7.47017 7.59234 7.86077 7.89372 8.13025 8.13795 8.48815 8.93214 9.55519 11.03785 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.002941 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.440176 B = 9518.044647 C =10196.301079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.059 0.941 9 C 0.046 3.954 10 C 0.106 3.894 11 N -0.676 5.676 12 C 0.107 3.893 13 C -0.199 4.199 14 C 0.188 3.812 15 N -0.552 5.552 16 C 0.472 3.528 17 N -0.447 5.447 18 C 0.055 3.945 19 C -0.125 4.125 20 C -0.132 4.132 21 C 0.038 3.962 22 N -0.524 5.524 23 C 0.175 3.825 24 C -0.201 4.201 25 C -0.155 4.155 26 H 0.259 0.741 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.349 0.651 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.169 0.831 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.168 0.832 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.812 -12.096 15.393 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.133 4.133 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.046 3.954 10 C -0.023 4.023 11 N -0.308 5.308 12 C -0.024 4.024 13 C -0.204 4.204 14 C 0.021 3.979 15 N -0.270 5.270 16 C 0.116 3.884 17 N -0.168 5.168 18 C -0.072 4.072 19 C -0.163 4.163 20 C -0.171 4.171 21 C -0.089 4.089 22 N -0.241 5.241 23 C 0.007 3.993 24 C -0.238 4.238 25 C -0.193 4.193 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.167 0.833 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.186 0.814 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.186 0.814 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.006 -12.383 15.488 22.211 hybrid contribution -1.243 1.558 -0.097 1.995 sum 8.763 -10.826 15.392 20.758 Atomic orbital electron populations 1.70001 1.05818 1.26565 1.49311 1.24998 0.94789 0.98811 0.94709 0.86694 0.80034 0.83719 0.78230 1.20714 1.21283 1.19729 1.20475 0.92799 0.88797 1.51053 0.92270 1.18725 0.97962 0.92799 0.85947 1.21480 0.88719 0.96660 0.95402 1.60542 1.19300 1.37080 1.13866 1.20674 0.90967 1.00340 0.90403 1.21570 1.01115 0.96668 1.01077 1.22957 0.88188 0.95577 0.91190 1.68256 1.12427 1.33659 1.12700 1.21120 0.89020 0.86065 0.92221 1.61309 1.20432 1.27320 1.07697 1.23208 0.97858 1.02235 0.83860 1.22542 0.98383 0.96810 0.98549 1.22458 1.01506 0.98251 0.94849 1.22945 1.00665 0.87023 0.98303 1.68008 1.11137 1.19153 1.25776 1.23070 0.88758 0.98815 0.88657 1.22870 0.99740 0.95846 1.05370 1.22501 0.90833 1.01732 1.04255 0.93115 0.94903 0.94051 0.83250 0.94543 0.90473 0.81393 0.88628 0.93139 0.90423 0.90212 0.91110 0.90574 0.89700 0.89779 0.81444 0.90977 0.91768 0.92328 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.34 12.65 55.43 0.70 -23.64 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.49 -13.04 8.33 -34.44 -0.29 -13.33 16 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 9 C 0.05 1.11 1.65 -155.66 -0.26 0.85 16 10 C 0.11 2.23 5.54 -3.82 -0.02 2.21 16 11 N -0.68 -12.35 6.46 -115.06 -0.74 -13.09 16 12 C 0.11 1.52 5.85 -4.97 -0.03 1.49 16 13 C -0.20 -2.72 5.43 -104.35 -0.57 -3.29 16 14 C 0.19 2.53 11.00 -17.23 -0.19 2.34 16 15 N -0.55 -7.92 8.14 -13.93 -0.11 -8.03 16 16 C 0.47 6.97 6.98 -322.80 -2.25 4.71 16 17 N -0.45 -5.70 5.35 -171.42 -0.92 -6.62 16 18 C 0.05 0.55 6.31 -1.90 -0.01 0.54 16 19 C -0.12 -0.91 7.06 -24.87 -0.18 -1.08 16 20 C -0.13 -0.99 6.93 -25.37 -0.18 -1.16 16 21 C 0.04 0.40 6.33 -2.76 -0.02 0.38 16 22 N -0.52 -7.96 10.21 -13.93 -0.14 -8.10 16 23 C 0.17 2.44 11.00 -17.23 -0.19 2.25 16 24 C -0.20 -4.45 9.96 -26.69 -0.27 -4.71 16 25 C -0.16 -3.64 9.14 -26.70 -0.24 -3.89 16 26 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 29 H 0.35 6.86 8.30 -39.29 -0.33 6.53 16 30 H 0.04 0.51 8.10 -51.93 -0.42 0.08 16 31 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.52 7.99 -51.93 -0.42 0.10 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.97 6.46 -51.93 -0.34 0.63 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 42 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -29.41 369.47 -12.83 -42.24 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.38 Total: 6.86 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -4.78 Total: -10.93 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -1.22 Total: -59.49 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.41 -12.83 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580612781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.871 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds