Wall clock time and date at job start Tue Mar 31 2020 07:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00464 * 2 1 4 4 O 1.21551 * 119.99940 * 0.02562 * 3 2 1 5 5 C 1.47842 * 120.00455 * 180.02562 * 3 2 1 6 6 C 1.39603 * 120.14360 * 0.02562 * 5 3 2 7 7 C 1.37931 * 119.85409 * 179.97438 * 6 5 3 8 8 C 1.38383 * 120.14561 * 0.02665 * 7 6 5 9 9 C 1.38338 * 120.29351 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.92733 * 179.70346 * 9 8 7 11 11 N 1.46894 * 109.47047 * 90.00153 * 10 9 8 12 12 C 1.46849 * 111.00067 * 66.04413 * 11 10 9 13 13 C 1.53038 * 109.52016 * 174.15755 * 12 11 10 14 14 C 1.53118 * 109.27843 * 59.18625 * 13 12 11 15 15 C 1.53125 * 109.15778 * 302.33769 * 14 13 12 16 16 H 1.08994 * 109.50356 * 297.71941 * 15 14 13 17 17 C 1.50698 * 109.50141 * 177.63528 * 15 14 13 18 18 H 1.08007 * 120.00202 * 245.43540 * 17 15 14 19 19 C 1.37874 * 120.00224 * 65.44263 * 17 15 14 20 20 N 1.31516 * 119.99859 * 9.55752 * 19 17 15 21 21 Si 1.86803 * 120.00144 * 189.56601 * 19 17 15 22 22 H 1.48495 * 109.47153 * 94.98659 * 21 19 17 23 23 H 1.48507 * 109.46757 * 214.98535 * 21 19 17 24 24 H 1.48504 * 109.47050 * 334.98551 * 21 19 17 25 25 C 1.46851 * 110.99850 * 301.83342 * 11 10 9 26 26 C 1.37978 * 120.14451 * 359.97438 * 9 8 7 27 27 H 1.09000 * 109.47598 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46852 * 299.99623 * 1 2 3 29 29 H 1.08999 * 109.47166 * 59.99081 * 1 2 3 30 30 H 0.97008 * 119.99713 * 180.02562 * 2 1 3 31 31 H 1.08006 * 120.07031 * 359.95628 * 6 5 3 32 32 H 1.08006 * 119.92812 * 180.02562 * 7 6 5 33 33 H 1.08005 * 119.85124 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47072 * 210.00034 * 10 9 8 35 35 H 1.08994 * 109.46918 * 329.99997 * 10 9 8 36 36 H 1.09000 * 109.46179 * 294.17635 * 12 11 10 37 37 H 1.08996 * 109.46027 * 54.14686 * 12 11 10 38 38 H 1.09005 * 109.50305 * 179.12129 * 13 12 11 39 39 H 1.08994 * 109.50776 * 299.24137 * 13 12 11 40 40 H 1.08994 * 109.52811 * 62.24261 * 14 13 12 41 41 H 1.09001 * 109.52702 * 182.43818 * 14 13 12 42 42 H 0.97001 * 120.00135 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.46417 * 305.85370 * 25 11 10 44 44 H 1.09001 * 109.46188 * 65.83232 * 25 11 10 45 45 H 1.07999 * 120.07732 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6173 1.1671 -0.0006 6 6 4.3184 -0.0401 -0.0017 7 6 5.6977 -0.0332 -0.0027 8 6 6.3866 1.1670 -0.0022 9 6 5.6980 2.3668 -0.0011 10 6 6.4566 3.6690 0.0063 11 7 6.7087 4.0966 -1.3762 12 6 5.4530 4.4276 -2.0620 13 6 5.7626 5.0053 -3.4449 14 6 6.5535 3.9762 -4.2573 15 6 7.8327 3.6126 -3.4982 16 1 8.4561 4.5000 -3.3897 17 6 8.5887 2.5569 -4.2632 18 1 8.7130 1.5700 -3.8423 19 6 9.1218 2.8509 -5.5002 20 7 9.1371 4.0934 -5.9312 21 14 9.8222 1.4845 -6.5642 22 1 8.7832 1.0168 -7.5164 23 1 10.9926 1.9972 -7.3210 24 1 10.2476 0.3536 -5.7008 25 6 7.4633 3.0752 -2.1137 26 6 4.3183 2.3739 -0.0011 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 1.9500 -0.8401 -0.0004 31 1 3.7818 -0.9775 -0.0014 32 1 6.2413 -0.9665 -0.0040 33 1 7.4666 1.1669 -0.0026 34 1 5.8684 4.4292 0.5202 35 1 7.4063 3.5333 0.5236 36 1 4.8505 3.5259 -2.1715 37 1 4.9023 5.1634 -1.4761 38 1 4.8300 5.2364 -3.9599 39 1 6.3535 5.9146 -3.3356 40 1 5.9478 3.0813 -4.4000 41 1 6.8136 4.3997 -5.2274 42 1 9.5118 4.3002 -6.8017 43 1 8.3724 2.8288 -1.5653 44 1 6.8512 2.1799 -2.2231 45 1 3.7818 3.3113 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:54 Heat of formation + Delta-G solvation = -16.785573 kcal Electronic energy + Delta-G solvation = -24947.170054 eV Core-core repulsion = 21542.778738 eV Total energy + Delta-G solvation = -3404.391316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40753 -39.10276 -37.50766 -34.90613 -34.05205 -32.32245 -31.27836 -30.39008 -29.78953 -27.23099 -25.92990 -24.92671 -23.44673 -22.54314 -21.34511 -21.25863 -20.26225 -18.69297 -17.81998 -16.38095 -16.35807 -16.04705 -15.40342 -15.12770 -14.98360 -14.76634 -14.29998 -14.03970 -13.79822 -13.75246 -13.26962 -13.18475 -12.64565 -12.56849 -12.49006 -12.23052 -12.06793 -11.74486 -11.66327 -11.29585 -11.09197 -10.94255 -10.66018 -10.62247 -10.13765 -10.10468 -9.88281 -9.47586 -9.41846 -9.06323 -8.89764 -8.78783 -8.70101 -8.27720 -7.69337 -5.98756 -4.00161 0.81574 1.32137 2.78256 2.97771 3.31201 3.38716 3.40703 3.80972 4.42520 4.51663 4.60283 4.72995 4.84179 4.93833 5.06884 5.22325 5.28665 5.32777 5.33616 5.48151 5.56017 5.73511 5.76835 5.88044 5.92711 6.04041 6.10365 6.11437 6.21929 6.28078 6.33353 6.44069 6.51992 6.57797 6.71864 6.75718 6.85817 6.96272 7.21708 7.22681 7.34353 7.64981 7.75984 7.79625 8.01701 8.03357 8.13769 8.49682 9.04111 9.62592 11.10472 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.003815 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.245002 B = 7337.883672 C = 7647.889456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.735 5.735 3 C 0.560 3.440 4 O -0.536 6.536 5 C -0.144 4.144 6 C -0.092 4.092 7 C -0.127 4.127 8 C -0.073 4.073 9 C -0.118 4.118 10 C 0.089 3.911 11 N -0.525 5.525 12 C 0.059 3.941 13 C -0.118 4.118 14 C -0.105 4.105 15 C 0.053 3.947 16 H 0.041 0.959 17 C -0.516 4.516 18 H 0.053 0.947 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.885 3.115 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.065 3.935 26 C -0.048 4.048 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.401 0.599 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.028 0.972 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.259 0.741 43 H 0.058 0.942 44 H 0.024 0.976 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 -8.617 13.654 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.388 5.388 3 C 0.349 3.651 4 O -0.414 6.414 5 C -0.147 4.147 6 C -0.111 4.111 7 C -0.145 4.145 8 C -0.092 4.092 9 C -0.121 4.121 10 C -0.039 4.039 11 N -0.247 5.247 12 C -0.069 4.069 13 C -0.156 4.156 14 C -0.143 4.143 15 C 0.034 3.966 16 H 0.059 0.941 17 C -0.554 4.554 18 H 0.071 0.929 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.713 3.287 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.061 4.061 26 C -0.067 4.067 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.236 0.764 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.125 -7.288 13.501 19.556 hybrid contribution 0.027 -2.082 -0.827 2.240 sum -12.099 -9.370 12.674 19.870 Atomic orbital electron populations 1.21542 0.79330 1.02207 1.02499 1.45711 1.07828 1.08714 1.76502 1.18385 0.87447 0.83603 0.75705 1.90770 1.70031 1.31161 1.49412 1.19805 0.92175 0.94715 1.08032 1.21171 0.94703 0.96406 0.98778 1.21077 0.93853 0.98442 1.01149 1.21393 1.00555 0.91813 0.95464 1.20848 0.93910 0.97564 0.99742 1.21344 0.98965 0.90890 0.92696 1.62442 1.19482 1.42115 1.00691 1.22081 0.90432 0.98537 0.95832 1.21663 0.99355 1.00255 0.94281 1.21586 0.96744 0.95697 1.00257 1.18679 0.92858 0.96978 0.88054 0.94117 1.21099 1.34216 0.97535 1.02595 0.92918 1.24921 0.95578 0.95078 0.98030 1.69979 1.45671 1.17155 1.19534 0.86701 0.78568 0.82620 0.80828 1.20819 1.21309 1.19953 1.22369 0.95361 0.91539 0.96874 1.21162 0.93355 0.97465 0.94764 0.90619 0.92151 0.92055 0.76400 0.86134 0.85430 0.85298 0.90353 0.89889 0.95340 0.92313 0.93500 0.91923 0.95044 0.90965 0.93086 0.92335 0.95731 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 59.85 0.64 1.32 16 2 N -0.74 -6.93 5.66 -68.05 -0.39 -7.32 16 3 C 0.56 7.55 7.77 -12.33 -0.10 7.46 16 4 O -0.54 -9.13 16.35 5.32 0.09 -9.04 16 5 C -0.14 -1.91 5.87 -104.97 -0.62 -2.52 16 6 C -0.09 -0.99 9.54 -39.18 -0.37 -1.37 16 7 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 8 C -0.07 -0.96 8.01 -39.49 -0.32 -1.28 16 9 C -0.12 -1.68 4.03 -104.68 -0.42 -2.10 16 10 C 0.09 1.30 5.55 -4.98 -0.03 1.27 16 11 N -0.53 -9.57 4.86 -236.11 -1.15 -10.71 16 12 C 0.06 1.07 4.83 -3.83 -0.02 1.05 16 13 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 14 C -0.10 -2.49 5.09 -26.61 -0.14 -2.63 16 15 C 0.05 1.33 2.13 -91.69 -0.19 1.13 16 16 H 0.04 1.14 8.09 -51.93 -0.42 0.72 16 17 C -0.52 -14.08 8.48 -34.44 -0.29 -14.37 16 18 H 0.05 1.42 7.77 -52.48 -0.41 1.01 16 19 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 20 N -0.89 -25.55 12.18 55.43 0.68 -24.87 16 21 Si 0.88 21.23 29.55 -169.99 -5.02 16.21 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.07 1.36 3.76 -3.83 -0.01 1.34 16 26 C -0.05 -0.69 7.67 -39.18 -0.30 -0.99 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.40 2.62 6.87 -40.82 -0.28 2.34 16 31 H 0.12 0.88 6.41 -52.48 -0.34 0.55 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.13 1.61 8.01 -52.48 -0.42 1.19 16 34 H 0.08 1.03 8.00 -51.93 -0.42 0.62 16 35 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.03 0.54 6.56 -51.93 -0.34 0.20 16 37 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.91 6.98 -51.93 -0.36 1.54 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 44 H 0.02 0.52 6.46 -51.93 -0.34 0.18 16 45 H 0.13 1.98 7.63 -52.49 -0.40 1.58 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -32.08 356.96 -10.31 -42.38 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.07 Total: 2.30 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -2.82 Total: -14.32 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.86 Total: -42.90 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.08 -10.31 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.598 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds