Wall clock time and date at job start Tue Mar 31 2020 07:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00464 * 2 1 4 4 O 1.21551 * 119.99940 * 0.02562 * 3 2 1 5 5 C 1.47842 * 120.00455 * 180.02562 * 3 2 1 6 6 C 1.39603 * 120.14360 * 0.02562 * 5 3 2 7 7 C 1.37931 * 119.85409 * 179.97438 * 6 5 3 8 8 C 1.38383 * 120.14561 * 0.02665 * 7 6 5 9 9 C 1.38338 * 120.29351 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.92733 * 179.70346 * 9 8 7 11 11 N 1.46894 * 109.47047 * 90.00153 * 10 9 8 12 12 C 1.46849 * 111.00067 * 66.04413 * 11 10 9 13 13 C 1.53038 * 109.52016 * 174.15755 * 12 11 10 14 14 C 1.53118 * 109.27843 * 59.18625 * 13 12 11 15 15 C 1.53125 * 109.15778 * 302.33769 * 14 13 12 16 16 H 1.08994 * 109.50356 * 297.71941 * 15 14 13 17 17 C 1.50698 * 109.50141 * 177.63528 * 15 14 13 18 18 H 1.08007 * 120.00202 * 245.43540 * 17 15 14 19 19 C 1.37874 * 120.00224 * 65.44263 * 17 15 14 20 20 N 1.31516 * 119.99859 * 9.55752 * 19 17 15 21 21 Si 1.86803 * 120.00144 * 189.56601 * 19 17 15 22 22 H 1.48495 * 109.47153 * 94.98659 * 21 19 17 23 23 H 1.48507 * 109.46757 * 214.98535 * 21 19 17 24 24 H 1.48504 * 109.47050 * 334.98551 * 21 19 17 25 25 C 1.46851 * 110.99850 * 301.83342 * 11 10 9 26 26 C 1.37978 * 120.14451 * 359.97438 * 9 8 7 27 27 H 1.09000 * 109.47598 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46852 * 299.99623 * 1 2 3 29 29 H 1.08999 * 109.47166 * 59.99081 * 1 2 3 30 30 H 0.97008 * 119.99713 * 180.02562 * 2 1 3 31 31 H 1.08006 * 120.07031 * 359.95628 * 6 5 3 32 32 H 1.08006 * 119.92812 * 180.02562 * 7 6 5 33 33 H 1.08005 * 119.85124 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47072 * 210.00034 * 10 9 8 35 35 H 1.08994 * 109.46918 * 329.99997 * 10 9 8 36 36 H 1.09000 * 109.46179 * 294.17635 * 12 11 10 37 37 H 1.08996 * 109.46027 * 54.14686 * 12 11 10 38 38 H 1.09005 * 109.50305 * 179.12129 * 13 12 11 39 39 H 1.08994 * 109.50776 * 299.24137 * 13 12 11 40 40 H 1.08994 * 109.52811 * 62.24261 * 14 13 12 41 41 H 1.09001 * 109.52702 * 182.43818 * 14 13 12 42 42 H 0.97001 * 120.00135 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.46417 * 305.85370 * 25 11 10 44 44 H 1.09001 * 109.46188 * 65.83232 * 25 11 10 45 45 H 1.07999 * 120.07732 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6173 1.1671 -0.0006 6 6 4.3184 -0.0401 -0.0017 7 6 5.6977 -0.0332 -0.0027 8 6 6.3866 1.1670 -0.0022 9 6 5.6980 2.3668 -0.0011 10 6 6.4566 3.6690 0.0063 11 7 6.7087 4.0966 -1.3762 12 6 5.4530 4.4276 -2.0620 13 6 5.7626 5.0053 -3.4449 14 6 6.5535 3.9762 -4.2573 15 6 7.8327 3.6126 -3.4982 16 1 8.4561 4.5000 -3.3897 17 6 8.5887 2.5569 -4.2632 18 1 8.7130 1.5700 -3.8423 19 6 9.1218 2.8509 -5.5002 20 7 9.1371 4.0934 -5.9312 21 14 9.8222 1.4845 -6.5642 22 1 8.7832 1.0168 -7.5164 23 1 10.9926 1.9972 -7.3210 24 1 10.2476 0.3536 -5.7008 25 6 7.4633 3.0752 -2.1137 26 6 4.3183 2.3739 -0.0011 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 1.9500 -0.8401 -0.0004 31 1 3.7818 -0.9775 -0.0014 32 1 6.2413 -0.9665 -0.0040 33 1 7.4666 1.1669 -0.0026 34 1 5.8684 4.4292 0.5202 35 1 7.4063 3.5333 0.5236 36 1 4.8505 3.5259 -2.1715 37 1 4.9023 5.1634 -1.4761 38 1 4.8300 5.2364 -3.9599 39 1 6.3535 5.9146 -3.3356 40 1 5.9478 3.0813 -4.4000 41 1 6.8136 4.3997 -5.2274 42 1 9.5118 4.3002 -6.8017 43 1 8.3724 2.8288 -1.5653 44 1 6.8512 2.1799 -2.2231 45 1 3.7818 3.3113 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:53 Heat of formation + Delta-G solvation = -37.943751 kcal Electronic energy + Delta-G solvation = -24948.087541 eV Core-core repulsion = 21542.778738 eV Total energy + Delta-G solvation = -3405.308804 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43220 -40.32239 -38.82283 -35.92132 -35.61929 -34.02548 -32.32476 -31.71178 -31.50462 -28.06109 -27.22002 -26.85592 -24.45114 -23.92031 -22.96549 -22.49444 -21.29791 -20.33257 -18.87449 -18.36953 -17.32778 -17.02102 -16.76773 -16.32826 -16.28183 -16.00077 -15.73578 -15.47063 -15.13104 -14.74540 -14.71133 -14.32341 -14.15993 -14.02780 -13.74841 -13.41266 -13.13984 -13.10125 -12.95263 -12.82606 -12.63548 -12.53078 -12.31551 -12.12196 -11.84475 -11.73965 -11.38342 -11.15443 -10.84758 -10.67765 -10.41052 -10.30576 -9.87949 -9.78327 -9.15350 -8.10663 -6.19191 -0.16433 0.35818 1.41001 1.42380 1.52272 1.78769 2.17335 2.43849 2.81672 3.19874 3.22150 3.66966 3.76677 3.89937 4.11526 4.15132 4.25018 4.25797 4.32577 4.41969 4.43493 4.59138 4.62719 4.63889 4.75236 4.82508 4.88106 4.90428 4.92559 4.96777 5.02201 5.08237 5.17087 5.26027 5.33352 5.36081 5.39907 5.44309 5.56454 5.64718 5.90598 5.95187 6.04235 6.17057 6.32050 6.44669 6.47269 6.93983 7.12364 7.47349 8.98364 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.003815 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.245002 B = 7337.883672 C = 7647.889456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.718 5.718 3 C 0.554 3.446 4 O -0.583 6.583 5 C -0.157 4.157 6 C -0.079 4.079 7 C -0.127 4.127 8 C -0.086 4.086 9 C -0.130 4.130 10 C 0.091 3.909 11 N -0.536 5.536 12 C 0.067 3.933 13 C -0.112 4.112 14 C -0.096 4.096 15 C 0.051 3.949 16 H 0.000 1.000 17 C -0.532 4.532 18 H 0.054 0.946 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.949 3.051 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.263 1.263 25 C 0.085 3.915 26 C -0.064 4.064 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.418 0.582 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.023 0.977 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.024 0.976 41 H 0.038 0.962 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.022 0.978 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.737 -11.439 14.696 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.343 3.657 4 O -0.464 6.464 5 C -0.161 4.161 6 C -0.098 4.098 7 C -0.145 4.145 8 C -0.105 4.105 9 C -0.132 4.132 10 C -0.036 4.036 11 N -0.258 5.258 12 C -0.060 4.060 13 C -0.150 4.150 14 C -0.135 4.135 15 C 0.032 3.968 16 H 0.019 0.981 17 C -0.571 4.571 18 H 0.073 0.927 19 C -0.184 4.184 20 N -0.557 5.557 21 Si 0.775 3.225 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.187 1.187 25 C -0.042 4.042 26 C -0.083 4.083 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.255 0.745 31 H 0.178 0.822 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.041 0.959 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.040 0.960 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.857 -10.165 14.566 21.928 hybrid contribution 0.218 -1.244 -1.109 1.680 sum -12.639 -11.409 13.457 21.703 Atomic orbital electron populations 1.21735 0.78106 1.04615 1.01590 1.45648 1.08684 1.08238 1.74444 1.18559 0.87693 0.84038 0.75460 1.90743 1.70808 1.32954 1.51925 1.19948 0.92286 0.95295 1.08528 1.21575 0.94728 0.97037 0.96438 1.21453 0.94249 0.98911 0.99838 1.21596 1.00971 0.92285 0.95614 1.20719 0.93756 0.97603 1.01150 1.21382 1.00041 0.91910 0.90309 1.62349 1.19586 1.41682 1.02164 1.21995 0.90466 0.98745 0.94838 1.21594 0.99384 0.98716 0.95336 1.21397 0.96742 0.96187 0.99125 1.18605 0.92504 0.95012 0.90704 0.98129 1.21480 1.34370 0.98059 1.03182 0.92749 1.25718 0.96132 0.97202 0.99329 1.70115 1.46660 1.19104 1.19847 0.85677 0.77797 0.79970 0.79050 1.20454 1.21107 1.18744 1.21974 0.95777 0.91675 0.94769 1.21136 0.93560 0.97711 0.95940 0.86520 0.92788 0.93318 0.74468 0.82162 0.82510 0.84970 0.88998 0.88761 0.95878 0.89999 0.91658 0.92788 0.95735 0.94355 0.93152 0.92175 0.95965 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.70 127.77 1.37 2.46 16 2 N -0.72 -11.72 5.66 -487.48 -2.76 -14.48 16 3 C 0.55 14.31 7.77 86.79 0.67 14.98 16 4 O -0.58 -19.99 16.35 -3.88 -0.06 -20.06 16 5 C -0.16 -3.92 5.87 -20.09 -0.12 -4.03 16 6 C -0.08 -1.45 9.54 22.53 0.21 -1.24 16 7 C -0.13 -2.48 10.03 22.23 0.22 -2.26 16 8 C -0.09 -2.09 8.01 22.33 0.18 -1.92 16 9 C -0.13 -3.55 4.03 -19.90 -0.08 -3.63 16 10 C 0.09 2.56 5.55 85.56 0.48 3.03 16 11 N -0.54 -19.33 4.86 -900.93 -4.38 -23.70 16 12 C 0.07 2.41 4.83 86.33 0.42 2.83 16 13 C -0.11 -4.55 6.09 30.65 0.19 -4.36 16 14 C -0.10 -4.72 5.09 30.68 0.16 -4.56 16 15 C 0.05 2.60 2.13 -11.48 -0.02 2.58 16 16 H 0.00 0.03 8.09 -2.39 -0.02 0.01 16 17 C -0.53 -29.51 8.48 25.60 0.22 -29.29 16 18 H 0.05 2.92 7.77 -2.91 -0.02 2.90 16 19 C 0.02 0.85 5.22 84.65 0.44 1.29 16 20 N -0.92 -54.52 12.18 21.45 0.26 -54.26 16 21 Si 0.95 43.74 29.55 68.60 2.03 45.77 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 C 0.09 3.55 3.76 86.33 0.32 3.88 16 26 C -0.06 -1.80 7.67 22.53 0.17 -1.63 16 27 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.42 3.83 6.87 -92.70 -0.64 3.19 16 31 H 0.16 1.55 6.41 -2.91 -0.02 1.53 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.13 3.07 8.01 -2.91 -0.02 3.05 16 34 H 0.09 2.32 8.00 -2.39 -0.02 2.30 16 35 H 0.09 2.41 8.08 -2.39 -0.02 2.39 16 36 H 0.02 0.86 6.56 -2.39 -0.02 0.84 16 37 H 0.08 2.56 8.06 -2.39 -0.02 2.54 16 38 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.04 2.10 6.98 -2.39 -0.02 2.08 16 42 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.06 2.44 8.12 -2.39 -0.02 2.42 16 44 H 0.02 0.93 6.46 -2.39 -0.02 0.92 16 45 H 0.12 3.59 7.63 -2.91 -0.02 3.57 16 Total: -1.00 -72.28 356.96 0.26 -72.02 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.34 Total: 16.60 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.83 Total: -21.89 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -6.88 Total: -92.45 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.06 Total: -20.06 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -72.28 0.26 -72.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.077 kcal (2) G-P(sol) polarization free energy of solvation -72.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds