Wall clock time and date at job start Tue Mar 31 2020 07:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00074 * 2 1 4 4 O 1.21552 * 119.99791 * 359.97438 * 3 2 1 5 5 C 1.47844 * 119.99758 * 179.97438 * 3 2 1 6 6 C 1.39596 * 120.14774 * 359.97438 * 5 3 2 7 7 C 1.37930 * 119.85327 * 180.02562 * 6 5 3 8 8 C 1.38383 * 120.14724 * 359.74273 * 7 6 5 9 9 C 1.38339 * 120.29050 * 0.51454 * 8 7 6 10 10 C 1.50701 * 119.93160 * 179.76531 * 9 8 7 11 11 N 1.46896 * 109.47043 * 269.72704 * 10 9 8 12 12 C 1.46850 * 111.00472 * 66.04154 * 11 10 9 13 13 C 1.53036 * 109.52384 * 185.84130 * 12 11 10 14 14 C 1.53114 * 109.27799 * 300.81924 * 13 12 11 15 15 C 1.53120 * 109.16161 * 57.65854 * 14 13 12 16 16 H 1.08998 * 109.50493 * 62.28140 * 15 14 13 17 17 C 1.50699 * 109.50204 * 182.40736 * 15 14 13 18 18 H 1.08000 * 120.00193 * 120.00336 * 17 15 14 19 19 C 1.37879 * 119.99808 * 299.99151 * 17 15 14 20 20 N 1.31517 * 119.99723 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00081 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47040 * 90.00378 * 21 19 17 23 23 H 1.48492 * 109.47101 * 210.00290 * 21 19 17 24 24 H 1.48501 * 109.46905 * 330.00471 * 21 19 17 25 25 C 1.46846 * 110.99998 * 190.25565 * 11 10 9 26 26 C 1.37977 * 120.14361 * 359.48348 * 9 8 7 27 27 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47396 * 300.00331 * 1 2 3 29 29 H 1.09006 * 109.47196 * 60.00215 * 1 2 3 30 30 H 0.97001 * 120.00092 * 180.02562 * 2 1 3 31 31 H 1.07996 * 120.06835 * 0.04350 * 6 5 3 32 32 H 1.08004 * 119.92619 * 180.02562 * 7 6 5 33 33 H 1.07995 * 119.85944 * 180.28244 * 8 7 6 34 34 H 1.08999 * 109.47078 * 149.71952 * 10 9 8 35 35 H 1.09003 * 109.46796 * 29.72318 * 10 9 8 36 36 H 1.08995 * 109.45831 * 65.81919 * 12 11 10 37 37 H 1.08998 * 109.45719 * 305.85769 * 12 11 10 38 38 H 1.09004 * 109.50109 * 60.76189 * 13 12 11 39 39 H 1.08997 * 109.49831 * 180.87683 * 13 12 11 40 40 H 1.08995 * 109.52025 * 177.56309 * 14 13 12 41 41 H 1.09002 * 109.52325 * 297.75085 * 14 13 12 42 42 H 0.97006 * 119.99407 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.46639 * 54.13954 * 25 11 10 44 44 H 1.09010 * 109.45973 * 294.17120 * 25 11 10 45 45 H 1.08001 * 120.07655 * 180.23211 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6173 1.1671 0.0006 6 6 4.3184 -0.0400 0.0017 7 6 5.6976 -0.0330 0.0027 8 6 6.3865 1.1671 -0.0027 9 6 5.6980 2.3670 0.0016 10 6 6.4564 3.6692 0.0010 11 7 6.7019 4.0935 1.3858 12 6 7.6081 3.1616 2.0690 13 6 7.7254 3.5513 3.5443 14 6 8.2610 4.9820 3.6482 15 6 7.3250 5.9255 2.8878 16 1 6.3370 5.9067 3.3478 17 6 7.8765 7.3272 2.9351 18 1 8.1237 7.8415 2.0182 19 6 8.0653 7.9531 4.1491 20 7 7.7645 7.3266 5.2657 21 14 8.7482 9.6908 4.2078 22 1 7.6281 10.6647 4.1610 23 1 9.5154 9.8789 5.4652 24 1 9.6439 9.9102 3.0438 25 6 7.2193 5.4670 1.4315 26 6 4.3182 2.3740 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.7819 -0.9773 0.0014 32 1 6.2412 -0.9663 0.0031 33 1 7.4665 1.1672 -0.0064 34 1 5.8706 4.4306 -0.5139 35 1 7.4087 3.5348 -0.5120 36 1 8.5923 3.2046 1.6026 37 1 7.2135 2.1486 1.9912 38 1 6.7437 3.4952 4.0146 39 1 8.4103 2.8688 4.0475 40 1 8.3053 5.2791 4.6959 41 1 9.2591 5.0298 3.2125 42 1 7.8976 7.7669 6.1197 43 1 6.5424 6.1283 0.8908 44 1 8.2054 5.4992 0.9681 45 1 3.7817 3.3113 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:56 Heat of formation + Delta-G solvation = -36.740239 kcal Electronic energy + Delta-G solvation = -24310.153161 eV Core-core repulsion = 20904.896546 eV Total energy + Delta-G solvation = -3405.256615 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29522 -40.16349 -38.98626 -35.91211 -35.63648 -33.95202 -32.32142 -31.88663 -31.50131 -28.03841 -27.06955 -26.89624 -24.33623 -23.76833 -23.32118 -22.28186 -21.20144 -20.34848 -18.89859 -18.37494 -17.31371 -16.93941 -16.82884 -16.42501 -16.24580 -16.06910 -15.76876 -15.27045 -14.97453 -14.76189 -14.64138 -14.41222 -14.19290 -14.02807 -13.65448 -13.42271 -13.20356 -13.10883 -12.88541 -12.83096 -12.54851 -12.52789 -12.50242 -11.94958 -11.82991 -11.71269 -11.39292 -11.12672 -10.87557 -10.67094 -10.38893 -10.28393 -9.83415 -9.77550 -9.10403 -8.08258 -6.22767 -0.12866 0.41173 1.40575 1.41230 1.51406 1.81512 2.20038 2.42296 2.80642 3.18498 3.29835 3.70567 3.74353 3.96823 4.14162 4.19937 4.22566 4.32451 4.36517 4.41706 4.45538 4.58717 4.60906 4.66183 4.70422 4.75693 4.89136 4.91415 4.95643 4.97435 5.05477 5.10353 5.17929 5.32348 5.37325 5.38577 5.43905 5.51099 5.62692 5.63528 5.93900 5.97082 6.12822 6.21053 6.34235 6.45437 6.49493 6.90063 7.17320 7.45081 8.96422 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.003042 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.257539 B = 9201.510939 C = 9815.122563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.551 3.449 4 O -0.588 6.588 5 C -0.155 4.155 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.087 4.087 9 C -0.087 4.087 10 C 0.092 3.908 11 N -0.549 5.549 12 C 0.067 3.933 13 C -0.111 4.111 14 C -0.103 4.103 15 C 0.053 3.947 16 H -0.010 1.010 17 C -0.536 4.536 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 0.956 3.044 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.267 1.267 25 C 0.082 3.918 26 C -0.062 4.062 27 H 0.119 0.881 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.419 0.581 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.026 0.974 42 H 0.260 0.740 43 H 0.053 0.947 44 H 0.022 0.978 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 -22.894 -12.416 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.340 3.660 4 O -0.469 6.469 5 C -0.159 4.159 6 C -0.095 4.095 7 C -0.136 4.136 8 C -0.106 4.106 9 C -0.088 4.088 10 C -0.035 4.035 11 N -0.273 5.273 12 C -0.061 4.061 13 C -0.149 4.149 14 C -0.141 4.141 15 C 0.034 3.966 16 H 0.009 0.991 17 C -0.575 4.575 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.045 4.045 26 C -0.082 4.082 27 H 0.137 0.863 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.257 0.743 31 H 0.181 0.819 32 H 0.185 0.815 33 H 0.160 0.840 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.040 0.960 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.890 -22.155 -11.988 26.115 hybrid contribution 1.011 1.394 0.071 1.723 sum -5.880 -20.760 -11.917 24.649 Atomic orbital electron populations 1.21726 0.78281 1.04638 1.01446 1.45605 1.08550 1.08164 1.74482 1.18670 0.87967 0.83980 0.75431 1.90766 1.70968 1.33282 1.51927 1.19901 0.92046 0.95287 1.08622 1.21602 0.95042 0.96630 0.96246 1.21469 0.93871 0.98896 0.99412 1.21580 1.01147 0.91671 0.96169 1.19715 0.92936 0.95380 1.00745 1.21048 0.98735 0.94306 0.89416 1.61907 1.47937 1.02488 1.14980 1.22083 0.93782 0.96232 0.93958 1.21588 1.00168 0.97009 0.96130 1.21450 0.97074 0.93663 1.01933 1.18581 0.94051 0.93237 0.90751 0.99146 1.21525 1.43035 1.00414 0.92493 0.92965 1.25748 0.95827 1.01638 0.95407 1.70051 1.49238 1.38469 0.97791 0.85598 0.78463 0.80214 0.77618 1.20360 1.20742 1.19141 1.21981 0.96191 0.87855 0.98468 1.21053 0.93946 0.97527 0.95700 0.86286 0.93476 0.93067 0.74280 0.81883 0.81534 0.84007 0.90788 0.92657 0.94864 0.89361 0.93893 0.90937 0.92477 0.95483 0.93083 0.92864 0.95990 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.70 127.77 1.37 2.44 16 2 N -0.72 -11.07 5.66 -487.48 -2.76 -13.83 16 3 C 0.55 14.28 7.77 86.79 0.67 14.96 16 4 O -0.59 -21.28 16.35 -3.88 -0.06 -21.34 16 5 C -0.16 -3.70 5.87 -20.09 -0.12 -3.82 16 6 C -0.08 -1.13 9.54 22.52 0.21 -0.91 16 7 C -0.12 -1.64 10.03 22.23 0.22 -1.42 16 8 C -0.09 -1.66 7.88 22.33 0.18 -1.49 16 9 C -0.09 -2.28 4.88 -19.90 -0.10 -2.38 16 10 C 0.09 2.74 5.12 85.56 0.44 3.18 16 11 N -0.55 -20.48 4.65 -900.93 -4.19 -24.66 16 12 C 0.07 2.24 5.17 86.32 0.45 2.68 16 13 C -0.11 -4.38 6.09 30.64 0.19 -4.20 16 14 C -0.10 -5.06 5.02 30.67 0.15 -4.91 16 15 C 0.05 2.79 2.27 -11.49 -0.03 2.76 16 16 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 17 C -0.54 -30.64 8.56 25.60 0.22 -30.42 16 18 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 19 C 0.01 0.71 5.30 84.65 0.45 1.16 16 20 N -0.92 -54.71 11.35 21.45 0.24 -54.47 16 21 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 C 0.08 3.62 4.68 86.33 0.40 4.02 16 26 C -0.06 -1.83 9.24 22.53 0.21 -1.62 16 27 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.42 3.05 6.86 -92.71 -0.64 2.41 16 31 H 0.16 0.93 6.41 -2.91 -0.02 0.91 16 32 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 33 H 0.14 2.22 7.96 -2.91 -0.02 2.20 16 34 H 0.07 2.28 7.92 -2.39 -0.02 2.26 16 35 H 0.06 1.46 8.06 -2.39 -0.02 1.44 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 2.50 5.77 -2.39 -0.01 2.48 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.06 3.18 6.15 -2.39 -0.01 3.16 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 43 H 0.05 2.36 8.01 -2.39 -0.02 2.34 16 44 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.10 3.64 7.65 -2.91 -0.02 3.62 16 Total: -1.00 -76.04 359.20 0.52 -75.51 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.34 Total: 11.92 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 4.92 Total: -19.96 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -6.70 Total: -92.96 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -76.04 0.52 -75.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.772 kcal (2) G-P(sol) polarization free energy of solvation -76.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds