Wall clock time and date at job start Tue Mar 31 2020 08:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00094 * 2 1 4 4 N 1.46498 * 109.46756 * 125.00323 * 3 2 1 5 5 C 1.36735 * 127.13466 * 90.00283 * 4 3 2 6 6 C 1.50699 * 126.34780 * 359.97438 * 5 4 3 7 7 C 1.53003 * 117.49568 * 188.72028 * 6 5 4 8 8 C 1.53003 * 117.49887 * 120.06628 * 6 5 4 9 9 N 1.30294 * 107.30568 * 179.97438 * 5 4 3 10 10 N 1.28530 * 110.05622 * 0.02562 * 9 5 4 11 11 C 1.31221 * 109.85675 * 359.97438 * 10 9 5 12 12 N 1.38582 * 126.47333 * 179.97438 * 11 10 9 13 13 C 1.46846 * 111.00338 * 236.04578 * 12 11 10 14 14 C 1.53036 * 109.52289 * 174.15973 * 13 12 11 15 15 C 1.53111 * 109.27816 * 59.18524 * 14 13 12 16 16 C 1.53122 * 109.16091 * 302.34382 * 15 14 13 17 17 H 1.08998 * 109.50172 * 297.71420 * 16 15 14 18 18 C 1.50700 * 109.50581 * 177.63690 * 16 15 14 19 19 H 1.08002 * 119.99951 * 240.00114 * 18 16 15 20 20 C 1.37876 * 119.99821 * 59.99707 * 18 16 15 21 21 N 1.31511 * 120.00485 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99400 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47298 * 90.00425 * 22 20 18 24 24 H 1.48503 * 109.46727 * 209.99523 * 22 20 18 25 25 H 1.48496 * 109.47369 * 329.99922 * 22 20 18 26 26 C 1.46843 * 110.99625 * 111.83665 * 12 11 10 27 27 H 1.08000 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00140 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99715 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.46700 * 5.00408 * 3 2 1 31 31 H 1.08999 * 109.47244 * 245.00032 * 3 2 1 32 32 H 1.09000 * 115.55138 * 334.38871 * 6 5 4 33 33 H 1.08998 * 117.50580 * 0.02562 * 7 6 5 34 34 H 1.09005 * 117.49561 * 145.02415 * 7 6 5 35 35 H 1.08999 * 117.49756 * 214.97641 * 8 6 5 36 36 H 1.09001 * 117.49861 * 359.96664 * 8 6 5 37 37 H 1.08998 * 109.46254 * 294.18368 * 13 12 11 38 38 H 1.09002 * 109.45774 * 54.14258 * 13 12 11 39 39 H 1.09000 * 109.49860 * 179.12292 * 14 13 12 40 40 H 1.08990 * 109.50417 * 299.23967 * 14 13 12 41 41 H 1.09007 * 109.52674 * 62.24424 * 15 14 13 42 42 H 1.09001 * 109.52455 * 182.43688 * 15 14 13 43 43 H 0.96997 * 120.00206 * 180.02562 * 21 20 18 44 44 H 1.08991 * 109.46801 * 305.85706 * 26 12 11 45 45 H 1.09003 * 109.46200 * 65.82885 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.2913 0.9003 1.1436 6 6 5.0439 0.3004 -0.0160 7 6 6.4212 -0.3010 0.2712 8 6 6.3071 1.0232 -0.4881 9 7 4.7562 1.1042 2.3435 10 7 3.8476 1.6304 3.0848 11 6 2.7453 1.7924 2.3916 12 7 1.5537 2.3291 2.8524 13 6 0.4406 1.3938 2.6461 14 6 -0.8264 1.9556 3.2951 15 6 -1.1546 3.3143 2.6702 16 6 0.0395 4.2546 2.8563 17 1 0.2159 4.4125 3.9202 18 6 -0.2526 5.5761 2.1932 19 1 0.3855 5.9344 1.3990 20 6 -1.3344 6.3275 2.6006 21 7 -2.1112 5.8915 3.5680 22 14 -1.6967 7.9652 1.7781 23 1 -2.5994 7.7481 0.6191 24 1 -2.3522 8.8741 2.7525 25 1 -0.4267 8.5752 1.3090 26 6 1.2815 3.6262 2.2202 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1315 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 4.4300 -0.1869 -0.7734 33 1 6.7828 -0.2631 1.2988 34 1 6.7135 -1.1837 -0.2977 35 1 6.5243 1.0111 -1.5562 36 1 6.5934 1.9329 0.0395 37 1 0.2725 1.2594 1.5776 38 1 0.6851 0.4329 3.0988 39 1 -1.6560 1.2684 3.1283 40 1 -0.6636 2.0772 4.3658 41 1 -1.3557 3.1871 1.6064 42 1 -2.0316 3.7380 3.1595 43 1 -2.8724 6.4200 3.8543 44 1 2.1365 4.2867 2.3634 45 1 1.1093 3.4813 1.1536 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597285558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:12 Heat of formation + Delta-G solvation = 123.762644 kcal Electronic energy + Delta-G solvation = -25672.712426 eV Core-core repulsion = 22306.708489 eV Total energy + Delta-G solvation = -3366.003937 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.12741 -40.21819 -38.07557 -37.21859 -35.60107 -34.11264 -33.36160 -31.86235 -30.31669 -27.97534 -27.01622 -25.50614 -24.91603 -23.38888 -23.26533 -22.21958 -21.70506 -20.78799 -20.50592 -18.77911 -18.15192 -17.33838 -17.24913 -16.83019 -16.43868 -16.27346 -15.61844 -15.45602 -15.21134 -14.76329 -14.53640 -14.47060 -14.25548 -13.65903 -13.43803 -13.30870 -12.86700 -12.77272 -12.66706 -12.63908 -12.56810 -12.35247 -12.04260 -11.96285 -11.85497 -11.64074 -11.51431 -11.35402 -11.14044 -11.07926 -10.78868 -10.52255 -10.42246 -9.91686 -9.66679 -8.10789 -6.25534 0.59574 0.87840 1.41011 1.43492 1.52432 1.58976 1.69803 2.34539 2.49661 2.93280 3.17120 3.25785 3.45089 3.68536 3.75140 3.87823 3.96418 4.02281 4.05786 4.10374 4.16166 4.29633 4.42660 4.43262 4.51238 4.68776 4.73000 4.77049 4.80438 4.84043 4.89854 4.93764 4.98852 5.04711 5.15378 5.26645 5.30430 5.40180 5.47006 5.51849 5.58353 5.61022 5.74531 5.96320 6.11497 6.27605 6.32858 6.84076 7.42822 7.72665 8.94101 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.004174 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.603932 B = 6706.603350 C = 7101.620346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.194 4.194 3 C 0.118 3.882 4 N -0.487 5.487 5 C 0.217 3.783 6 C -0.098 4.098 7 C -0.142 4.142 8 C -0.150 4.150 9 N -0.328 5.328 10 N -0.319 5.319 11 C 0.351 3.649 12 N -0.461 5.461 13 C 0.052 3.948 14 C -0.110 4.110 15 C -0.100 4.100 16 C 0.056 3.944 17 H -0.005 1.005 18 C -0.537 4.537 19 H 0.052 0.948 20 C 0.021 3.979 21 N -0.911 5.911 22 Si 0.954 3.046 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.089 3.911 27 H 0.100 0.900 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.262 0.738 44 H 0.044 0.956 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -15.301 -14.130 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.212 4.212 3 C -0.003 4.003 4 N -0.183 5.183 5 C -0.051 4.051 6 C -0.118 4.118 7 C -0.180 4.180 8 C -0.188 4.188 9 N -0.168 5.168 10 N -0.160 5.160 11 C -0.005 4.005 12 N -0.186 5.186 13 C -0.073 4.073 14 C -0.148 4.148 15 C -0.138 4.138 16 C 0.037 3.963 17 H 0.014 0.986 18 C -0.576 4.576 19 H 0.070 0.930 20 C -0.179 4.179 21 N -0.550 5.550 22 Si 0.779 3.221 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.038 4.038 27 H 0.118 0.882 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.107 0.893 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.312 -15.110 -12.309 21.188 hybrid contribution -1.359 1.266 -1.320 2.279 sum 6.953 -13.844 -13.630 20.634 Atomic orbital electron populations 1.24250 0.95495 1.03745 0.94813 1.23001 0.96481 0.97171 1.04592 1.21481 0.92144 0.98479 0.88198 1.47618 1.12122 1.46892 1.11642 1.24437 0.82940 1.00735 0.97031 1.20416 0.90518 1.06245 0.94631 1.23088 0.94610 0.98072 1.02240 1.23145 0.96939 0.96311 1.02396 1.73973 1.23685 1.17794 1.01299 1.74397 0.97748 1.18111 1.25732 1.23241 0.94812 1.00600 0.81865 1.59069 0.99113 1.04499 1.55893 1.22741 0.89172 0.93585 1.01845 1.21623 0.95770 0.97683 0.99691 1.21463 1.00691 0.93208 0.98481 1.18594 0.89941 0.93215 0.94548 0.98647 1.21361 1.11790 1.04737 1.19693 0.92984 1.25645 0.95888 1.00967 0.95397 1.70012 1.16898 1.39184 1.28887 0.85627 0.78289 0.79746 0.78412 1.19528 1.21118 1.19732 1.22191 0.99422 0.86412 0.95730 0.88163 0.85100 0.85249 0.89276 0.84970 0.82925 0.89557 0.84738 0.84646 0.90449 0.90398 0.91177 0.89351 0.93454 0.94139 0.91555 0.92868 0.93774 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 12.28 67.78 0.83 -1.48 16 2 C -0.19 -3.30 9.08 25.65 0.23 -3.07 16 3 C 0.12 2.51 5.59 85.63 0.48 2.99 16 4 N -0.49 -14.32 2.79 -518.92 -1.45 -15.77 16 5 C 0.22 6.27 7.59 137.64 1.04 7.31 16 6 C -0.10 -1.73 5.87 -11.54 -0.07 -1.79 16 7 C -0.14 -2.18 10.15 30.62 0.31 -1.87 16 8 C -0.15 -2.26 10.24 30.62 0.31 -1.94 16 9 N -0.33 -12.28 11.79 -49.54 -0.58 -12.87 16 10 N -0.32 -13.71 12.23 -58.00 -0.71 -14.42 16 11 C 0.35 13.45 6.65 260.11 1.73 15.18 16 12 N -0.46 -18.41 4.70 -706.16 -3.32 -21.73 16 13 C 0.05 1.74 4.80 86.33 0.41 2.15 16 14 C -0.11 -3.97 6.09 30.64 0.19 -3.78 16 15 C -0.10 -4.44 5.02 30.67 0.15 -4.28 16 16 C 0.06 2.80 2.26 -11.49 -0.03 2.77 16 17 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 18 C -0.54 -28.92 8.57 25.60 0.22 -28.70 16 19 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 20 C 0.02 1.11 5.30 84.65 0.45 1.56 16 21 N -0.91 -51.31 11.35 21.45 0.24 -51.07 16 22 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 C 0.09 3.83 4.48 86.33 0.39 4.22 16 27 H 0.10 1.82 7.07 -2.91 -0.02 1.80 16 28 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 30 H 0.09 2.20 4.64 -2.39 -0.01 2.19 16 31 H 0.13 1.99 7.93 -2.39 -0.02 1.97 16 32 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.78 7.92 -2.39 -0.02 1.76 16 34 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 2.19 1.98 -2.39 0.00 2.18 16 38 H 0.07 2.24 8.10 -2.39 -0.02 2.22 16 39 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.07 3.37 6.15 -2.39 -0.01 3.35 16 43 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.04 2.07 8.10 -2.39 -0.02 2.05 16 45 H 0.04 1.67 5.74 -2.39 -0.01 1.65 16 Total: -1.00 -69.94 352.63 3.85 -66.09 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.98 Total: 15.98 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 6.66 Total: -10.73 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -5.82 Total: -115.85 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -69.94 3.85 -66.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597285558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.853 kcal (2) G-P(sol) polarization free energy of solvation -69.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds