Wall clock time and date at job start Tue Mar 31 2020 07:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 114.00116 * 2 1 4 4 C 1.52996 * 109.47167 * 180.02562 * 3 2 1 5 5 S 1.81393 * 109.46963 * 180.02562 * 4 3 2 6 6 C 1.81401 * 103.00117 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47356 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.47097 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47232 * 179.97438 * 8 7 6 10 10 C 1.46954 * 111.00136 * 170.00079 * 9 8 7 11 11 C 1.53050 * 109.36493 * 183.19039 * 10 9 8 12 12 N 1.46960 * 109.36183 * 301.59865 * 11 10 9 13 13 C 1.46899 * 110.99909 * 183.18613 * 12 11 10 14 14 C 1.50702 * 109.47509 * 169.99961 * 13 12 11 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.46962 * 110.88081 * 59.32313 * 12 11 10 23 23 C 1.46961 * 110.99813 * 293.80558 * 9 8 7 24 24 H 1.08998 * 109.46679 * 59.99402 * 1 2 3 25 25 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46545 * 299.99488 * 1 2 3 27 27 H 1.09001 * 109.46605 * 60.00073 * 3 2 1 28 28 H 1.08998 * 109.46980 * 300.00537 * 3 2 1 29 29 H 1.08992 * 109.47086 * 59.99960 * 4 3 2 30 30 H 1.09006 * 109.47134 * 300.00212 * 4 3 2 31 31 H 1.09008 * 109.47121 * 59.99770 * 6 5 4 32 32 H 1.09004 * 109.47064 * 300.00366 * 6 5 4 33 33 H 1.09001 * 109.47123 * 60.00336 * 7 6 5 34 34 H 1.08993 * 109.47306 * 299.99882 * 7 6 5 35 35 H 1.09001 * 109.46671 * 60.00289 * 8 7 6 36 36 H 1.08993 * 109.47135 * 300.00218 * 8 7 6 37 37 H 1.09002 * 109.48561 * 63.22583 * 10 9 8 38 38 H 1.08995 * 109.49120 * 303.15742 * 10 9 8 39 39 H 1.08996 * 109.48853 * 181.63309 * 11 10 9 40 40 H 1.08996 * 109.49241 * 61.56585 * 11 10 9 41 41 H 1.09009 * 109.47165 * 50.00381 * 13 12 11 42 42 H 1.08998 * 109.47687 * 290.00832 * 13 12 11 43 43 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 44 44 H 1.09002 * 109.48757 * 60.64076 * 22 12 11 45 45 H 1.09004 * 109.48878 * 180.70798 * 22 12 11 46 46 H 1.08998 * 109.48972 * 296.77446 * 23 9 8 47 47 H 1.08996 * 109.49248 * 56.84241 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 16 4.2733 2.8418 0.0001 6 6 6.0540 2.4957 0.0000 7 6 6.8299 3.8144 0.0000 8 6 8.3318 3.5224 0.0006 9 7 9.0768 4.7885 -0.0001 10 6 10.5083 4.5574 0.2386 11 6 11.2346 5.9027 0.3096 12 7 11.0248 6.6365 -0.9462 13 6 11.7696 7.9027 -0.9468 14 6 11.7327 8.5067 -2.3270 15 1 11.2079 8.0007 -3.1239 16 6 12.3687 9.7050 -2.5724 17 7 13.0074 10.3214 -1.6019 18 14 12.3293 10.4499 -4.2850 19 1 13.0873 11.7268 -4.2870 20 1 12.9478 9.5055 -5.2499 21 1 10.9214 10.7093 -4.6797 22 6 9.5932 6.8677 -1.1849 23 6 8.8669 5.5224 -1.2559 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8567 0.6439 -0.8908 30 1 3.8575 0.6435 0.8891 31 1 6.3127 1.9223 -0.8902 32 1 6.3126 1.9215 0.8898 33 1 6.5713 4.3881 0.8900 34 1 6.5713 4.3881 -0.8899 35 1 8.5906 2.9485 -0.8893 36 1 8.5901 2.9489 0.8907 37 1 10.9216 3.9635 -0.5766 38 1 10.6385 4.0238 1.1801 39 1 12.3010 5.7328 0.4577 40 1 10.8399 6.4856 1.1417 41 1 12.8045 7.7156 -0.6598 42 1 11.3146 8.5924 -0.2360 43 1 13.0275 9.9348 -0.7124 44 1 9.1798 7.4615 -0.3697 45 1 9.4630 7.4014 -2.1264 46 1 9.2616 4.9395 -2.0881 47 1 7.8004 5.6922 -1.4040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618752575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:12 Heat of formation + Delta-G solvation = -48.708625 kcal Electronic energy + Delta-G solvation = -21903.841607 eV Core-core repulsion = 18633.509954 eV Total energy + Delta-G solvation = -3270.331652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.177 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.95277 -38.40681 -35.95157 -33.55569 -32.25660 -32.07394 -30.50129 -28.23348 -26.97435 -25.81964 -24.15342 -23.37259 -23.20209 -21.70979 -21.01782 -19.28588 -17.27262 -16.79193 -16.69609 -16.55319 -15.78009 -15.68468 -15.41116 -14.73453 -14.49609 -14.41614 -14.15126 -13.97749 -13.73055 -13.57596 -13.35437 -12.80106 -12.54331 -12.30480 -12.14096 -11.96661 -11.81730 -11.66121 -11.55029 -11.16485 -10.98690 -10.90596 -10.77805 -10.60003 -10.36307 -10.31514 -10.22148 -10.10357 -9.92949 -8.66269 -8.36592 -8.20403 -8.04079 -7.31759 -6.35676 -4.04458 1.10394 2.17665 3.40512 3.45275 3.47642 3.66177 3.94484 4.38016 4.42599 4.52975 4.57578 4.74304 4.84411 4.84638 4.85364 4.87451 4.97389 5.11682 5.17059 5.19579 5.25491 5.29631 5.30610 5.39824 5.45936 5.52135 5.67749 5.76128 5.80724 5.90403 5.97013 6.05237 6.14706 6.34435 6.51824 6.56647 6.62801 6.98478 7.08502 7.18296 7.25016 7.80753 8.00253 8.33446 8.59154 8.88230 9.66389 11.03490 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.001977 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.435710 B =14162.628969 C =14918.525545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.078 3.922 4 C -0.093 4.093 5 S -0.246 6.246 6 C -0.079 4.079 7 C -0.101 4.101 8 C 0.063 3.937 9 N -0.540 5.540 10 C 0.063 3.937 11 C 0.055 3.945 12 N -0.532 5.532 13 C 0.183 3.817 14 C -0.588 4.588 15 H 0.056 0.944 16 C 0.014 3.986 17 N -0.914 5.914 18 Si 1.072 2.928 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.068 3.932 23 C 0.056 3.944 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.020 0.980 42 H -0.019 1.019 43 H 0.266 0.734 44 H 0.028 0.972 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.465 -20.378 4.816 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.001 3.999 4 C -0.241 4.241 5 S -0.019 6.019 6 C -0.227 4.227 7 C -0.140 4.140 8 C -0.068 4.068 9 N -0.265 5.265 10 C -0.065 4.065 11 C -0.075 4.075 12 N -0.257 5.257 13 C 0.057 3.943 14 C -0.627 4.627 15 H 0.074 0.926 16 C -0.190 4.190 17 N -0.551 5.551 18 Si 0.901 3.099 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.215 1.215 22 C -0.061 4.061 23 C -0.072 4.072 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.038 0.962 42 H -0.001 1.001 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.106 0.894 46 H 0.057 0.943 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.349 -18.272 3.916 27.628 hybrid contribution -0.092 -2.362 0.987 2.562 sum -20.441 -20.634 4.903 29.456 Atomic orbital electron populations 1.22774 0.80339 1.03009 1.00314 1.87856 1.20220 1.27501 1.95552 1.22106 0.91177 0.85022 1.01614 1.23200 0.97381 0.97339 1.06180 1.86901 1.05510 1.11357 1.98177 1.23364 0.92084 1.02182 1.05118 1.21330 0.93603 0.94736 1.04360 1.22008 0.92647 0.91370 1.00726 1.62137 1.09482 1.19309 1.35554 1.22130 0.86835 0.97496 1.00071 1.22093 0.99131 0.93862 0.92365 1.62199 1.08462 1.23889 1.31178 1.19807 0.92507 0.84370 0.97567 1.21960 1.37414 1.07990 0.95329 0.92554 1.25852 0.93386 0.94446 1.05299 1.70796 1.40564 1.40984 1.02709 0.83492 0.76289 0.76143 0.74023 1.20841 1.21413 1.21467 1.21994 0.88102 0.94257 1.01702 1.22303 0.99774 0.95591 0.89556 0.93786 0.89345 0.93798 0.92182 0.92171 0.89242 0.89253 0.89945 0.89827 0.90014 0.90626 0.94839 0.90917 0.94280 0.91130 0.91089 0.95158 0.96248 1.00124 0.92333 0.95382 0.89445 0.94307 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.28 10.70 -35.23 -0.38 -3.65 16 3 C 0.08 0.59 5.95 37.16 0.22 0.81 16 4 C -0.09 -0.71 6.31 37.16 0.23 -0.48 16 5 S -0.25 -2.29 21.74 -107.50 -2.34 -4.63 16 6 C -0.08 -0.66 5.94 37.16 0.22 -0.44 16 7 C -0.10 -1.02 5.16 -26.73 -0.14 -1.16 16 8 C 0.06 0.69 4.96 -3.82 -0.02 0.67 16 9 N -0.54 -7.88 4.71 -234.47 -1.10 -8.98 16 10 C 0.06 0.95 5.61 -3.77 -0.02 0.92 16 11 C 0.05 1.01 5.61 -3.77 -0.02 0.99 16 12 N -0.53 -11.80 4.70 -235.90 -1.11 -12.91 16 13 C 0.18 4.83 4.03 -4.98 -0.02 4.81 16 14 C -0.59 -16.86 8.47 -34.44 -0.29 -17.15 16 15 H 0.06 1.61 7.13 -52.49 -0.37 1.23 16 16 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 17 N -0.91 -28.10 13.65 55.43 0.76 -27.35 16 18 Si 1.07 25.47 29.90 -169.99 -5.08 20.38 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.07 1.37 5.43 -3.76 -0.02 1.35 16 23 C 0.06 0.89 5.41 -3.76 -0.02 0.87 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 32 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.83 6.49 -51.93 -0.34 0.50 16 35 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 39 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.54 7.90 -51.92 -0.41 0.13 16 42 H -0.02 -0.53 7.98 -51.93 -0.41 -0.94 16 43 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.89 6.79 -51.93 -0.35 1.54 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -31.70 382.19 -11.26 -42.95 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -8.90 Total: -4.36 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 1.14 Total: -7.21 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -1.46 Total: -49.24 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: -0.38 Total: -3.65 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.34 Total: -4.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.70 -11.26 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618752575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.755 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds