Wall clock time and date at job start Tue Mar 31 2020 07:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 114.00116 * 2 1 4 4 C 1.52996 * 109.47167 * 180.02562 * 3 2 1 5 5 S 1.81393 * 109.46963 * 180.02562 * 4 3 2 6 6 C 1.81401 * 103.00117 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47356 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.47097 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47232 * 179.97438 * 8 7 6 10 10 C 1.46954 * 111.00136 * 170.00079 * 9 8 7 11 11 C 1.53050 * 109.36493 * 183.19039 * 10 9 8 12 12 N 1.46960 * 109.36183 * 301.59865 * 11 10 9 13 13 C 1.46899 * 110.99909 * 183.18613 * 12 11 10 14 14 C 1.50702 * 109.47509 * 169.99961 * 13 12 11 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.46962 * 110.88081 * 59.32313 * 12 11 10 23 23 C 1.46961 * 110.99813 * 293.80558 * 9 8 7 24 24 H 1.08998 * 109.46679 * 59.99402 * 1 2 3 25 25 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46545 * 299.99488 * 1 2 3 27 27 H 1.09001 * 109.46605 * 60.00073 * 3 2 1 28 28 H 1.08998 * 109.46980 * 300.00537 * 3 2 1 29 29 H 1.08992 * 109.47086 * 59.99960 * 4 3 2 30 30 H 1.09006 * 109.47134 * 300.00212 * 4 3 2 31 31 H 1.09008 * 109.47121 * 59.99770 * 6 5 4 32 32 H 1.09004 * 109.47064 * 300.00366 * 6 5 4 33 33 H 1.09001 * 109.47123 * 60.00336 * 7 6 5 34 34 H 1.08993 * 109.47306 * 299.99882 * 7 6 5 35 35 H 1.09001 * 109.46671 * 60.00289 * 8 7 6 36 36 H 1.08993 * 109.47135 * 300.00218 * 8 7 6 37 37 H 1.09002 * 109.48561 * 63.22583 * 10 9 8 38 38 H 1.08995 * 109.49120 * 303.15742 * 10 9 8 39 39 H 1.08996 * 109.48853 * 181.63309 * 11 10 9 40 40 H 1.08996 * 109.49241 * 61.56585 * 11 10 9 41 41 H 1.09009 * 109.47165 * 50.00381 * 13 12 11 42 42 H 1.08998 * 109.47687 * 290.00832 * 13 12 11 43 43 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 44 44 H 1.09002 * 109.48757 * 60.64076 * 22 12 11 45 45 H 1.09004 * 109.48878 * 180.70798 * 22 12 11 46 46 H 1.08998 * 109.48972 * 296.77446 * 23 9 8 47 47 H 1.08996 * 109.49248 * 56.84241 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 16 4.2733 2.8418 0.0001 6 6 6.0540 2.4957 0.0000 7 6 6.8299 3.8144 0.0000 8 6 8.3318 3.5224 0.0006 9 7 9.0768 4.7885 -0.0001 10 6 10.5083 4.5574 0.2386 11 6 11.2346 5.9027 0.3096 12 7 11.0248 6.6365 -0.9462 13 6 11.7696 7.9027 -0.9468 14 6 11.7327 8.5067 -2.3270 15 1 11.2079 8.0007 -3.1239 16 6 12.3687 9.7050 -2.5724 17 7 13.0074 10.3214 -1.6019 18 14 12.3293 10.4499 -4.2850 19 1 13.0873 11.7268 -4.2870 20 1 12.9478 9.5055 -5.2499 21 1 10.9214 10.7093 -4.6797 22 6 9.5932 6.8677 -1.1849 23 6 8.8669 5.5224 -1.2559 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8567 0.6439 -0.8908 30 1 3.8575 0.6435 0.8891 31 1 6.3127 1.9223 -0.8902 32 1 6.3126 1.9215 0.8898 33 1 6.5713 4.3881 0.8900 34 1 6.5713 4.3881 -0.8899 35 1 8.5906 2.9485 -0.8893 36 1 8.5901 2.9489 0.8907 37 1 10.9216 3.9635 -0.5766 38 1 10.6385 4.0238 1.1801 39 1 12.3010 5.7328 0.4577 40 1 10.8399 6.4856 1.1417 41 1 12.8045 7.7156 -0.6598 42 1 11.3146 8.5924 -0.2360 43 1 13.0275 9.9348 -0.7124 44 1 9.1798 7.4615 -0.3697 45 1 9.4630 7.4014 -2.1264 46 1 9.2616 4.9395 -2.0881 47 1 7.8004 5.6922 -1.4040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618752575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:12 Heat of formation + Delta-G solvation = -70.298778 kcal Electronic energy + Delta-G solvation = -21904.777826 eV Core-core repulsion = 18633.509954 eV Total energy + Delta-G solvation = -3271.267871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.32950 -38.94400 -37.38166 -35.21263 -33.79186 -32.63084 -31.92495 -29.78695 -27.50550 -27.27234 -25.52216 -24.77715 -24.06121 -23.48034 -21.96216 -20.74174 -18.93870 -17.85607 -17.54559 -17.23865 -16.81098 -16.64985 -16.05731 -15.97456 -15.80190 -15.65680 -15.65259 -15.43060 -15.10717 -14.73924 -14.38264 -14.00203 -13.64938 -13.44239 -13.34057 -13.06401 -12.84908 -12.78974 -12.66437 -12.51503 -12.35740 -12.25822 -12.20881 -11.97191 -11.92961 -11.68316 -11.41808 -10.98417 -10.77919 -10.74405 -10.58866 -9.38522 -9.15344 -8.74545 -8.69953 -6.40709 0.46116 1.53121 1.53735 1.61857 1.81456 2.55375 2.84250 2.91884 3.10269 3.18096 3.81839 3.82355 3.87106 3.89809 3.99028 4.11251 4.14534 4.27596 4.31602 4.32489 4.43249 4.46134 4.46702 4.47365 4.53825 4.61954 4.65215 4.68899 4.70490 4.75686 4.79898 4.82775 4.87715 4.93165 5.03139 5.06149 5.12784 5.23025 5.73604 5.91936 5.99339 6.07406 6.12339 6.34977 6.39077 6.61166 7.40195 8.68835 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.001977 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.435710 B =14162.628969 C =14918.525545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.079 3.921 4 C -0.081 4.081 5 S -0.283 6.283 6 C -0.067 4.067 7 C -0.094 4.094 8 C 0.066 3.934 9 N -0.550 5.550 10 C 0.072 3.928 11 C 0.051 3.949 12 N -0.540 5.540 13 C 0.194 3.806 14 C -0.600 4.600 15 H 0.055 0.945 16 C -0.038 4.038 17 N -0.937 5.937 18 Si 1.122 2.878 19 H -0.283 1.283 20 H -0.269 1.269 21 H -0.268 1.268 22 C 0.069 3.931 23 C 0.070 3.930 24 H 0.050 0.950 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.039 0.961 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.021 0.979 41 H 0.000 1.000 42 H -0.046 1.046 43 H 0.252 0.748 44 H 0.013 0.987 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.708 -22.461 4.222 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.001 3.999 4 C -0.229 4.229 5 S -0.057 6.057 6 C -0.216 4.216 7 C -0.133 4.133 8 C -0.063 4.063 9 N -0.275 5.275 10 C -0.056 4.056 11 C -0.078 4.078 12 N -0.264 5.264 13 C 0.067 3.933 14 C -0.638 4.638 15 H 0.073 0.927 16 C -0.235 4.235 17 N -0.574 5.574 18 Si 0.943 3.057 19 H -0.209 1.209 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.059 4.059 23 C -0.058 4.058 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.018 0.982 42 H -0.029 1.029 43 H 0.062 0.938 44 H 0.031 0.969 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.619 -20.398 3.343 29.910 hybrid contribution 0.245 -1.764 1.248 2.175 sum -21.373 -22.162 4.591 31.130 Atomic orbital electron populations 1.22965 0.78933 1.04123 1.01045 1.87818 1.21858 1.27859 1.95680 1.22102 0.91101 0.84911 1.01748 1.23147 0.97368 0.95862 1.06535 1.87045 1.07030 1.13354 1.98276 1.23287 0.90677 1.01279 1.06343 1.21212 0.93266 0.95484 1.03331 1.22072 0.92467 0.89678 1.02078 1.62111 1.09482 1.21431 1.34490 1.22064 0.86728 0.94996 1.01787 1.22223 0.99977 0.95319 0.90245 1.62152 1.09310 1.21503 1.33477 1.19520 0.91838 0.85931 0.95979 1.22270 1.37081 1.08318 0.96120 0.92666 1.27465 0.92383 0.95129 1.08496 1.70931 1.42272 1.41579 1.02651 0.82872 0.77510 0.75621 0.69713 1.20855 1.19446 1.19343 1.21981 0.87295 0.96772 0.99892 1.22111 1.00114 0.93210 0.90391 0.93100 0.88120 0.93032 0.92008 0.92119 0.88932 0.88770 0.88911 0.88383 0.91066 0.91684 0.93987 0.88913 0.94231 0.87935 0.91012 0.96095 0.98207 1.02883 0.93846 0.96857 0.91595 0.94469 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.34 10.70 -148.98 -1.59 -7.94 16 3 C 0.08 1.08 5.95 71.98 0.43 1.51 16 4 C -0.08 -1.11 6.31 71.98 0.45 -0.65 16 5 S -0.28 -4.85 21.74 -56.49 -1.23 -6.08 16 6 C -0.07 -0.94 5.94 71.98 0.43 -0.51 16 7 C -0.09 -1.67 5.16 30.60 0.16 -1.51 16 8 C 0.07 1.25 4.96 86.31 0.43 1.68 16 9 N -0.55 -14.83 4.71 -895.72 -4.22 -19.04 16 10 C 0.07 2.01 5.61 86.31 0.48 2.50 16 11 C 0.05 1.88 5.61 86.31 0.48 2.36 16 12 N -0.54 -24.37 4.70 -900.25 -4.23 -28.60 16 13 C 0.19 10.68 4.03 85.56 0.34 11.02 16 14 C -0.60 -35.12 8.47 25.60 0.22 -34.91 16 15 H 0.06 3.19 7.13 -2.91 -0.02 3.17 16 16 C -0.04 -2.21 5.46 84.65 0.46 -1.75 16 17 N -0.94 -59.01 13.65 21.45 0.29 -58.72 16 18 Si 1.12 50.97 29.90 68.60 2.05 53.02 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 C 0.07 2.82 5.43 86.31 0.47 3.29 16 23 C 0.07 2.14 5.41 86.31 0.47 2.61 16 24 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.30 6.49 -2.39 -0.02 1.29 16 35 H 0.04 0.76 8.12 -2.39 -0.02 0.74 16 36 H 0.09 1.44 8.03 -2.39 -0.02 1.42 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 2.25 8.07 -2.39 -0.02 2.23 16 39 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.00 0.00 7.90 -2.38 -0.02 -0.02 16 42 H -0.05 -2.75 7.98 -2.39 -0.02 -2.77 16 43 H 0.25 16.18 7.22 -92.70 -0.67 15.51 16 44 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 2.93 6.79 -2.39 -0.02 2.91 16 46 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 47 H 0.09 2.51 6.34 -2.39 -0.02 2.49 16 Total: -1.00 -69.67 382.19 -1.86 -71.53 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.00 Total: 8.72 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 6.07 Total: -12.88 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -8.16 Total: -106.36 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -1.59 Total: -7.94 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -1.23 Total: -6.08 kcal Total: -69.67 -1.86 -71.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618752575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.229 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds