Wall clock time and date at job start Tue Mar 31 2020 07:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99830 * 2 1 4 4 H 1.48495 * 109.47044 * 270.00525 * 3 2 1 5 5 H 1.48498 * 109.46852 * 30.00229 * 3 2 1 6 6 H 1.48500 * 109.46805 * 150.00229 * 3 2 1 7 7 C 1.37880 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.53026 * 299.90148 * 9 7 2 11 11 C 1.53099 * 109.48672 * 179.81213 * 9 7 2 12 12 C 1.53126 * 109.15071 * 182.39686 * 11 9 7 13 13 C 1.53039 * 109.28009 * 57.65227 * 12 11 9 14 14 N 1.46854 * 109.52227 * 300.82107 * 13 12 11 15 15 C 1.38391 * 110.99804 * 185.83615 * 14 13 12 16 16 N 1.32496 * 119.18160 * 235.78622 * 15 14 13 17 17 C 1.32485 * 120.93378 * 180.02562 * 16 15 14 18 18 C 1.38124 * 119.29086 * 0.02562 * 17 16 15 19 19 C 1.39637 * 118.49148 * 0.02562 * 18 17 16 20 20 N 1.38538 * 120.48569 * 179.97438 * 19 18 17 21 21 C 1.48538 * 110.99502 * 62.60571 * 20 19 18 22 22 C 1.54940 * 103.22274 * 159.71594 * 21 20 19 23 23 C 1.54594 * 102.92387 * 322.58855 * 22 21 20 24 24 C 1.47903 * 110.99934 * 179.97438 * 20 19 18 25 25 N 1.32443 * 119.17636 * 55.52284 * 15 14 13 26 26 C 1.46847 * 111.19790 * 61.74204 * 14 13 12 27 27 H 0.96997 * 120.00425 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.52931 * 62.49434 * 11 9 7 29 29 H 1.09001 * 109.52470 * 302.29560 * 11 9 7 30 30 H 1.08994 * 109.50076 * 297.71308 * 12 11 9 31 31 H 1.09000 * 109.50123 * 177.59308 * 12 11 9 32 32 H 1.08993 * 109.46667 * 180.80353 * 13 12 11 33 33 H 1.09008 * 109.45973 * 60.82938 * 13 12 11 34 34 H 1.08008 * 120.35531 * 180.02562 * 17 16 15 35 35 H 1.08009 * 120.75483 * 179.97438 * 18 17 16 36 36 H 1.08997 * 110.66811 * 278.15341 * 21 20 19 37 37 H 1.08999 * 110.66817 * 41.28576 * 21 20 19 38 38 H 1.08997 * 110.72163 * 204.22373 * 22 21 20 39 39 H 1.09005 * 110.87460 * 81.01640 * 22 21 20 40 40 H 1.09004 * 110.30501 * 263.03345 * 23 22 21 41 41 H 1.08999 * 110.30939 * 140.87740 * 23 22 21 42 42 H 1.09005 * 109.92005 * 333.51474 * 24 20 19 43 43 H 1.08993 * 109.91845 * 94.80692 * 24 20 19 44 44 H 1.09002 * 109.46481 * 58.27472 * 26 14 13 45 45 H 1.08994 * 109.46283 * 178.25325 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5589 0.8903 11 6 2.2457 -3.6631 -0.0059 12 6 1.4731 -4.9838 -0.0664 13 6 0.5861 -4.9937 -1.3134 14 7 -0.3478 -3.8615 -1.2604 15 6 -1.2513 -3.9145 -2.3073 16 7 -1.3570 -2.8755 -3.1226 17 6 -2.2109 -2.8887 -4.1355 18 6 -3.0000 -4.0038 -4.3396 19 6 -2.8674 -5.0831 -3.4636 20 7 -3.6387 -6.2219 -3.6295 21 6 -3.3453 -6.8786 -4.9291 22 6 -3.8530 -8.3270 -4.7169 23 6 -3.4753 -8.6137 -3.2455 24 6 -3.3286 -7.2280 -2.5907 25 7 -1.9851 -5.0047 -2.4724 26 6 0.3705 -2.5808 -1.2495 27 1 -0.4850 0.8400 0.0004 28 1 2.8460 -3.6336 0.9033 29 1 2.8968 -3.5818 -0.8763 30 1 0.8512 -5.0826 0.8233 31 1 2.1766 -5.8150 -0.1136 32 1 0.0239 -5.9266 -1.3519 33 1 1.2097 -4.9085 -2.2034 34 1 -2.2891 -2.0367 -4.7947 35 1 -3.7043 -4.0398 -5.1577 36 1 -3.8925 -6.3936 -5.7374 37 1 -2.2740 -6.8721 -5.1302 38 1 -3.3417 -9.0171 -5.3879 39 1 -4.9326 -8.3845 -4.8562 40 1 -2.5316 -9.1570 -3.1962 41 1 -4.2659 -9.1821 -2.7558 42 1 -2.3074 -7.0917 -2.2347 43 1 -4.0295 -7.1336 -1.7614 44 1 0.9951 -2.5070 -2.1397 45 1 -0.3482 -1.7614 -1.2412 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853760180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:51 Heat of formation + Delta-G solvation = 75.494974 kcal Electronic energy + Delta-G solvation = -25263.764953 eV Core-core repulsion = 21895.667973 eV Total energy + Delta-G solvation = -3368.096980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07274 -39.14185 -37.71705 -33.96446 -33.66801 -32.47244 -31.16762 -29.73222 -29.33148 -28.85785 -25.10996 -24.39390 -23.94603 -22.29916 -21.52402 -20.92386 -20.79480 -18.76283 -17.70153 -17.18021 -16.34812 -15.97560 -15.48858 -15.14168 -14.90972 -14.47600 -14.10828 -14.03722 -13.70611 -13.53848 -13.36511 -12.86795 -12.63978 -12.54298 -12.31804 -12.19373 -11.84638 -11.59937 -11.41482 -10.97218 -10.83503 -10.78059 -10.73022 -10.46490 -10.38920 -10.21409 -10.18399 -9.90245 -9.50961 -9.08519 -8.92623 -8.69404 -8.60581 -8.32139 -7.65181 -5.96437 -4.03984 1.36462 1.47840 3.32798 3.39798 3.40531 3.42972 3.90277 4.12455 4.34308 4.44080 4.46084 4.69892 4.72436 5.09730 5.12126 5.21254 5.24732 5.36673 5.44442 5.48129 5.55740 5.56680 5.58342 5.61555 5.71837 5.74527 5.83263 5.90748 6.05953 6.06604 6.29366 6.37197 6.37885 6.49627 6.64646 6.74817 6.84443 6.97174 7.08233 7.15627 7.36917 7.42351 7.75475 7.93983 8.04511 8.15662 8.43764 8.71538 9.00090 9.61242 11.09109 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.003840 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.393021 B = 7289.092631 C = 8158.856570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.050 3.950 10 H 0.035 0.965 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.076 3.924 14 N -0.459 5.459 15 C 0.527 3.473 16 N -0.552 5.552 17 C 0.185 3.815 18 C -0.285 4.285 19 C 0.363 3.637 20 N -0.459 5.459 21 C 0.046 3.954 22 C -0.123 4.123 23 C -0.132 4.132 24 C 0.034 3.966 25 N -0.573 5.573 26 C 0.076 3.924 27 H 0.261 0.739 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.163 0.837 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.026 0.974 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 -15.307 -10.398 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.031 3.969 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.050 4.050 14 N -0.177 5.177 15 C 0.171 3.829 16 N -0.272 5.272 17 C 0.018 3.982 18 C -0.312 4.312 19 C 0.120 3.880 20 N -0.178 5.178 21 C -0.079 4.079 22 C -0.161 4.161 23 C -0.171 4.171 24 C -0.093 4.093 25 N -0.298 5.298 26 C -0.048 4.048 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.181 0.819 35 H 0.156 0.844 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.044 0.956 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.850 -15.046 -9.093 18.867 hybrid contribution 0.638 0.932 -1.267 1.697 sum -6.212 -14.113 -10.360 18.577 Atomic orbital electron populations 1.69863 1.05815 1.26561 1.49810 1.25006 0.94841 0.99129 0.94828 0.86606 0.79845 0.83550 0.78070 1.20690 1.21245 1.19952 1.21101 0.92875 0.90224 1.51371 0.92432 1.18779 0.92147 0.92032 0.93914 0.94731 1.21736 0.98620 0.94465 1.00431 1.21662 0.97768 0.98723 0.97301 1.22029 0.92721 0.92162 0.98132 1.58597 1.17726 1.08255 1.33096 1.21150 0.91625 0.83783 0.86338 1.68633 1.23406 1.29718 1.05487 1.22905 0.87480 0.95804 0.92000 1.22012 1.07689 0.96091 1.05434 1.19918 0.86323 0.92344 0.89401 1.61842 1.46694 1.04373 1.04908 1.23285 1.00061 0.94273 0.90327 1.22512 1.01945 0.95008 0.96667 1.22450 1.02052 0.96999 0.95569 1.22894 1.03617 0.88603 0.94209 1.67842 1.09431 1.28341 1.24169 1.22623 0.97661 0.86088 0.98468 0.92868 0.92846 0.93473 0.91409 0.92387 0.90630 0.94837 0.81939 0.84406 0.89122 0.92717 0.90548 0.90380 0.91198 0.90756 0.89664 0.89970 0.95556 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 11.33 55.43 0.63 -24.96 16 2 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.22 8.56 -34.44 -0.29 -14.52 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.05 1.27 2.26 -91.70 -0.21 1.07 16 10 H 0.03 0.97 8.14 -51.92 -0.42 0.55 16 11 C -0.11 -2.40 5.22 -26.62 -0.14 -2.54 16 12 C -0.12 -2.08 6.09 -26.65 -0.16 -2.24 16 13 C 0.08 1.42 5.33 -3.83 -0.02 1.40 16 14 N -0.46 -10.11 4.72 -175.44 -0.83 -10.94 16 15 C 0.53 11.07 7.18 -322.89 -2.32 8.75 16 16 N -0.55 -11.43 8.67 -14.02 -0.12 -11.55 16 17 C 0.18 2.98 11.28 -17.31 -0.20 2.78 16 18 C -0.29 -4.10 9.57 -39.10 -0.37 -4.48 16 19 C 0.36 5.74 6.21 -154.83 -0.96 4.78 16 20 N -0.46 -5.95 5.30 -169.10 -0.90 -6.85 16 21 C 0.05 0.45 6.08 -1.89 -0.01 0.44 16 22 C -0.12 -0.94 7.06 -24.87 -0.18 -1.11 16 23 C -0.13 -1.14 6.93 -25.40 -0.18 -1.32 16 24 C 0.03 0.41 6.36 -2.77 -0.02 0.39 16 25 N -0.57 -10.63 7.50 -13.17 -0.10 -10.73 16 26 C 0.08 1.90 3.68 -3.84 -0.01 1.89 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.31 7.54 -51.93 -0.39 0.91 16 33 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 35 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.57 7.99 -51.93 -0.42 0.15 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.21 6.52 -51.93 -0.34 0.87 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.12 3.45 5.63 -51.93 -0.29 3.16 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -30.96 351.16 -13.53 -44.49 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.32 Total: 1.90 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -5.16 Total: -3.02 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -1.32 Total: -65.02 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.96 -13.53 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853760180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.981 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds