Wall clock time and date at job start Tue Mar 31 2020 07:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99830 * 2 1 4 4 H 1.48495 * 109.47044 * 270.00525 * 3 2 1 5 5 H 1.48498 * 109.46852 * 30.00229 * 3 2 1 6 6 H 1.48500 * 109.46805 * 150.00229 * 3 2 1 7 7 C 1.37880 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.53026 * 299.90148 * 9 7 2 11 11 C 1.53099 * 109.48672 * 179.81213 * 9 7 2 12 12 C 1.53126 * 109.15071 * 182.39686 * 11 9 7 13 13 C 1.53039 * 109.28009 * 57.65227 * 12 11 9 14 14 N 1.46854 * 109.52227 * 300.82107 * 13 12 11 15 15 C 1.38391 * 110.99804 * 185.83615 * 14 13 12 16 16 N 1.32496 * 119.18160 * 235.78622 * 15 14 13 17 17 C 1.32485 * 120.93378 * 180.02562 * 16 15 14 18 18 C 1.38124 * 119.29086 * 0.02562 * 17 16 15 19 19 C 1.39637 * 118.49148 * 0.02562 * 18 17 16 20 20 N 1.38538 * 120.48569 * 179.97438 * 19 18 17 21 21 C 1.48538 * 110.99502 * 62.60571 * 20 19 18 22 22 C 1.54940 * 103.22274 * 159.71594 * 21 20 19 23 23 C 1.54594 * 102.92387 * 322.58855 * 22 21 20 24 24 C 1.47903 * 110.99934 * 179.97438 * 20 19 18 25 25 N 1.32443 * 119.17636 * 55.52284 * 15 14 13 26 26 C 1.46847 * 111.19790 * 61.74204 * 14 13 12 27 27 H 0.96997 * 120.00425 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.52931 * 62.49434 * 11 9 7 29 29 H 1.09001 * 109.52470 * 302.29560 * 11 9 7 30 30 H 1.08994 * 109.50076 * 297.71308 * 12 11 9 31 31 H 1.09000 * 109.50123 * 177.59308 * 12 11 9 32 32 H 1.08993 * 109.46667 * 180.80353 * 13 12 11 33 33 H 1.09008 * 109.45973 * 60.82938 * 13 12 11 34 34 H 1.08008 * 120.35531 * 180.02562 * 17 16 15 35 35 H 1.08009 * 120.75483 * 179.97438 * 18 17 16 36 36 H 1.08997 * 110.66811 * 278.15341 * 21 20 19 37 37 H 1.08999 * 110.66817 * 41.28576 * 21 20 19 38 38 H 1.08997 * 110.72163 * 204.22373 * 22 21 20 39 39 H 1.09005 * 110.87460 * 81.01640 * 22 21 20 40 40 H 1.09004 * 110.30501 * 263.03345 * 23 22 21 41 41 H 1.08999 * 110.30939 * 140.87740 * 23 22 21 42 42 H 1.09005 * 109.92005 * 333.51474 * 24 20 19 43 43 H 1.08993 * 109.91845 * 94.80692 * 24 20 19 44 44 H 1.09002 * 109.46481 * 58.27472 * 26 14 13 45 45 H 1.08994 * 109.46283 * 178.25325 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5589 0.8903 11 6 2.2457 -3.6631 -0.0059 12 6 1.4731 -4.9838 -0.0664 13 6 0.5861 -4.9937 -1.3134 14 7 -0.3478 -3.8615 -1.2604 15 6 -1.2513 -3.9145 -2.3073 16 7 -1.3570 -2.8755 -3.1226 17 6 -2.2109 -2.8887 -4.1355 18 6 -3.0000 -4.0038 -4.3396 19 6 -2.8674 -5.0831 -3.4636 20 7 -3.6387 -6.2219 -3.6295 21 6 -3.3453 -6.8786 -4.9291 22 6 -3.8530 -8.3270 -4.7169 23 6 -3.4753 -8.6137 -3.2455 24 6 -3.3286 -7.2280 -2.5907 25 7 -1.9851 -5.0047 -2.4724 26 6 0.3705 -2.5808 -1.2495 27 1 -0.4850 0.8400 0.0004 28 1 2.8460 -3.6336 0.9033 29 1 2.8968 -3.5818 -0.8763 30 1 0.8512 -5.0826 0.8233 31 1 2.1766 -5.8150 -0.1136 32 1 0.0239 -5.9266 -1.3519 33 1 1.2097 -4.9085 -2.2034 34 1 -2.2891 -2.0367 -4.7947 35 1 -3.7043 -4.0398 -5.1577 36 1 -3.8925 -6.3936 -5.7374 37 1 -2.2740 -6.8721 -5.1302 38 1 -3.3417 -9.0171 -5.3879 39 1 -4.9326 -8.3845 -4.8562 40 1 -2.5316 -9.1570 -3.1962 41 1 -4.2659 -9.1821 -2.7558 42 1 -2.3074 -7.0917 -2.2347 43 1 -4.0295 -7.1336 -1.7614 44 1 0.9951 -2.5070 -2.1397 45 1 -0.3482 -1.7614 -1.2412 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853760180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:50 Heat of formation + Delta-G solvation = 58.227442 kcal Electronic energy + Delta-G solvation = -25264.513730 eV Core-core repulsion = 21895.667973 eV Total energy + Delta-G solvation = -3368.845757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.38198 -40.36403 -39.13504 -35.66510 -34.92506 -34.23126 -32.41126 -31.50088 -30.50544 -29.82740 -27.06300 -25.95047 -25.21250 -23.58905 -23.12731 -22.10291 -21.67117 -20.49664 -19.09722 -18.52020 -18.13877 -17.06513 -16.89338 -16.42926 -16.33889 -16.19508 -15.52565 -15.30428 -15.02549 -14.94652 -14.55918 -14.42827 -14.15533 -13.95836 -13.61161 -13.45987 -13.17876 -12.87726 -12.61917 -12.34887 -12.30041 -12.18741 -12.17286 -11.91729 -11.82413 -11.78965 -11.52778 -11.42759 -11.10768 -10.90771 -10.87109 -10.46086 -10.10376 -9.83446 -9.14987 -8.08509 -6.24437 0.03675 0.20316 1.42057 1.42502 1.53179 2.14514 2.43900 2.66934 2.77206 3.19005 3.31089 3.60482 3.66468 3.88951 3.98373 4.05247 4.09916 4.14902 4.26900 4.30195 4.35695 4.47420 4.49644 4.51562 4.73098 4.75605 4.80821 4.86561 4.89339 4.95600 4.98825 5.00389 5.13581 5.15439 5.21173 5.23540 5.25980 5.33504 5.47413 5.59570 5.74905 5.85586 5.95977 6.02707 6.13822 6.37128 6.46619 6.87285 7.29208 7.44727 8.95632 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.003840 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.393021 B = 7289.092631 C = 8158.856570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.046 3.954 10 H -0.003 1.003 11 C -0.108 4.108 12 C -0.107 4.107 13 C 0.079 3.921 14 N -0.476 5.476 15 C 0.504 3.496 16 N -0.596 5.596 17 C 0.171 3.829 18 C -0.265 4.265 19 C 0.352 3.648 20 N -0.460 5.460 21 C 0.042 3.958 22 C -0.114 4.114 23 C -0.126 4.126 24 C 0.030 3.970 25 N -0.581 5.581 26 C 0.105 3.895 27 H 0.260 0.740 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.195 0.805 35 H 0.178 0.822 36 H 0.111 0.889 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.006 0.994 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -17.079 -12.240 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.027 3.973 10 H 0.015 0.985 11 C -0.146 4.146 12 C -0.145 4.145 13 C -0.047 4.047 14 N -0.195 5.195 15 C 0.147 3.853 16 N -0.318 5.318 17 C 0.007 3.993 18 C -0.291 4.291 19 C 0.110 3.890 20 N -0.179 5.179 21 C -0.083 4.083 22 C -0.152 4.152 23 C -0.164 4.164 24 C -0.097 4.097 25 N -0.307 5.307 26 C -0.021 4.021 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.211 0.789 35 H 0.195 0.805 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.024 0.976 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.313 -16.853 -10.972 21.398 hybrid contribution 0.632 1.406 -0.778 1.726 sum -6.681 -15.447 -11.749 20.525 Atomic orbital electron populations 1.70041 1.07338 1.27138 1.50615 1.25821 0.95606 1.02655 0.94444 0.85572 0.78787 0.79198 0.78200 1.20186 1.21005 1.18914 1.21486 0.93158 0.91582 1.51268 0.92288 1.18732 0.92672 0.93419 0.92456 0.98482 1.21617 0.97822 0.94381 1.00779 1.21628 0.97947 0.98264 0.96654 1.22103 0.92527 0.91663 0.98388 1.58571 1.18308 1.07656 1.34979 1.21107 0.92281 0.84947 0.86986 1.68559 1.25709 1.30347 1.07177 1.23491 0.86950 0.97563 0.91271 1.22388 1.06799 0.94517 1.05410 1.20439 0.85802 0.93952 0.88830 1.61947 1.45258 1.04019 1.06685 1.23495 1.00121 0.95618 0.89048 1.22539 1.02839 0.93787 0.96041 1.22437 1.03049 0.94741 0.96218 1.22911 1.01828 0.90663 0.94342 1.67846 1.10026 1.27356 1.25436 1.21972 0.96201 0.86897 0.97050 0.93110 0.92174 0.93305 0.91906 0.88250 0.89153 0.95076 0.78865 0.80459 0.87094 0.93470 0.88345 0.89265 0.90544 0.89353 0.91999 0.91034 0.97565 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.21 11.33 21.45 0.24 -54.97 16 2 C 0.01 0.81 5.30 84.66 0.45 1.26 16 3 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -30.47 8.56 25.60 0.22 -30.25 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.05 2.45 2.26 -11.50 -0.03 2.43 16 10 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 11 C -0.11 -4.57 5.22 30.67 0.16 -4.41 16 12 C -0.11 -3.75 6.09 30.65 0.19 -3.57 16 13 C 0.08 2.97 5.33 86.32 0.46 3.43 16 14 N -0.48 -21.91 4.72 -708.98 -3.34 -25.26 16 15 C 0.50 21.88 7.18 261.52 1.88 23.76 16 16 N -0.60 -25.53 8.67 -198.26 -1.72 -27.25 16 17 C 0.17 5.44 11.28 84.57 0.95 6.39 16 18 C -0.27 -7.13 9.57 22.58 0.22 -6.91 16 19 C 0.35 10.81 6.21 133.18 0.83 11.63 16 20 N -0.46 -11.08 5.30 -688.90 -3.65 -14.73 16 21 C 0.04 0.68 6.08 86.65 0.53 1.21 16 22 C -0.11 -1.31 7.06 31.80 0.22 -1.09 16 23 C -0.13 -1.85 6.93 31.46 0.22 -1.64 16 24 C 0.03 0.69 6.36 86.43 0.55 1.24 16 25 N -0.58 -21.84 7.50 -195.57 -1.47 -23.30 16 26 C 0.11 5.53 3.68 86.32 0.32 5.85 16 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.09 3.11 7.54 -2.39 -0.02 3.09 16 33 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.19 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 0.86 7.99 -2.39 -0.02 0.84 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.75 6.52 -2.38 -0.02 1.73 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.01 0.33 8.10 -2.39 -0.02 0.31 16 45 H 0.08 5.07 5.63 -2.39 -0.01 5.05 16 Total: -1.00 -71.70 351.16 0.21 -71.49 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.96 Total: 17.92 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 7.16 Total: 9.34 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -9.94 Total: -145.51 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -71.70 0.21 -71.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853760180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.715 kcal (2) G-P(sol) polarization free energy of solvation -71.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds