Wall clock time and date at job start Tue Mar 31 2020 07:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 119.99751 * 2 1 4 4 H 1.48504 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47056 * 300.00163 * 3 2 1 6 6 H 1.48498 * 109.47120 * 60.00090 * 3 2 1 7 7 C 1.40056 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99732 * 184.97028 * 7 2 1 9 9 C 1.41269 * 119.99952 * 4.96918 * 7 2 1 10 10 C 1.40716 * 120.15758 * 155.09810 * 9 7 2 11 11 N 1.31904 * 119.92736 * 179.67546 * 10 9 7 12 12 C 1.32150 * 120.27459 * 0.58297 * 11 10 9 13 13 C 1.39928 * 120.31990 * 359.43667 * 12 11 10 14 14 N 1.38823 * 119.96825 * 180.28122 * 13 12 11 15 15 C 1.46847 * 111.00005 * 235.98787 * 14 13 12 16 16 C 1.53028 * 109.53424 * 174.17949 * 15 14 13 17 17 C 1.53135 * 109.24722 * 59.22394 * 16 15 14 18 18 C 1.53108 * 109.15565 * 302.28801 * 17 16 15 19 19 C 1.46810 * 111.00379 * 111.70770 * 14 13 12 20 20 C 1.53112 * 109.47664 * 305.68129 * 19 14 13 21 21 C 1.53125 * 109.17756 * 62.44596 * 20 19 14 22 22 C 1.53036 * 109.27184 * 57.64403 * 21 20 19 23 23 N 1.46854 * 109.50519 * 300.78219 * 22 21 20 24 24 C 1.46847 * 111.21025 * 61.76471 * 23 22 21 25 25 N 1.32262 * 120.05981 * 0.25561 * 13 12 11 26 26 H 0.97003 * 119.99923 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.03366 * 359.97438 * 10 9 7 28 28 H 1.08006 * 119.84342 * 179.72120 * 12 11 10 29 29 H 1.08998 * 109.45688 * 294.19805 * 15 14 13 30 30 H 1.08994 * 109.46196 * 54.17104 * 15 14 13 31 31 H 1.09002 * 109.51124 * 179.15538 * 16 15 14 32 32 H 1.09002 * 109.51171 * 299.29729 * 16 15 14 33 33 H 1.09001 * 109.52212 * 62.18862 * 17 16 15 34 34 H 1.08995 * 109.52757 * 182.37851 * 17 16 15 35 35 H 1.09000 * 109.49535 * 177.57615 * 18 17 16 36 36 H 1.08995 * 109.49509 * 297.63686 * 18 17 16 37 37 H 1.08996 * 109.52311 * 182.35070 * 20 19 14 38 38 H 1.09000 * 109.52261 * 302.53539 * 20 19 14 39 39 H 1.08995 * 109.50532 * 177.58837 * 21 20 19 40 40 H 1.08999 * 109.49820 * 297.70650 * 21 20 19 41 41 H 1.09004 * 109.46509 * 60.78809 * 22 21 20 42 42 H 1.08997 * 109.46892 * 180.76666 * 22 21 20 43 43 H 1.00897 * 111.00029 * 185.86705 * 23 22 21 44 44 H 1.09000 * 109.46116 * 178.28868 * 24 23 22 45 45 H 1.08999 * 109.46138 * 58.32881 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8824 2.3965 -1.2125 6 1 1.8825 2.3964 1.2125 7 6 2.0077 -1.2129 -0.0005 8 1 3.0846 -1.2146 0.0805 9 6 1.3053 -2.4340 -0.1071 10 6 1.9462 -3.5755 -0.6232 11 7 1.2881 -4.7149 -0.7147 12 6 0.0246 -4.7869 -0.3341 13 6 -0.6236 -3.6585 0.1803 14 7 -1.9493 -3.7438 0.5833 15 6 -2.7764 -2.7510 -0.1144 16 6 -4.2482 -2.9686 0.2437 17 6 -4.4245 -2.8323 1.7587 18 6 -3.5173 -3.8447 2.4632 19 6 -2.0665 -3.6047 2.0400 20 6 -1.1606 -4.6313 2.7254 21 6 0.2962 -4.3474 2.3488 22 6 0.6542 -2.9169 2.7580 23 7 -0.2393 -1.9732 2.0741 24 6 -1.6397 -2.1954 2.4561 25 7 0.0258 -2.5109 0.2834 26 1 -0.4850 0.8401 0.0004 27 1 2.9774 -3.5198 -0.9396 28 1 -0.5090 -5.7223 -0.4163 29 1 -2.4733 -1.7487 0.1883 30 1 -2.6447 -2.8606 -1.1908 31 1 -4.8602 -2.2221 -0.2626 32 1 -4.5556 -3.9661 -0.0702 33 1 -4.1528 -1.8230 2.0678 34 1 -5.4635 -3.0281 2.0237 35 1 -3.6062 -3.7234 3.5427 36 1 -3.8153 -4.8555 2.1850 37 1 -1.2784 -4.5568 3.8064 38 1 -1.4329 -5.6343 2.3967 39 1 0.9496 -5.0487 2.8678 40 1 0.4223 -4.4603 1.2721 41 1 0.5402 -2.8083 3.8366 42 1 1.6867 -2.7068 2.4790 43 1 0.0371 -1.0194 2.2526 44 1 -2.2731 -1.4621 1.9569 45 1 -1.7428 -2.0888 3.5360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157472632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:17 Heat of formation + Delta-G solvation = 141.566979 kcal Electronic energy + Delta-G solvation = -28168.643541 eV Core-core repulsion = 24803.411658 eV Total energy + Delta-G solvation = -3365.231883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17185 -38.20072 -35.70614 -34.03628 -33.20536 -31.92781 -30.95130 -30.33182 -28.97908 -26.32335 -25.66490 -23.67511 -23.27010 -22.03970 -21.72945 -20.83338 -19.77743 -18.00562 -17.44543 -16.10863 -15.94638 -15.13236 -14.92203 -14.76365 -14.56665 -14.21131 -13.87803 -13.48411 -13.23235 -12.95553 -12.77308 -12.58693 -12.42944 -12.11056 -11.79113 -11.59465 -11.41852 -11.37176 -11.26448 -10.96171 -10.78762 -10.71985 -10.36926 -10.28506 -10.02424 -10.01490 -9.74145 -9.62467 -9.49484 -9.35821 -8.82953 -8.02085 -7.34631 -7.08621 -6.54722 -5.55960 -4.37802 2.58700 3.04026 3.07979 3.11484 3.40626 3.93796 4.54229 4.75374 4.95978 5.08321 5.24121 5.28768 5.48235 5.57035 5.66300 5.76926 5.84117 5.90288 5.94584 6.01512 6.08576 6.12191 6.17381 6.18744 6.25395 6.30054 6.32394 6.39087 6.47671 6.52828 6.55136 6.57147 6.65902 6.71066 6.90825 7.01516 7.02708 7.15113 7.19595 7.45275 7.72349 7.80054 7.93378 8.12378 8.28736 8.35940 8.70976 8.97603 9.46572 10.03412 10.31015 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.007786 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.001232 B = 3595.471179 C = 4158.427509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.080 3.920 3 Si 0.896 3.104 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.432 4.432 8 H 0.077 0.923 9 C 0.196 3.804 10 C -0.082 4.082 11 N -0.455 5.455 12 C -0.059 4.059 13 C 0.212 3.788 14 N -0.459 5.459 15 C 0.062 3.938 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.102 4.102 19 C 0.121 3.879 20 C -0.097 4.097 21 C -0.187 4.187 22 C 0.047 3.953 23 N -0.555 5.555 24 C 0.033 3.967 25 N -0.314 5.314 26 H 0.268 0.732 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.143 0.857 41 H 0.002 0.998 42 H 0.072 0.928 43 H 0.340 0.660 44 H 0.079 0.921 45 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 -0.886 5.350 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.465 4.465 8 H 0.095 0.905 9 C 0.070 3.930 10 C -0.245 4.245 11 N -0.168 5.168 12 C -0.222 4.222 13 C -0.028 4.028 14 N -0.182 5.182 15 C -0.066 4.066 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.141 4.141 19 C 0.031 3.969 20 C -0.135 4.135 21 C -0.224 4.224 22 C -0.083 4.083 23 N -0.186 5.186 24 C -0.097 4.097 25 N -0.040 5.040 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.159 0.841 41 H 0.020 0.980 42 H 0.090 0.910 43 H 0.163 0.837 44 H 0.098 0.902 45 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -7.172 -1.509 4.676 8.694 hybrid contribution 0.812 1.941 1.496 2.581 sum -6.360 0.431 6.172 8.873 Atomic orbital electron populations 1.70025 1.06736 1.27091 1.31643 1.25847 0.94744 1.00138 0.93544 0.86457 0.81064 0.82048 0.78287 1.18732 1.20147 1.20330 1.19291 0.94008 0.89214 1.43964 0.90457 1.19382 0.90743 0.92809 0.90091 1.23055 1.00285 0.90788 1.10420 1.67765 1.07497 1.27412 1.14164 1.22083 0.92339 0.98194 1.09579 1.20231 0.89405 0.93189 0.99976 1.60111 1.05800 1.48631 1.03660 1.21992 0.90684 0.95835 0.98079 1.21622 0.96933 1.01499 0.95345 1.21585 0.98608 0.99365 0.96097 1.21556 0.93843 0.99841 0.98821 1.20885 0.93929 0.93713 0.88398 1.21464 0.95340 0.98668 0.98008 1.23061 0.95085 0.95207 1.09079 1.22112 0.98324 0.94159 0.93687 1.61324 0.99842 1.07578 1.49870 1.22584 0.92884 0.98316 0.95957 1.70867 1.08796 1.22564 1.01758 0.92143 0.86000 0.85970 0.91486 0.91820 0.92281 0.91843 0.92195 0.92629 0.92424 0.91281 0.93292 0.91796 0.93823 0.84081 0.98002 0.90975 0.83691 0.90238 0.97488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -16.71 10.46 55.55 0.58 -16.13 16 2 C 0.08 1.80 5.15 -17.34 -0.09 1.71 16 3 Si 0.90 17.42 29.56 -169.99 -5.03 12.39 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.43 -10.41 9.03 -37.75 -0.34 -10.75 16 8 H 0.08 1.83 7.85 -52.49 -0.41 1.41 16 9 C 0.20 4.83 4.44 -84.83 -0.38 4.45 16 10 C -0.08 -2.01 10.74 -16.59 -0.18 -2.19 16 11 N -0.45 -11.05 10.29 -24.18 -0.25 -11.30 16 12 C -0.06 -1.36 8.96 -16.78 -0.15 -1.51 16 13 C 0.21 4.67 2.82 -155.01 -0.44 4.24 16 14 N -0.46 -8.76 4.44 -168.90 -0.75 -9.51 16 15 C 0.06 1.12 4.90 -3.84 -0.02 1.10 16 16 C -0.12 -1.66 6.09 -26.65 -0.16 -1.82 16 17 C -0.12 -1.57 5.70 -26.61 -0.15 -1.72 16 18 C -0.10 -1.45 4.88 -26.67 -0.13 -1.58 16 19 C 0.12 2.07 0.66 -131.58 -0.09 1.98 16 20 C -0.10 -1.69 4.87 -26.61 -0.13 -1.82 16 21 C -0.19 -3.73 5.50 -26.65 -0.15 -3.87 16 22 C 0.05 0.94 5.40 -3.83 -0.02 0.92 16 23 N -0.55 -11.18 1.59 -113.83 -0.18 -11.36 16 24 C 0.03 0.60 4.45 -3.85 -0.02 0.58 16 25 N -0.31 -7.23 2.96 -18.56 -0.05 -7.28 16 26 H 0.27 5.71 8.29 -40.82 -0.34 5.37 16 27 H 0.12 2.85 8.06 -52.48 -0.42 2.43 16 28 H 0.12 2.67 8.06 -52.48 -0.42 2.25 16 29 H 0.07 1.37 6.00 -51.93 -0.31 1.05 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.82 6.59 -51.93 -0.34 0.48 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.14 3.10 1.18 -96.07 -0.11 2.99 16 41 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 42 H 0.07 1.58 7.49 -51.93 -0.39 1.19 16 43 H 0.34 7.18 7.68 -105.46 -0.81 6.37 16 44 H 0.08 1.47 4.83 -51.93 -0.25 1.22 16 45 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -24.65 319.76 -10.55 -35.20 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -7.26 Total: 13.45 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.43 Total: -10.28 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.65 Total: -55.58 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -24.65 -10.55 -35.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157472632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.765 kcal (2) G-P(sol) polarization free energy of solvation -24.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds