Wall clock time and date at job start Tue Mar 31 2020 08:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 H 1.09001 * 109.46971 * 54.99683 * 3 2 1 5 5 C 1.52993 * 109.47229 * 294.99723 * 3 2 1 6 6 C 1.50697 * 109.47076 * 174.99726 * 3 2 1 7 7 N 1.31554 * 118.64335 * 60.04067 * 6 3 2 8 8 C 1.33203 * 120.71346 * 179.97438 * 7 6 3 9 9 N 1.36777 * 134.29605 * 179.97438 * 8 7 6 10 10 H 0.96998 * 124.99399 * 0.02562 * 9 8 7 11 11 C 1.37100 * 110.02063 * 179.97438 * 9 8 7 12 12 C 1.34304 * 109.80827 * 0.02562 * 11 9 8 13 13 C 1.40718 * 118.54798 * 359.95860 * 8 7 6 14 14 C 1.40302 * 118.67215 * 0.02562 * 13 8 7 15 15 N 1.38322 * 120.84227 * 179.97438 * 14 13 8 16 16 C 1.46500 * 120.00319 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.47268 * 34.99426 * 16 15 14 18 18 C 1.50696 * 109.47364 * 154.99895 * 16 15 14 19 19 H 1.07998 * 120.00157 * 0.02562 * 18 16 15 20 20 C 1.37883 * 119.99852 * 179.97438 * 18 16 15 21 21 N 1.31512 * 120.00073 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99693 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47345 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47303 * 119.99976 * 22 20 18 25 25 H 1.48507 * 109.46639 * 239.99676 * 22 20 18 26 26 C 1.53002 * 109.46856 * 275.00145 * 16 15 14 27 27 C 1.52996 * 109.47426 * 64.99581 * 26 16 15 28 28 N 1.32082 * 118.64283 * 239.99925 * 6 3 2 29 29 H 1.08994 * 109.47030 * 300.00265 * 1 2 3 30 30 H 1.09006 * 109.46410 * 59.99966 * 1 2 3 31 31 H 1.08996 * 109.47190 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47543 * 239.99708 * 2 1 3 33 33 H 1.09002 * 109.47061 * 119.99718 * 2 1 3 34 34 H 1.08998 * 109.47368 * 300.00334 * 5 3 2 35 35 H 1.09002 * 109.47047 * 60.00005 * 5 3 2 36 36 H 1.09000 * 109.47357 * 180.02562 * 5 3 2 37 37 H 1.07999 * 125.09517 * 179.97438 * 11 9 8 38 38 H 1.08005 * 126.59275 * 179.73726 * 12 11 9 39 39 H 0.97003 * 119.99976 * 359.97438 * 15 14 13 40 40 H 0.96998 * 120.00008 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.47367 * 185.00162 * 26 16 15 42 42 H 1.08999 * 109.46825 * 304.99864 * 26 16 15 43 43 H 1.08998 * 109.47524 * 300.00094 * 27 26 16 44 44 H 1.08999 * 109.47256 * 59.99923 * 27 26 16 45 45 H 1.08998 * 109.47179 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 7 4.2520 0.8396 -0.8040 8 6 5.5820 0.8164 -0.7356 9 7 6.5697 0.2862 -1.5193 10 1 6.4226 -0.2104 -2.3395 11 6 7.7981 0.5606 -0.9761 12 6 7.6474 1.2647 0.1576 13 6 6.2108 1.4535 0.3502 14 6 5.4116 2.0854 1.3147 15 7 5.9824 2.7246 2.4004 16 6 5.1303 3.3781 3.3970 17 1 4.2107 2.8060 3.5200 18 6 5.8593 3.4465 4.7141 19 1 6.8577 3.0438 4.8002 20 6 5.2521 4.0241 5.8090 21 7 4.0368 4.5157 5.7037 22 14 6.1561 4.1094 7.4414 23 1 7.4986 3.4912 7.2968 24 1 6.3058 5.5290 7.8507 25 1 5.3822 3.3753 8.4747 26 6 4.7909 4.7943 2.9277 27 6 3.9434 4.7209 1.6561 28 7 4.0911 2.0536 1.1592 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.0700 1.5875 -2.1491 35 1 0.5491 2.1252 -1.3969 36 1 1.9991 3.1540 -1.3075 37 1 8.7451 0.2555 -1.3963 38 1 8.4359 1.6196 0.8048 39 1 6.9469 2.7396 2.5024 40 1 3.6098 4.9224 6.4739 41 1 4.2318 5.3113 3.7076 42 1 5.7120 5.3385 2.7195 43 1 4.5025 4.2040 0.8761 44 1 3.0223 4.1766 1.8642 45 1 3.7020 5.7298 1.3216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:06 Heat of formation + Delta-G solvation = 67.978188 kcal Electronic energy + Delta-G solvation = -25341.787834 eV Core-core repulsion = 21973.364901 eV Total energy + Delta-G solvation = -3368.422932 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32355 -38.62846 -36.85393 -35.22116 -33.27531 -31.57732 -31.08526 -30.15331 -29.73850 -28.04011 -26.58105 -24.92387 -23.37403 -22.57720 -22.15097 -20.36756 -19.85602 -19.62702 -18.80921 -16.67956 -16.32742 -15.80459 -15.13951 -14.95469 -14.58609 -14.43453 -14.34963 -13.69979 -13.47741 -13.30078 -13.06469 -12.91652 -12.69500 -12.57727 -12.01874 -11.84969 -11.58376 -11.46143 -11.24703 -11.10052 -10.92645 -10.89138 -10.64720 -10.47401 -10.39494 -10.21387 -10.05025 -9.91580 -9.57184 -9.01490 -8.59791 -8.51314 -8.38574 -8.23278 -6.84809 -6.12469 -4.21298 1.59905 2.11763 2.97327 3.03679 3.23604 3.31794 3.34444 4.02007 4.35024 4.54004 4.57957 4.97691 5.03910 5.19267 5.22857 5.25879 5.31474 5.51676 5.56924 5.72591 5.73536 5.78342 5.95297 6.01970 6.09707 6.17625 6.23320 6.25053 6.42410 6.49393 6.52946 6.58386 6.64364 6.70715 6.75452 7.06318 7.15572 7.26677 7.39225 7.42618 7.59818 7.68755 7.76710 7.91856 8.13655 8.29811 8.58393 8.82899 9.16420 9.45099 10.92713 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.005020 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.305136 B = 5576.402476 C = 7021.284154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.017 4.017 4 H 0.096 0.904 5 C -0.137 4.137 6 C 0.389 3.611 7 N -0.590 5.590 8 C 0.343 3.657 9 N -0.576 5.576 10 H 0.414 0.586 11 C 0.013 3.987 12 C -0.154 4.154 13 C -0.288 4.288 14 C 0.497 3.503 15 N -0.672 5.672 16 C 0.273 3.727 17 H 0.057 0.943 18 C -0.535 4.535 19 H 0.060 0.940 20 C 0.068 3.932 21 N -0.881 5.881 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.126 4.126 27 C -0.132 4.132 28 N -0.580 5.580 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.171 0.829 38 H 0.144 0.856 39 H 0.400 0.600 40 H 0.264 0.736 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.033 0.967 44 H 0.056 0.944 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -6.889 -13.557 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.037 4.037 4 H 0.114 0.886 5 C -0.195 4.195 6 C 0.117 3.883 7 N -0.319 5.319 8 C 0.105 3.895 9 N -0.184 5.184 10 H 0.250 0.750 11 C -0.111 4.111 12 C -0.180 4.180 13 C -0.302 4.302 14 C 0.245 3.755 15 N -0.296 5.296 16 C 0.171 3.829 17 H 0.075 0.925 18 C -0.574 4.574 19 H 0.078 0.922 20 C -0.135 4.135 21 N -0.518 5.518 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.165 4.165 27 C -0.189 4.189 28 N -0.309 5.309 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.188 0.812 38 H 0.161 0.839 39 H 0.235 0.765 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.534 -6.748 -13.435 15.044 hybrid contribution 1.917 -0.101 0.644 2.024 sum 1.383 -6.850 -12.792 14.576 Atomic orbital electron populations 1.21822 0.95737 1.01328 1.01984 1.21460 0.95400 0.95332 1.02489 1.19899 0.86471 0.97466 0.99894 0.88588 1.21777 1.00821 1.00297 0.96593 1.22315 0.95913 0.86242 0.83835 1.67020 1.02990 1.29142 1.32754 1.18085 0.88078 0.93748 0.89565 1.41339 1.03899 1.49463 1.23721 0.74956 1.21586 0.87598 1.04786 0.97171 1.21439 0.93676 1.04349 0.98580 1.19904 0.95261 1.13641 1.01356 1.18152 0.87811 0.84430 0.85077 1.45477 1.09555 1.53052 1.21482 1.18909 0.90930 0.89445 0.83588 0.92492 1.21271 1.02062 1.39820 0.94198 0.92175 1.24844 0.94908 0.94826 0.98898 1.69897 1.12907 1.38469 1.30532 0.86427 0.79757 0.77761 0.83358 1.19793 1.20878 1.20877 1.21926 0.98022 0.99739 0.96809 1.21815 1.00780 0.97784 0.98529 1.68207 1.09603 1.27377 1.25750 0.92521 0.92503 0.93009 0.91231 0.92234 0.91923 0.92086 0.92920 0.81212 0.83874 0.76524 0.92633 0.88238 0.95368 0.94814 0.92526 0.96221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.67 37.16 0.36 -1.27 16 2 C -0.11 -1.44 5.25 -26.73 -0.14 -1.58 16 3 C -0.02 -0.25 2.71 -91.78 -0.25 -0.50 16 4 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 5 C -0.14 -1.79 8.84 37.15 0.33 -1.46 16 6 C 0.39 7.19 6.34 -157.15 -1.00 6.19 16 7 N -0.59 -10.53 9.85 -10.05 -0.10 -10.63 16 8 C 0.34 5.94 8.48 -155.85 -1.32 4.62 16 9 N -0.58 -7.45 6.03 -12.14 -0.07 -7.53 16 10 H 0.41 4.04 8.96 -40.82 -0.37 3.68 16 11 C 0.01 0.15 11.83 -16.58 -0.20 -0.05 16 12 C -0.15 -2.23 10.98 -37.79 -0.41 -2.65 16 13 C -0.29 -5.27 6.32 -105.00 -0.66 -5.94 16 14 C 0.50 10.27 6.08 -154.72 -0.94 9.33 16 15 N -0.67 -14.31 5.14 -54.78 -0.28 -14.59 16 16 C 0.27 6.72 2.25 -69.08 -0.16 6.57 16 17 H 0.06 1.59 7.58 -51.93 -0.39 1.20 16 18 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 21 N -0.88 -24.22 11.29 55.43 0.63 -23.59 16 22 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 27 C -0.13 -2.86 8.45 37.16 0.31 -2.55 16 28 N -0.58 -12.10 6.49 -9.83 -0.06 -12.16 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.83 7.99 -51.93 -0.42 0.41 16 35 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.40 7.78 8.46 -40.82 -0.35 7.43 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.03 0.73 5.59 -51.93 -0.29 0.44 16 44 H 0.06 1.26 7.69 -51.93 -0.40 0.86 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -29.80 358.90 -11.08 -40.88 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.96 Total: 11.77 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -4.62 Total: -5.05 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: 0.11 Total: -68.50 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.80 -11.08 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.858 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds