Wall clock time and date at job start Tue Mar 31 2020 09:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36354 * 119.91852 * 2 1 4 4 C 1.40876 * 119.83666 * 179.97438 * 3 2 1 5 5 C 1.41134 * 120.15912 * 179.97438 * 4 3 2 6 6 H 1.08007 * 119.99615 * 334.54435 * 5 4 3 7 7 C 1.39858 * 120.00442 * 154.53971 * 5 4 3 8 8 N 1.30909 * 119.99970 * 343.04685 * 7 5 4 9 9 Si 1.86804 * 120.00217 * 163.04803 * 7 5 4 10 10 H 1.48504 * 109.46844 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47268 * 120.00103 * 9 7 5 12 12 H 1.48507 * 109.46855 * 240.00103 * 9 7 5 13 13 C 1.40906 * 119.68764 * 0.02562 * 4 3 2 14 14 C 1.36325 * 119.83410 * 359.73670 * 13 4 3 15 15 C 1.39545 * 119.91957 * 179.97438 * 2 1 3 16 16 N 1.38859 * 119.84039 * 0.02562 * 15 2 1 17 17 C 1.46502 * 120.00128 * 179.97438 * 16 15 2 18 18 C 1.52996 * 109.47456 * 179.97438 * 17 16 15 19 19 H 1.08998 * 108.82775 * 56.49695 * 18 17 16 20 20 C 1.54114 * 108.80125 * 298.09540 * 18 17 16 21 21 C 1.53809 * 112.00430 * 197.80540 * 20 18 17 22 22 C 1.50813 * 111.56675 * 318.93364 * 21 20 18 23 23 N 1.47638 * 108.03896 * 95.09290 * 22 21 20 24 24 C 1.39777 * 114.76601 * 277.19140 * 23 22 21 25 25 C 1.50757 * 108.85284 * 174.99802 * 18 17 16 26 26 H 1.09004 * 109.54196 * 93.85348 * 25 18 17 27 27 C 1.52994 * 109.62416 * 333.62394 * 25 18 17 28 28 H 1.08998 * 109.47313 * 270.02509 * 1 2 3 29 29 H 1.08997 * 109.47114 * 30.02060 * 1 2 3 30 30 H 1.08999 * 109.47259 * 150.02279 * 1 2 3 31 31 H 1.07996 * 120.08543 * 359.95823 * 3 2 1 32 32 H 0.96993 * 119.99695 * 180.02562 * 8 7 5 33 33 H 1.07997 * 120.08031 * 180.02562 * 13 4 3 34 34 H 1.08005 * 119.91576 * 180.25056 * 14 13 4 35 35 H 0.96997 * 120.00228 * 359.97438 * 16 15 2 36 36 H 1.09004 * 109.46752 * 59.99225 * 17 16 15 37 37 H 1.08999 * 109.47038 * 299.99884 * 17 16 15 38 38 H 1.09000 * 109.01899 * 77.11336 * 20 18 17 39 39 H 1.09000 * 108.91050 * 318.41926 * 20 18 17 40 40 H 1.08999 * 109.05182 * 198.41617 * 21 20 18 41 41 H 1.09009 * 109.05020 * 79.44945 * 21 20 18 42 42 H 1.08992 * 109.75645 * 214.73194 * 22 21 20 43 43 H 1.09005 * 109.74513 * 335.41447 * 22 21 20 44 44 H 1.00901 * 110.99559 * 150.33588 * 23 22 21 45 45 H 1.09002 * 109.02261 * 182.86278 * 24 23 22 46 46 H 1.08998 * 109.02825 * 301.69205 * 24 23 22 47 47 H 1.08996 * 109.46853 * 300.41154 * 27 25 18 48 48 H 1.09005 * 109.46904 * 60.40594 * 27 25 18 49 49 H 1.08996 * 109.47534 * 180.40786 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1798 0.0005 5 6 4.3066 2.3991 0.0000 6 1 3.8491 3.2907 -0.4028 7 6 5.6034 2.4529 0.5211 8 7 6.0373 1.4921 1.2972 9 14 6.7162 3.8958 0.1098 10 1 5.9939 4.8400 -0.7801 11 1 7.1050 4.5937 1.3616 12 1 7.9347 3.4003 -0.5797 13 6 4.2919 -0.0453 0.0005 14 6 3.5988 -1.2192 0.0054 15 6 2.2030 -1.2095 0.0005 16 7 1.5037 -2.4091 0.0005 17 6 2.2308 -3.6809 0.0005 18 6 1.2318 -4.8397 0.0012 19 1 0.5705 -4.7344 -0.8588 20 6 0.3876 -4.7669 1.2885 21 6 -0.3200 -6.0990 1.5897 22 6 -0.8749 -6.7277 0.3362 23 7 0.1183 -7.6970 -0.1674 24 6 1.1429 -7.1391 -0.9373 25 6 1.9901 -6.1367 -0.1232 26 1 2.1820 -6.5435 0.8697 27 6 3.3186 -5.8885 -0.8403 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6471 2.1171 -0.0007 32 1 6.9365 1.5297 1.6589 33 1 5.3719 -0.0542 0.0014 34 1 4.1311 -2.1590 0.0095 35 1 0.5337 -2.4051 0.0005 36 1 2.8573 -3.7412 0.8905 37 1 2.8572 -3.7413 -0.8895 38 1 -0.3626 -3.9840 1.1775 39 1 1.0397 -4.5149 2.1248 40 1 -1.1367 -5.9180 2.2885 41 1 0.3932 -6.7854 2.0463 42 1 -1.8085 -7.2419 0.5641 43 1 -1.0525 -5.9576 -0.4146 44 1 -0.3325 -8.4540 -0.6593 45 1 1.7895 -7.9378 -1.3005 46 1 0.7047 -6.6225 -1.7912 47 1 3.1252 -5.4787 -1.8317 48 1 3.9154 -5.1809 -0.2648 49 1 3.8614 -6.8289 -0.9354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162465939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:31 Heat of formation + Delta-G solvation = 9.863936 kcal Electronic energy + Delta-G solvation = -25051.267067 eV Core-core repulsion = 21783.864455 eV Total energy + Delta-G solvation = -3267.402612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.86543 -38.10632 -35.75744 -34.11792 -33.39262 -32.45940 -31.23542 -29.13112 -27.82656 -26.74462 -25.74889 -24.20190 -24.00982 -22.91919 -20.79934 -20.20853 -19.86362 -18.75643 -16.87989 -16.76218 -16.19743 -15.45984 -15.39007 -15.09327 -14.87064 -14.34019 -13.72838 -13.54300 -13.38526 -13.15643 -12.95472 -12.77619 -12.71813 -12.36839 -12.28930 -11.80156 -11.70845 -11.63559 -11.46233 -11.39224 -11.20904 -11.01279 -10.90226 -10.83452 -10.66104 -10.53876 -10.30183 -10.17877 -10.11628 -9.59403 -9.24799 -9.16287 -8.56778 -8.44828 -7.30699 -6.57370 -6.28639 -3.98869 2.94191 3.09696 3.17648 3.23192 3.38065 3.99218 4.09018 4.36907 4.56128 4.68832 4.79091 4.84859 4.93532 5.03064 5.08420 5.38539 5.40316 5.49015 5.50477 5.60201 5.63343 5.77526 5.78939 5.87748 5.94406 5.94674 6.01685 6.08466 6.09423 6.14012 6.16009 6.28500 6.33979 6.35930 6.38482 6.48763 6.58707 6.95442 6.99930 7.04561 7.27119 7.28052 7.43716 7.61761 7.76492 7.90947 8.20588 8.35511 8.54727 8.76582 8.86099 9.10977 9.20607 10.42757 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.003046 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.123691 B = 9189.442982 C = 9886.672233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.137 4.137 3 C -0.182 4.182 4 C 0.075 3.925 5 C -0.467 4.467 6 H 0.071 0.929 7 C 0.074 3.926 8 N -0.810 5.810 9 Si 0.901 3.099 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.275 1.275 13 C -0.123 4.123 14 C -0.164 4.164 15 C 0.101 3.899 16 N -0.761 5.761 17 C 0.138 3.862 18 C -0.092 4.092 19 H 0.064 0.936 20 C -0.110 4.110 21 C -0.119 4.119 22 C 0.066 3.934 23 N -0.704 5.704 24 C 0.083 3.917 25 C -0.081 4.081 26 H 0.081 0.919 27 C -0.151 4.151 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.274 0.726 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.382 0.618 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.342 0.658 45 H 0.069 0.931 46 H 0.014 0.986 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.450 -16.279 -2.291 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C -0.203 4.203 4 C 0.072 3.928 5 C -0.498 4.498 6 H 0.090 0.910 7 C -0.140 4.140 8 N -0.438 5.438 9 Si 0.727 3.273 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.200 1.200 13 C -0.143 4.143 14 C -0.186 4.186 15 C 0.004 3.996 16 N -0.398 5.398 17 C 0.013 3.987 18 C -0.111 4.111 19 H 0.082 0.918 20 C -0.148 4.148 21 C -0.157 4.157 22 C -0.062 4.062 23 N -0.335 5.335 24 C -0.048 4.048 25 C -0.100 4.100 26 H 0.100 0.900 27 C -0.209 4.209 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.216 0.784 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.162 0.838 45 H 0.087 0.913 46 H 0.032 0.968 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.720 -16.376 -1.618 18.624 hybrid contribution -0.169 0.858 -0.835 1.209 sum -8.889 -15.518 -2.453 18.051 Atomic orbital electron populations 1.20465 0.94173 1.00255 1.00087 1.18631 0.93330 0.92394 1.09702 1.20441 0.94268 0.94796 1.10750 1.17466 0.90608 0.93209 0.91533 1.19370 0.98256 0.95935 1.36284 0.91040 1.25777 0.98403 0.96929 0.92937 1.69864 1.17739 1.32364 1.23799 0.86384 0.80138 0.81808 0.79012 1.18696 1.20323 1.20025 1.20931 0.99619 0.91115 1.02670 1.20069 0.91605 0.97429 1.09492 1.17156 0.90861 0.84419 1.07175 1.44028 1.06505 1.02181 1.87065 1.21427 0.93984 0.82982 1.00322 1.21229 0.96914 0.94656 0.98261 0.91755 1.21929 0.98680 0.96756 0.97452 1.21442 1.00174 0.96920 0.97177 1.21670 0.93450 0.94120 0.96958 1.57262 1.14977 1.14373 1.46935 1.20852 0.93182 0.97352 0.93410 1.20988 0.94575 0.94205 1.00268 0.90033 1.21979 0.96488 1.01602 1.00804 0.93309 0.92977 0.93858 0.89150 0.91484 0.86492 0.89472 0.78391 0.93616 0.92832 0.92390 0.91738 0.92208 0.90745 0.91406 0.94128 0.83823 0.91310 0.96756 0.92519 0.91423 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.55 36.00 0.34 -1.31 16 2 C -0.14 -3.07 5.86 -104.82 -0.61 -3.68 16 3 C -0.18 -4.57 9.37 -39.26 -0.37 -4.94 16 4 C 0.07 2.05 5.57 -106.79 -0.59 1.45 16 5 C -0.47 -12.88 9.03 -37.88 -0.34 -13.23 16 6 H 0.07 1.91 7.90 -52.48 -0.41 1.50 16 7 C 0.07 1.94 5.15 -17.34 -0.09 1.86 16 8 N -0.81 -21.84 10.96 55.54 0.61 -21.23 16 9 Si 0.90 19.55 29.59 -169.99 -5.03 14.52 16 10 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 13 C -0.12 -3.28 8.63 -39.26 -0.34 -3.62 16 14 C -0.16 -3.90 9.23 -39.77 -0.37 -4.27 16 15 C 0.10 2.23 6.65 -83.69 -0.56 1.67 16 16 N -0.76 -13.35 5.36 -58.50 -0.31 -13.66 16 17 C 0.14 2.07 2.93 -4.04 -0.01 2.05 16 18 C -0.09 -1.08 1.65 -91.16 -0.15 -1.23 16 19 H 0.06 0.79 6.58 -51.93 -0.34 0.44 16 20 C -0.11 -1.25 4.88 -25.73 -0.13 -1.37 16 21 C -0.12 -1.14 5.41 -27.41 -0.15 -1.29 16 22 C 0.07 0.57 6.22 -4.52 -0.03 0.54 16 23 N -0.70 -6.01 6.07 -118.54 -0.72 -6.73 16 24 C 0.08 0.76 5.38 -6.74 -0.04 0.73 16 25 C -0.08 -0.85 2.32 -90.99 -0.21 -1.06 16 26 H 0.08 0.92 7.11 -51.93 -0.37 0.55 16 27 C -0.15 -1.59 7.74 37.15 0.29 -1.30 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.87 8.08 -51.93 -0.42 0.46 16 30 H 0.04 0.68 6.53 -51.93 -0.34 0.34 16 31 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 33 H 0.12 3.23 6.19 -52.49 -0.32 2.91 16 34 H 0.09 1.90 6.68 -52.48 -0.35 1.55 16 35 H 0.38 6.11 5.59 -40.82 -0.23 5.88 16 36 H 0.05 0.74 7.63 -51.93 -0.40 0.35 16 37 H 0.05 0.83 5.75 -51.93 -0.30 0.53 16 38 H 0.06 0.67 7.46 -51.93 -0.39 0.28 16 39 H 0.06 0.81 7.93 -51.93 -0.41 0.40 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.77 7.26 -51.92 -0.38 0.40 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.38 6.67 -51.93 -0.35 0.04 16 44 H 0.34 2.30 8.85 -39.29 -0.35 1.95 16 45 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 46 H 0.01 0.14 7.55 -51.93 -0.39 -0.25 16 47 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 48 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -28.43 363.65 -11.47 -39.90 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -8.14 Total: 10.71 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -3.35 Total: -28.99 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.42 Total: -41.62 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.43 -11.47 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162465939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.763 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds