Wall clock time and date at job start Tue Mar 31 2020 09:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36354 * 119.91852 * 2 1 4 4 C 1.40876 * 119.83666 * 179.97438 * 3 2 1 5 5 C 1.41134 * 120.15912 * 179.97438 * 4 3 2 6 6 H 1.08007 * 119.99615 * 334.54435 * 5 4 3 7 7 C 1.39858 * 120.00442 * 154.53971 * 5 4 3 8 8 N 1.30909 * 119.99970 * 343.04685 * 7 5 4 9 9 Si 1.86804 * 120.00217 * 163.04803 * 7 5 4 10 10 H 1.48504 * 109.46844 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47268 * 120.00103 * 9 7 5 12 12 H 1.48507 * 109.46855 * 240.00103 * 9 7 5 13 13 C 1.40906 * 119.68764 * 0.02562 * 4 3 2 14 14 C 1.36325 * 119.83410 * 359.73670 * 13 4 3 15 15 C 1.39545 * 119.91957 * 179.97438 * 2 1 3 16 16 N 1.38859 * 119.84039 * 0.02562 * 15 2 1 17 17 C 1.46502 * 120.00128 * 179.97438 * 16 15 2 18 18 C 1.52996 * 109.47456 * 179.97438 * 17 16 15 19 19 H 1.08998 * 108.82775 * 56.49695 * 18 17 16 20 20 C 1.54114 * 108.80125 * 298.09540 * 18 17 16 21 21 C 1.53809 * 112.00430 * 197.80540 * 20 18 17 22 22 C 1.50813 * 111.56675 * 318.93364 * 21 20 18 23 23 N 1.47638 * 108.03896 * 95.09290 * 22 21 20 24 24 C 1.39777 * 114.76601 * 277.19140 * 23 22 21 25 25 C 1.50757 * 108.85284 * 174.99802 * 18 17 16 26 26 H 1.09004 * 109.54196 * 93.85348 * 25 18 17 27 27 C 1.52994 * 109.62416 * 333.62394 * 25 18 17 28 28 H 1.08998 * 109.47313 * 270.02509 * 1 2 3 29 29 H 1.08997 * 109.47114 * 30.02060 * 1 2 3 30 30 H 1.08999 * 109.47259 * 150.02279 * 1 2 3 31 31 H 1.07996 * 120.08543 * 359.95823 * 3 2 1 32 32 H 0.96993 * 119.99695 * 180.02562 * 8 7 5 33 33 H 1.07997 * 120.08031 * 180.02562 * 13 4 3 34 34 H 1.08005 * 119.91576 * 180.25056 * 14 13 4 35 35 H 0.96997 * 120.00228 * 359.97438 * 16 15 2 36 36 H 1.09004 * 109.46752 * 59.99225 * 17 16 15 37 37 H 1.08999 * 109.47038 * 299.99884 * 17 16 15 38 38 H 1.09000 * 109.01899 * 77.11336 * 20 18 17 39 39 H 1.09000 * 108.91050 * 318.41926 * 20 18 17 40 40 H 1.08999 * 109.05182 * 198.41617 * 21 20 18 41 41 H 1.09009 * 109.05020 * 79.44945 * 21 20 18 42 42 H 1.08992 * 109.75645 * 214.73194 * 22 21 20 43 43 H 1.09005 * 109.74513 * 335.41447 * 22 21 20 44 44 H 1.00901 * 110.99559 * 150.33588 * 23 22 21 45 45 H 1.09002 * 109.02261 * 182.86278 * 24 23 22 46 46 H 1.08998 * 109.02825 * 301.69205 * 24 23 22 47 47 H 1.08996 * 109.46853 * 300.41154 * 27 25 18 48 48 H 1.09005 * 109.46904 * 60.40594 * 27 25 18 49 49 H 1.08996 * 109.47534 * 180.40786 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1798 0.0005 5 6 4.3066 2.3991 0.0000 6 1 3.8491 3.2907 -0.4028 7 6 5.6034 2.4529 0.5211 8 7 6.0373 1.4921 1.2972 9 14 6.7162 3.8958 0.1098 10 1 5.9939 4.8400 -0.7801 11 1 7.1050 4.5937 1.3616 12 1 7.9347 3.4003 -0.5797 13 6 4.2919 -0.0453 0.0005 14 6 3.5988 -1.2192 0.0054 15 6 2.2030 -1.2095 0.0005 16 7 1.5037 -2.4091 0.0005 17 6 2.2308 -3.6809 0.0005 18 6 1.2318 -4.8397 0.0012 19 1 0.5705 -4.7344 -0.8588 20 6 0.3876 -4.7669 1.2885 21 6 -0.3200 -6.0990 1.5897 22 6 -0.8749 -6.7277 0.3362 23 7 0.1183 -7.6970 -0.1674 24 6 1.1429 -7.1391 -0.9373 25 6 1.9901 -6.1367 -0.1232 26 1 2.1820 -6.5435 0.8697 27 6 3.3186 -5.8885 -0.8403 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6471 2.1171 -0.0007 32 1 6.9365 1.5297 1.6589 33 1 5.3719 -0.0542 0.0014 34 1 4.1311 -2.1590 0.0095 35 1 0.5337 -2.4051 0.0005 36 1 2.8573 -3.7412 0.8905 37 1 2.8572 -3.7413 -0.8895 38 1 -0.3626 -3.9840 1.1775 39 1 1.0397 -4.5149 2.1248 40 1 -1.1367 -5.9180 2.2885 41 1 0.3932 -6.7854 2.0463 42 1 -1.8085 -7.2419 0.5641 43 1 -1.0525 -5.9576 -0.4146 44 1 -0.3325 -8.4540 -0.6593 45 1 1.7895 -7.9378 -1.3005 46 1 0.7047 -6.6225 -1.7912 47 1 3.1252 -5.4787 -1.8317 48 1 3.9154 -5.1809 -0.2648 49 1 3.8614 -6.8289 -0.9354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162465939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:30 Heat of formation + Delta-G solvation = -5.785385 kcal Electronic energy + Delta-G solvation = -25051.945673 eV Core-core repulsion = 21783.864455 eV Total energy + Delta-G solvation = -3268.081218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83508 -39.79339 -37.06461 -35.66357 -34.34681 -33.86699 -33.00924 -30.81608 -28.89148 -27.89735 -27.48662 -25.80346 -24.94673 -24.12752 -21.90734 -21.86514 -21.42246 -19.78215 -18.74223 -17.91935 -17.44998 -16.90503 -16.66955 -16.28123 -15.95002 -15.53879 -15.28335 -14.80009 -14.77131 -14.47385 -14.16122 -14.08391 -13.90004 -13.67626 -13.58329 -13.34431 -13.29755 -13.09432 -12.77154 -12.72559 -12.55516 -12.31512 -12.23535 -12.13567 -11.99963 -11.61055 -11.49213 -11.40589 -11.19682 -11.17905 -11.07772 -10.96136 -10.24307 -9.23317 -9.22178 -8.52115 -8.08973 -6.00008 1.11322 1.16710 1.39006 1.53521 1.57548 2.27259 2.83671 2.94857 3.32833 3.66823 3.80763 3.83540 3.90387 4.13154 4.21755 4.27370 4.35682 4.42514 4.48524 4.56952 4.63947 4.68075 4.72410 4.73310 4.78616 4.88714 4.91350 4.93713 4.98515 5.04150 5.09024 5.10160 5.12320 5.19071 5.23793 5.28164 5.32850 5.38454 5.48689 5.52889 5.56716 5.72017 5.89661 6.00403 6.21687 6.38538 6.42469 6.67786 6.69373 6.89258 7.09784 7.16803 7.34636 8.49923 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.003046 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.123691 B = 9189.442982 C = 9886.672233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.144 4.144 3 C -0.194 4.194 4 C 0.037 3.963 5 C -0.505 4.505 6 H 0.066 0.934 7 C 0.030 3.970 8 N -0.844 5.844 9 Si 0.976 3.024 10 H -0.261 1.261 11 H -0.268 1.268 12 H -0.267 1.267 13 C -0.146 4.146 14 C -0.175 4.175 15 C 0.115 3.885 16 N -0.749 5.749 17 C 0.138 3.862 18 C -0.079 4.079 19 H 0.067 0.933 20 C -0.109 4.109 21 C -0.113 4.113 22 C 0.067 3.933 23 N -0.707 5.707 24 C 0.089 3.911 25 C -0.078 4.078 26 H 0.075 0.925 27 C -0.150 4.150 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.281 0.719 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.394 0.606 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.356 0.644 45 H 0.080 0.920 46 H 0.011 0.989 47 H 0.054 0.946 48 H 0.050 0.950 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 -17.807 -2.741 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C -0.214 4.214 4 C 0.034 3.966 5 C -0.537 4.537 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.473 5.473 9 Si 0.798 3.202 10 H -0.184 1.184 11 H -0.193 1.193 12 H -0.192 1.192 13 C -0.166 4.166 14 C -0.197 4.197 15 C 0.015 3.985 16 N -0.385 5.385 17 C 0.013 3.987 18 C -0.097 4.097 19 H 0.086 0.914 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.061 4.061 23 N -0.341 5.341 24 C -0.042 4.042 25 C -0.097 4.097 26 H 0.093 0.907 27 C -0.207 4.207 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.230 0.770 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.177 0.823 45 H 0.098 0.902 46 H 0.029 0.971 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.518 -17.950 -2.071 20.907 hybrid contribution 0.264 1.182 -0.675 1.387 sum -10.254 -16.768 -2.746 19.845 Atomic orbital electron populations 1.20481 0.90430 1.02023 1.01497 1.19103 0.96135 0.91490 1.08132 1.20657 0.93720 0.96196 1.10820 1.17793 0.91975 0.93585 0.93270 1.19587 0.99898 0.96056 1.38132 0.91593 1.26610 0.99346 0.99929 0.92213 1.69934 1.18393 1.34335 1.24607 0.85254 0.77888 0.78108 0.78946 1.18448 1.19350 1.19177 1.20825 0.98829 0.92152 1.04795 1.20208 0.92771 0.97069 1.09678 1.17284 0.90474 0.86118 1.04603 1.44061 1.07109 1.01617 1.85714 1.21547 0.94676 0.82960 0.99476 1.21145 0.96135 0.93750 0.98706 0.91446 1.21911 0.98358 0.98036 0.96384 1.21394 1.00124 0.95596 0.98016 1.21677 0.94119 0.94198 0.96134 1.57222 1.15055 1.14689 1.47084 1.20763 0.93350 0.97213 0.92905 1.20957 0.94660 0.93862 1.00264 0.90673 1.21946 0.96530 1.01963 1.00293 0.91907 0.91894 0.91492 0.88780 0.90899 0.88588 0.88188 0.77017 0.94950 0.93160 0.92375 0.93426 0.91128 0.91543 0.89523 0.94654 0.82341 0.90219 0.97061 0.92739 0.93063 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.55 71.23 0.68 -2.20 16 2 C -0.14 -6.38 5.86 -19.99 -0.12 -6.49 16 3 C -0.19 -9.91 9.37 22.48 0.21 -9.70 16 4 C 0.04 2.09 5.57 -21.27 -0.12 1.97 16 5 C -0.51 -29.12 9.03 23.37 0.21 -28.91 16 6 H 0.07 3.70 7.90 -2.91 -0.02 3.68 16 7 C 0.03 1.64 5.15 85.22 0.44 2.08 16 8 N -0.84 -47.34 10.96 21.81 0.24 -47.10 16 9 Si 0.98 41.15 29.59 68.60 2.03 43.18 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 13 C -0.15 -8.13 8.63 22.48 0.19 -7.94 16 14 C -0.18 -8.52 9.23 22.15 0.20 -8.32 16 15 C 0.11 5.00 6.65 38.67 0.26 5.26 16 16 N -0.75 -25.12 5.36 -338.99 -1.82 -26.93 16 17 C 0.14 4.01 2.93 86.38 0.25 4.26 16 18 C -0.08 -1.71 1.65 -11.15 -0.02 -1.73 16 19 H 0.07 1.48 6.58 -2.39 -0.02 1.46 16 20 C -0.11 -2.28 4.88 31.24 0.15 -2.12 16 21 C -0.11 -1.90 5.41 30.16 0.16 -1.74 16 22 C 0.07 0.95 6.22 85.45 0.53 1.48 16 23 N -0.71 -10.05 6.07 -528.94 -3.21 -13.26 16 24 C 0.09 1.41 5.38 88.08 0.47 1.88 16 25 C -0.08 -1.51 2.32 -11.03 -0.03 -1.53 16 26 H 0.07 1.58 7.11 -2.39 -0.02 1.57 16 27 C -0.15 -2.98 7.74 71.98 0.56 -2.42 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 30 H 0.07 1.87 6.53 -2.39 -0.02 1.86 16 31 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 33 H 0.10 5.65 6.19 -2.91 -0.02 5.63 16 34 H 0.10 4.47 6.68 -2.91 -0.02 4.45 16 35 H 0.39 11.53 5.59 -92.71 -0.52 11.02 16 36 H 0.03 1.05 7.63 -2.39 -0.02 1.03 16 37 H 0.05 1.53 5.75 -2.39 -0.01 1.52 16 38 H 0.06 1.20 7.46 -2.39 -0.02 1.19 16 39 H 0.05 1.15 7.93 -2.39 -0.02 1.14 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.25 7.26 -2.38 -0.02 1.23 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.04 0.55 6.67 -2.38 -0.02 0.54 16 44 H 0.36 3.65 8.85 -89.69 -0.79 2.86 16 45 H 0.08 1.11 8.01 -2.39 -0.02 1.10 16 46 H 0.01 0.19 7.55 -2.39 -0.02 0.18 16 47 H 0.05 1.10 7.67 -2.39 -0.02 1.08 16 48 H 0.05 1.18 6.44 -2.38 -0.02 1.16 16 49 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -63.79 363.65 0.93 -62.86 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.36 Total: 37.42 kcal Atomic # 6 Polarization: -60.22 SS G_CDS: 4.05 Total: -56.17 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -4.79 Total: -87.29 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -63.79 0.93 -62.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162465939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.072 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds