Wall clock time and date at job start Tue Mar 31 2020 08:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38686 * 119.27449 * 2 1 4 4 C 1.38010 * 119.62550 * 179.97438 * 3 2 1 5 5 C 1.41006 * 118.28186 * 359.74027 * 4 3 2 6 6 C 1.41012 * 120.70852 * 180.24974 * 5 4 3 7 7 H 1.08002 * 120.00349 * 207.53738 * 6 5 4 8 8 C 1.39948 * 120.00054 * 27.52935 * 6 5 4 9 9 N 1.30875 * 119.99806 * 13.44421 * 8 6 5 10 10 Si 1.86802 * 120.00183 * 193.44096 * 8 6 5 11 11 H 1.48493 * 109.47118 * 60.00171 * 10 8 6 12 12 H 1.48510 * 109.46969 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46873 * 300.00116 * 10 8 6 14 14 C 1.41707 * 118.58633 * 0.49857 * 5 4 3 15 15 N 1.38097 * 119.90398 * 179.77756 * 14 5 4 16 16 C 1.46990 * 111.00126 * 112.82470 * 15 14 5 17 17 C 1.52995 * 109.23520 * 183.40325 * 16 15 14 18 18 N 1.47027 * 109.52757 * 301.41851 * 17 16 15 19 19 C 1.47024 * 110.48396 * 182.53726 * 18 17 16 20 20 C 1.52925 * 109.54704 * 177.47032 * 19 18 17 21 21 N 1.46994 * 109.21247 * 58.60834 * 20 19 18 22 22 C 1.46904 * 110.73155 * 300.33107 * 21 20 19 23 23 C 1.46928 * 110.97405 * 58.97702 * 18 17 16 24 24 H 1.09001 * 109.52016 * 61.51462 * 23 18 17 25 25 C 1.46911 * 110.99438 * 236.43586 * 15 14 5 26 26 N 1.31966 * 119.27959 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47235 * 270.02292 * 1 2 3 28 28 H 1.08997 * 109.47187 * 30.02517 * 1 2 3 29 29 H 1.09004 * 109.47246 * 150.02807 * 1 2 3 30 30 H 1.07997 * 120.18637 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.85980 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99836 * 180.02562 * 9 8 6 33 33 H 1.08992 * 109.50908 * 303.33152 * 16 15 14 34 34 H 1.08999 * 109.50685 * 63.47672 * 16 15 14 35 35 H 1.08996 * 109.46173 * 61.43601 * 17 16 15 36 36 H 1.08996 * 109.46195 * 181.40599 * 17 16 15 37 37 H 1.09002 * 109.45935 * 297.51485 * 19 18 17 38 38 H 1.09004 * 109.45723 * 57.47131 * 19 18 17 39 39 H 1.08996 * 109.52588 * 298.68844 * 20 19 18 40 40 H 1.08997 * 109.54987 * 178.54927 * 20 19 18 41 41 H 1.00903 * 110.99844 * 176.56754 * 21 20 19 42 42 H 1.08997 * 109.45964 * 299.43796 * 22 21 20 43 43 H 1.09003 * 109.46010 * 179.47987 * 22 21 20 44 44 H 1.08995 * 109.46491 * 296.79774 * 25 15 14 45 45 H 1.08995 * 109.45761 * 56.77708 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2182 0.0005 5 6 4.2409 -0.0194 0.0067 6 6 5.6501 -0.0705 0.0128 7 1 6.1616 -0.9200 -0.4152 8 6 6.3859 0.9797 0.5733 9 7 5.7871 1.8734 1.3188 10 14 8.2227 1.1060 0.2576 11 1 8.4664 1.2360 -1.2014 12 1 8.7647 2.2978 0.9586 13 1 8.8973 -0.1156 0.7652 14 6 3.4737 -1.2108 0.0012 15 7 4.1074 -2.4378 0.0024 16 6 3.8702 -3.1520 1.2650 17 6 4.6570 -4.4641 1.2574 18 7 4.2373 -5.2823 0.1102 19 6 4.9375 -6.5751 0.1166 20 6 4.4395 -7.4325 -1.0477 21 7 4.6779 -6.7188 -2.3105 22 6 3.9716 -5.4307 -2.3212 23 6 4.4610 -4.5687 -1.1546 24 1 5.5246 -4.3612 -1.2724 25 6 3.6807 -3.2517 -1.1438 26 7 2.1524 -1.1511 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3634 -0.8903 -0.5134 30 1 1.6364 2.1399 -0.0004 31 1 4.1135 2.1487 0.0010 32 1 6.2971 2.6015 1.7070 33 1 4.2003 -2.5344 2.1002 34 1 2.8063 -3.3661 1.3677 35 1 5.7225 -4.2481 1.1790 36 1 4.4641 -5.0086 2.1817 37 1 6.0096 -6.4079 0.0123 38 1 4.7402 -7.0902 1.0568 39 1 3.3721 -7.6201 -0.9315 40 1 4.9769 -8.3807 -1.0583 41 1 4.4099 -7.2847 -3.1017 42 1 2.9001 -5.6033 -2.2207 43 1 4.1697 -4.9158 -3.2613 44 1 2.6143 -3.4620 -1.0630 45 1 3.8745 -2.7072 -2.0679 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164401845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:45 Heat of formation + Delta-G solvation = 50.060125 kcal Electronic energy + Delta-G solvation = -25633.892469 eV Core-core repulsion = 22264.692551 eV Total energy + Delta-G solvation = -3369.199918 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.81107 -38.50049 -36.18141 -34.19277 -33.84156 -31.72588 -30.86385 -30.11719 -28.93488 -27.71056 -25.23489 -24.51529 -23.64881 -22.60127 -21.34673 -20.55049 -19.72612 -19.18764 -17.26236 -16.55885 -16.03685 -15.53972 -14.99743 -14.80408 -14.57458 -14.42425 -14.19479 -13.92032 -13.72797 -13.40200 -13.03066 -12.92504 -12.58214 -12.09943 -11.82754 -11.76015 -11.69626 -11.43579 -11.41160 -11.25979 -11.17239 -10.94803 -10.89488 -10.69495 -10.54004 -10.31045 -10.15816 -9.77503 -9.32206 -8.56631 -8.38962 -8.11311 -8.06214 -7.48727 -7.33962 -6.79329 -4.38519 2.58229 2.90187 3.04189 3.08144 3.20071 3.89370 4.07475 4.15396 4.58255 4.68878 4.97654 5.12705 5.25166 5.36741 5.46240 5.52543 5.54948 5.70453 5.75865 5.78972 5.82788 5.91927 5.94820 5.98161 6.09189 6.14698 6.19216 6.33210 6.40520 6.45872 6.51383 6.57133 6.65020 6.88997 6.89503 6.97476 7.11655 7.17622 7.19716 7.33148 7.37152 7.61965 7.72214 7.85649 8.02341 8.31667 8.62084 8.71953 8.95093 9.61024 10.10432 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.005519 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.479077 B = 5072.036147 C = 6604.242535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.007 4.007 3 C -0.146 4.146 4 C -0.132 4.132 5 C 0.093 3.907 6 C -0.416 4.416 7 H 0.090 0.910 8 C 0.069 3.931 9 N -0.795 5.795 10 Si 0.913 3.087 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.156 3.844 15 N -0.450 5.450 16 C 0.070 3.930 17 C 0.060 3.940 18 N -0.534 5.534 19 C 0.055 3.945 20 C 0.060 3.940 21 N -0.691 5.691 22 C 0.065 3.935 23 C 0.091 3.909 24 H 0.056 0.944 25 C 0.073 3.927 26 N -0.486 5.486 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.282 0.718 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.340 0.660 42 H 0.038 0.962 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -10.481 -2.848 10.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.148 4.148 3 C -0.167 4.167 4 C -0.158 4.158 5 C 0.087 3.913 6 C -0.446 4.446 7 H 0.108 0.892 8 C -0.148 4.148 9 N -0.421 5.421 10 Si 0.737 3.263 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.188 1.188 14 C -0.076 4.076 15 N -0.172 5.172 16 C -0.058 4.058 17 C -0.068 4.068 18 N -0.260 5.260 19 C -0.073 4.073 20 C -0.070 4.070 21 N -0.322 5.322 22 C -0.065 4.065 23 C -0.018 4.018 24 H 0.074 0.926 25 C -0.056 4.056 26 N -0.198 5.198 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.158 0.842 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.952 -10.762 -2.476 11.084 hybrid contribution 0.407 0.717 -0.059 0.827 sum -0.544 -10.045 -2.535 10.374 Atomic orbital electron populations 1.20267 0.91906 1.00579 1.00258 1.20006 0.94439 0.88311 1.12037 1.21428 0.95376 0.96902 1.02954 1.21640 0.92320 0.98743 1.03146 1.18078 0.94142 0.89735 0.89339 1.19491 0.90901 1.03224 1.30939 0.89169 1.26050 1.01477 0.94387 0.92928 1.69804 1.38718 1.11233 1.22311 0.86278 0.81663 0.78554 0.79770 1.18773 1.20432 1.18844 1.19310 0.86241 0.89788 1.12230 1.59634 1.54923 1.01088 1.01510 1.22029 0.98189 0.92642 0.92926 1.22169 0.98272 0.93599 0.92768 1.62391 1.56985 1.03689 1.02960 1.22104 0.96599 0.90768 0.97858 1.21964 0.99148 0.96257 0.89609 1.60521 1.61490 1.05763 1.04440 1.21987 0.95970 0.90041 0.98484 1.21695 0.99184 0.92620 0.88281 0.92606 1.22009 0.97462 0.91380 0.94713 1.66756 1.11178 1.30234 1.11590 0.93416 0.93053 0.92911 0.88494 0.85510 0.90696 0.90685 0.93991 0.93941 0.90954 0.94191 0.90701 0.94461 0.90668 0.84224 0.94360 0.90290 0.93660 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.15 36.00 0.37 -0.96 16 2 C -0.01 -0.17 6.79 -82.37 -0.56 -0.73 16 3 C -0.15 -3.39 9.69 -39.50 -0.38 -3.77 16 4 C -0.13 -3.35 8.77 -38.62 -0.34 -3.69 16 5 C 0.09 2.43 5.58 -106.47 -0.59 1.83 16 6 C -0.42 -10.66 8.68 -37.89 -0.33 -10.99 16 7 H 0.09 2.30 7.63 -52.49 -0.40 1.90 16 8 C 0.07 1.68 5.23 -17.32 -0.09 1.59 16 9 N -0.80 -19.84 10.95 55.55 0.61 -19.23 16 10 Si 0.91 18.39 29.58 -169.99 -5.03 13.36 16 11 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 12 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 14 C 0.16 3.84 5.36 -155.02 -0.83 3.01 16 15 N -0.45 -9.81 3.92 -172.54 -0.68 -10.49 16 16 C 0.07 1.39 5.47 -3.78 -0.02 1.37 16 17 C 0.06 0.99 5.58 -3.76 -0.02 0.97 16 18 N -0.53 -8.41 4.70 -226.36 -1.06 -9.47 16 19 C 0.06 0.71 5.58 -3.79 -0.02 0.69 16 20 C 0.06 0.68 6.72 -3.81 -0.03 0.65 16 21 N -0.69 -8.27 6.91 -113.70 -0.79 -9.06 16 22 C 0.07 0.89 5.96 -3.78 -0.02 0.87 16 23 C 0.09 1.51 2.46 -67.61 -0.17 1.34 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 C 0.07 1.41 4.63 -3.77 -0.02 1.40 16 26 N -0.49 -11.77 9.50 -8.11 -0.08 -11.84 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 31 H 0.13 3.26 6.33 -52.49 -0.33 2.93 16 32 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 33 H 0.07 1.58 8.13 -51.93 -0.42 1.16 16 34 H 0.04 0.88 8.05 -51.93 -0.42 0.47 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.34 3.25 8.90 -39.29 -0.35 2.91 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.93 7.87 -51.93 -0.41 0.53 16 45 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -27.66 352.54 -12.14 -39.80 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.38 Total: 8.04 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.05 Total: -6.43 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -2.00 Total: -60.10 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.66 -12.14 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164401845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.864 kcal (2) G-P(sol) polarization free energy of solvation -27.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds