Wall clock time and date at job start Tue Mar 31 2020 08:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38686 * 119.27449 * 2 1 4 4 C 1.38010 * 119.62550 * 179.97438 * 3 2 1 5 5 C 1.41006 * 118.28186 * 359.74027 * 4 3 2 6 6 C 1.41012 * 120.70852 * 180.24974 * 5 4 3 7 7 H 1.08002 * 120.00349 * 207.53738 * 6 5 4 8 8 C 1.39948 * 120.00054 * 27.52935 * 6 5 4 9 9 N 1.30875 * 119.99806 * 13.44421 * 8 6 5 10 10 Si 1.86802 * 120.00183 * 193.44096 * 8 6 5 11 11 H 1.48493 * 109.47118 * 60.00171 * 10 8 6 12 12 H 1.48510 * 109.46969 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46873 * 300.00116 * 10 8 6 14 14 C 1.41707 * 118.58633 * 0.49857 * 5 4 3 15 15 N 1.38097 * 119.90398 * 179.77756 * 14 5 4 16 16 C 1.46990 * 111.00126 * 112.82470 * 15 14 5 17 17 C 1.52995 * 109.23520 * 183.40325 * 16 15 14 18 18 N 1.47027 * 109.52757 * 301.41851 * 17 16 15 19 19 C 1.47024 * 110.48396 * 182.53726 * 18 17 16 20 20 C 1.52925 * 109.54704 * 177.47032 * 19 18 17 21 21 N 1.46994 * 109.21247 * 58.60834 * 20 19 18 22 22 C 1.46904 * 110.73155 * 300.33107 * 21 20 19 23 23 C 1.46928 * 110.97405 * 58.97702 * 18 17 16 24 24 H 1.09001 * 109.52016 * 61.51462 * 23 18 17 25 25 C 1.46911 * 110.99438 * 236.43586 * 15 14 5 26 26 N 1.31966 * 119.27959 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47235 * 270.02292 * 1 2 3 28 28 H 1.08997 * 109.47187 * 30.02517 * 1 2 3 29 29 H 1.09004 * 109.47246 * 150.02807 * 1 2 3 30 30 H 1.07997 * 120.18637 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.85980 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99836 * 180.02562 * 9 8 6 33 33 H 1.08992 * 109.50908 * 303.33152 * 16 15 14 34 34 H 1.08999 * 109.50685 * 63.47672 * 16 15 14 35 35 H 1.08996 * 109.46173 * 61.43601 * 17 16 15 36 36 H 1.08996 * 109.46195 * 181.40599 * 17 16 15 37 37 H 1.09002 * 109.45935 * 297.51485 * 19 18 17 38 38 H 1.09004 * 109.45723 * 57.47131 * 19 18 17 39 39 H 1.08996 * 109.52588 * 298.68844 * 20 19 18 40 40 H 1.08997 * 109.54987 * 178.54927 * 20 19 18 41 41 H 1.00903 * 110.99844 * 176.56754 * 21 20 19 42 42 H 1.08997 * 109.45964 * 299.43796 * 22 21 20 43 43 H 1.09003 * 109.46010 * 179.47987 * 22 21 20 44 44 H 1.08995 * 109.46491 * 296.79774 * 25 15 14 45 45 H 1.08995 * 109.45761 * 56.77708 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2182 0.0005 5 6 4.2409 -0.0194 0.0067 6 6 5.6501 -0.0705 0.0128 7 1 6.1616 -0.9200 -0.4152 8 6 6.3859 0.9797 0.5733 9 7 5.7871 1.8734 1.3188 10 14 8.2227 1.1060 0.2576 11 1 8.4664 1.2360 -1.2014 12 1 8.7647 2.2978 0.9586 13 1 8.8973 -0.1156 0.7652 14 6 3.4737 -1.2108 0.0012 15 7 4.1074 -2.4378 0.0024 16 6 3.8702 -3.1520 1.2650 17 6 4.6570 -4.4641 1.2574 18 7 4.2373 -5.2823 0.1102 19 6 4.9375 -6.5751 0.1166 20 6 4.4395 -7.4325 -1.0477 21 7 4.6779 -6.7188 -2.3105 22 6 3.9716 -5.4307 -2.3212 23 6 4.4610 -4.5687 -1.1546 24 1 5.5246 -4.3612 -1.2724 25 6 3.6807 -3.2517 -1.1438 26 7 2.1524 -1.1511 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3634 -0.8903 -0.5134 30 1 1.6364 2.1399 -0.0004 31 1 4.1135 2.1487 0.0010 32 1 6.2971 2.6015 1.7070 33 1 4.2003 -2.5344 2.1002 34 1 2.8063 -3.3661 1.3677 35 1 5.7225 -4.2481 1.1790 36 1 4.4641 -5.0086 2.1817 37 1 6.0096 -6.4079 0.0123 38 1 4.7402 -7.0902 1.0568 39 1 3.3721 -7.6201 -0.9315 40 1 4.9769 -8.3807 -1.0583 41 1 4.4099 -7.2847 -3.1017 42 1 2.9001 -5.6033 -2.2207 43 1 4.1697 -4.9158 -3.2613 44 1 2.6143 -3.4620 -1.0630 45 1 3.8745 -2.7072 -2.0679 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164401845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:44 Heat of formation + Delta-G solvation = 31.031046 kcal Electronic energy + Delta-G solvation = -25634.717632 eV Core-core repulsion = 22264.692551 eV Total energy + Delta-G solvation = -3370.025081 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31009 -40.09696 -37.61866 -36.04714 -35.15347 -33.10610 -32.64303 -31.72585 -30.31777 -29.47377 -26.75856 -25.76284 -25.35970 -23.89122 -23.04587 -22.26961 -21.12707 -20.58510 -19.15983 -17.84051 -17.50021 -17.33602 -16.35837 -16.26636 -16.11793 -15.79010 -15.61867 -15.43750 -15.07248 -14.63292 -14.56570 -14.49455 -14.24527 -13.76701 -13.42315 -13.21636 -13.10307 -13.04986 -12.94480 -12.65895 -12.60776 -12.49512 -12.38906 -12.17046 -12.10231 -11.77559 -11.60480 -11.39279 -11.14136 -10.24444 -10.00174 -9.56472 -9.33456 -9.26211 -9.16222 -8.62511 -6.31949 0.73509 1.02862 1.38452 1.49020 1.53120 2.20168 2.73225 2.83424 2.96984 3.30314 3.60086 3.84484 3.90665 4.07210 4.09965 4.24039 4.27718 4.36950 4.42116 4.44302 4.47095 4.51238 4.60500 4.63690 4.74609 4.77167 4.82138 4.92799 4.94676 4.96674 4.99225 5.00263 5.09973 5.15385 5.23190 5.30454 5.34162 5.74775 5.83590 5.86179 5.97759 6.11197 6.14758 6.22731 6.40627 6.49861 6.71444 6.81581 7.08644 7.72738 8.29263 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.005519 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.479077 B = 5072.036147 C = 6604.242535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.014 4.014 3 C -0.150 4.150 4 C -0.152 4.152 5 C 0.061 3.939 6 C -0.443 4.443 7 H 0.080 0.920 8 C 0.034 3.966 9 N -0.824 5.824 10 Si 0.981 3.019 11 H -0.260 1.260 12 H -0.267 1.267 13 H -0.263 1.263 14 C 0.149 3.851 15 N -0.462 5.462 16 C 0.077 3.923 17 C 0.070 3.930 18 N -0.539 5.539 19 C 0.053 3.947 20 C 0.062 3.938 21 N -0.694 5.694 22 C 0.074 3.926 23 C 0.100 3.900 24 H 0.037 0.963 25 C 0.083 3.917 26 N -0.500 5.500 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.290 0.710 33 H 0.054 0.946 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.100 0.900 37 H 0.033 0.967 38 H 0.096 0.904 39 H 0.038 0.962 40 H 0.103 0.897 41 H 0.358 0.642 42 H 0.036 0.964 43 H 0.085 0.915 44 H 0.031 0.969 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.194 -12.033 -3.130 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.155 4.155 3 C -0.170 4.170 4 C -0.178 4.178 5 C 0.056 3.944 6 C -0.472 4.472 7 H 0.098 0.902 8 C -0.181 4.181 9 N -0.450 5.450 10 Si 0.802 3.198 11 H -0.185 1.185 12 H -0.191 1.191 13 H -0.188 1.188 14 C -0.083 4.083 15 N -0.184 5.184 16 C -0.051 4.051 17 C -0.058 4.058 18 N -0.265 5.265 19 C -0.075 4.075 20 C -0.067 4.067 21 N -0.327 5.327 22 C -0.057 4.057 23 C -0.010 4.010 24 H 0.055 0.945 25 C -0.046 4.046 26 N -0.212 5.212 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.121 0.879 41 H 0.177 0.823 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.049 0.951 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.024 -12.339 -2.767 12.687 hybrid contribution 0.303 1.192 0.048 1.231 sum -0.721 -11.147 -2.719 11.496 Atomic orbital electron populations 1.20316 0.88396 1.02155 1.01559 1.20849 0.96875 0.87856 1.09907 1.21740 0.94742 0.98440 1.02124 1.21674 0.93472 0.98195 1.04503 1.18437 0.94928 0.90679 0.90395 1.19537 0.91150 1.04009 1.32540 0.90219 1.26788 1.05711 0.93552 0.92062 1.69844 1.40519 1.11801 1.22806 0.85257 0.76073 0.78781 0.79678 1.18457 1.19091 1.18752 1.19594 0.86563 0.90656 1.11443 1.59634 1.54951 1.00921 1.02911 1.21946 0.97799 0.93904 0.91461 1.22068 0.96897 0.92320 0.94535 1.62422 1.57547 1.04524 1.02026 1.22262 0.95913 0.89394 0.99933 1.22023 0.99548 0.96750 0.88387 1.60481 1.61199 1.05381 1.05643 1.21828 0.95777 0.90750 0.97310 1.21553 0.97408 0.91903 0.90129 0.94543 1.21920 0.96981 0.92453 0.93223 1.66910 1.11042 1.30972 1.12273 0.92108 0.90347 0.92487 0.85609 0.86610 0.89969 0.92755 0.95364 0.94863 0.88229 0.94908 0.88605 0.94376 0.87854 0.82292 0.94586 0.89625 0.95075 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.31 10.15 71.23 0.72 -1.59 16 2 C -0.01 -0.65 6.79 42.64 0.29 -0.36 16 3 C -0.15 -6.98 9.69 22.32 0.22 -6.77 16 4 C -0.15 -7.96 8.77 22.89 0.20 -7.76 16 5 C 0.06 3.35 5.58 -21.06 -0.12 3.23 16 6 C -0.44 -23.71 8.68 23.36 0.20 -23.50 16 7 H 0.08 4.28 7.63 -2.91 -0.02 4.26 16 8 C 0.03 1.68 5.23 85.25 0.45 2.13 16 9 N -0.82 -42.15 10.95 21.83 0.24 -41.91 16 10 Si 0.98 38.22 29.58 68.60 2.03 40.24 16 11 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 12 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 13 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 14 C 0.15 7.61 5.36 134.05 0.72 8.33 16 15 N -0.46 -21.01 3.92 -699.80 -2.74 -23.75 16 16 C 0.08 3.15 5.47 86.28 0.47 3.63 16 17 C 0.07 2.29 5.58 86.28 0.48 2.77 16 18 N -0.54 -16.44 4.70 -870.06 -4.09 -20.54 16 19 C 0.05 1.24 5.58 86.25 0.48 1.72 16 20 C 0.06 1.21 6.72 86.26 0.58 1.79 16 21 N -0.69 -14.94 6.91 -513.64 -3.55 -18.49 16 22 C 0.07 1.93 5.96 86.33 0.51 2.45 16 23 C 0.10 3.28 2.46 44.97 0.11 3.39 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 C 0.08 3.30 4.63 86.33 0.40 3.70 16 26 N -0.50 -24.67 9.50 -179.57 -1.71 -26.37 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 29 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 31 H 0.12 6.21 6.33 -2.91 -0.02 6.19 16 32 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 33 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 34 H 0.03 1.22 8.05 -2.39 -0.02 1.20 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.36 5.80 8.90 -89.69 -0.80 5.00 16 42 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.03 1.32 7.87 -2.39 -0.02 1.30 16 45 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 Total: -1.00 -61.93 352.54 -3.92 -65.85 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.18 Total: 31.80 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.72 Total: -6.85 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -11.85 Total: -131.05 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.24 kcal Total: -61.93 -3.92 -65.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164401845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.885 kcal (2) G-P(sol) polarization free energy of solvation -61.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds