Wall clock time and date at job start Tue Mar 31 2020 08:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31763 * 119.05212 * 2 1 4 4 C 1.32685 * 121.00991 * 179.97438 * 3 2 1 5 5 C 1.37941 * 119.05606 * 0.02562 * 4 3 2 6 6 C 1.39575 * 118.53980 * 359.95223 * 5 4 3 7 7 N 1.38542 * 120.56190 * 179.97438 * 6 5 4 8 8 C 1.46963 * 111.00074 * 238.93446 * 7 6 5 9 9 C 1.53051 * 109.36529 * 176.81330 * 8 7 6 10 10 N 1.46951 * 109.36611 * 58.39913 * 9 8 7 11 11 C 1.46895 * 111.00340 * 176.81425 * 10 9 8 12 12 C 1.50710 * 109.47406 * 58.98417 * 11 10 9 13 13 H 1.07999 * 119.99047 * 5.10472 * 12 11 10 14 14 C 1.37878 * 119.99961 * 185.10768 * 12 11 10 15 15 N 1.31512 * 119.99869 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99458 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46988 * 59.99824 * 16 14 12 18 18 H 1.48501 * 109.46745 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47231 * 299.99668 * 16 14 12 20 20 C 1.46963 * 110.88334 * 300.67858 * 10 9 8 21 21 C 1.46958 * 111.00313 * 115.13250 * 7 6 5 22 22 N 1.31756 * 119.04919 * 179.97438 * 2 1 3 23 23 C 1.51051 * 109.97368 * 179.97438 * 5 4 3 24 24 C 1.54438 * 105.12314 * 343.00344 * 23 5 4 25 25 C 1.51196 * 131.18448 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47412 * 90.00003 * 1 2 3 27 27 H 1.09002 * 109.47346 * 210.00131 * 1 2 3 28 28 H 1.09003 * 109.46834 * 330.00249 * 1 2 3 29 29 H 1.09004 * 109.48448 * 296.77702 * 8 7 6 30 30 H 1.08994 * 109.48818 * 56.84275 * 8 7 6 31 31 H 1.09004 * 109.49033 * 298.43238 * 9 8 7 32 32 H 1.09001 * 109.50598 * 178.37949 * 9 8 7 33 33 H 1.08996 * 109.47624 * 178.98538 * 11 10 9 34 34 H 1.09001 * 109.46973 * 298.99067 * 11 10 9 35 35 H 0.96999 * 119.99272 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.48587 * 299.35644 * 20 10 9 37 37 H 1.08994 * 109.49063 * 179.28835 * 20 10 9 38 38 H 1.09000 * 109.49070 * 303.15805 * 21 7 6 39 39 H 1.09001 * 109.48555 * 63.19546 * 21 7 6 40 40 H 1.09005 * 110.31122 * 101.90827 * 23 5 4 41 41 H 1.08998 * 110.31680 * 224.09293 * 23 5 4 42 42 H 1.08994 * 110.82332 * 144.26322 * 24 23 5 43 43 H 1.08999 * 110.82009 * 267.82359 * 24 23 5 44 44 H 1.09003 * 110.30369 * 315.97469 * 25 4 3 45 45 H 1.08997 * 110.30429 * 78.12522 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1468 1.1518 0.0000 4 6 3.4729 1.1972 0.0005 5 6 4.1836 0.0150 0.0005 6 6 3.4763 -1.1883 0.0010 7 7 4.1478 -2.4001 0.0005 8 6 3.7830 -3.2039 -1.1745 9 6 4.6030 -4.4962 -1.1798 10 7 4.3494 -5.2393 0.0623 11 6 5.0614 -6.5242 0.0619 12 6 6.5411 -6.2786 -0.0848 13 1 6.9232 -5.2685 -0.0862 14 6 7.4069 -7.3435 -0.2170 15 7 6.9415 -8.5735 -0.2148 16 14 9.2410 -7.0390 -0.3981 17 1 9.7429 -6.3148 0.7974 18 1 9.9486 -8.3387 -0.5222 19 1 9.4896 -6.2216 -1.6126 20 6 4.7143 -4.4356 1.2374 21 6 3.8943 -3.1433 1.2427 22 7 2.1467 -1.1518 0.0005 23 6 5.6661 0.3042 0.0005 24 6 5.7886 1.7808 -0.4353 25 6 4.4290 2.3684 0.0011 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 2.7212 -3.4471 -1.1332 30 1 3.9916 -2.6371 -2.0818 31 1 5.6635 -4.2538 -1.2485 32 1 4.3136 -5.1074 -2.0347 33 1 4.8709 -7.0456 0.9999 34 1 4.7102 -7.1339 -0.7706 35 1 7.5507 -9.3227 -0.3075 36 1 5.7761 -4.1924 1.1961 37 1 4.5058 -5.0024 2.1447 38 1 4.1841 -2.5323 2.0976 39 1 2.8338 -3.3854 1.3116 40 1 6.0779 0.1696 1.0008 41 1 6.1782 -0.3439 -0.7108 42 1 6.6090 2.2723 0.0874 43 1 5.9148 1.8568 -1.5153 44 1 4.0990 3.1264 -0.7093 45 1 4.5049 2.7942 1.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:09 Heat of formation + Delta-G solvation = 41.678360 kcal Electronic energy + Delta-G solvation = -25077.057657 eV Core-core repulsion = 21707.494279 eV Total energy + Delta-G solvation = -3369.563379 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.62040 -40.25943 -38.05386 -37.17648 -34.71351 -33.44985 -32.30201 -31.96914 -30.01292 -29.38441 -27.85753 -26.94784 -24.56281 -24.32446 -23.17471 -22.71169 -21.64986 -20.81997 -19.11865 -18.37130 -17.95042 -17.07647 -16.77496 -16.17277 -15.88790 -15.80035 -15.54038 -15.38323 -15.24318 -14.82508 -14.76762 -13.96637 -13.83770 -13.80640 -13.60530 -13.54873 -13.34859 -13.00718 -12.91633 -12.82487 -12.57660 -12.31292 -12.25162 -12.11143 -12.06159 -11.90963 -11.86846 -11.81289 -11.54568 -11.23440 -10.59824 -10.36324 -9.92322 -9.82342 -9.06733 -8.15041 -6.34381 -0.18306 -0.05513 1.38741 1.40028 1.48248 2.38432 2.40485 2.55867 2.71004 3.05274 3.10378 3.28485 3.56378 3.66578 3.82960 3.94865 4.08776 4.15964 4.21376 4.32542 4.38046 4.42302 4.45649 4.55472 4.66387 4.69939 4.70454 4.72819 4.77817 4.88621 4.91868 4.99255 5.03893 5.11123 5.15646 5.18995 5.20694 5.30520 5.32487 5.38569 5.65238 5.73667 5.93607 6.00075 6.08647 6.24429 6.44687 6.84990 7.05595 7.37125 8.87833 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.019688 B = 0.003802 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.873948 B = 7362.937496 C = 8425.118792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.311 3.689 3 N -0.531 5.531 4 C 0.160 3.840 5 C -0.189 4.189 6 C 0.339 3.661 7 N -0.486 5.486 8 C 0.080 3.920 9 C 0.073 3.927 10 N -0.544 5.544 11 C 0.202 3.798 12 C -0.556 4.556 13 H 0.059 0.941 14 C 0.013 3.987 15 N -0.927 5.927 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.071 3.929 21 C 0.081 3.919 22 N -0.564 5.564 23 C -0.067 4.067 24 C -0.108 4.108 25 C -0.066 4.066 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.005 0.995 34 H 0.008 0.992 35 H 0.265 0.735 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 23.620 0.422 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.043 3.957 3 N -0.247 5.247 4 C 0.014 3.986 5 C -0.195 4.195 6 C 0.103 3.897 7 N -0.210 5.210 8 C -0.047 4.047 9 C -0.056 4.056 10 N -0.268 5.268 11 C 0.075 3.925 12 C -0.595 4.595 13 H 0.077 0.923 14 C -0.186 4.186 15 N -0.567 5.567 16 Si 0.782 3.218 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.058 4.058 21 C -0.046 4.046 22 N -0.282 5.282 23 C -0.106 4.106 24 C -0.146 4.146 25 C -0.104 4.104 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.130 0.870 43 H 0.100 0.900 44 H 0.122 0.878 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.997 23.387 0.413 24.415 hybrid contribution 1.666 -0.973 -0.106 1.932 sum -5.331 22.414 0.307 23.042 Atomic orbital electron populations 1.20626 0.83490 1.04767 1.04718 1.23640 0.99217 0.82253 0.90638 1.67634 1.09953 1.30550 1.16541 1.22898 0.89412 0.97135 0.89192 1.22156 1.00794 0.92886 1.03626 1.20006 0.86742 0.91664 0.91242 1.60311 1.53478 1.02625 1.04571 1.22059 0.98271 0.92823 0.91540 1.21866 0.97879 0.92802 0.93029 1.62607 1.56979 1.04957 1.02249 1.19393 0.90956 0.86646 0.95498 1.21926 0.93992 0.92900 1.50643 0.92338 1.25806 1.03537 0.94756 0.94546 1.70061 1.36833 0.99023 1.50754 0.85619 0.79693 0.77448 0.79011 1.19420 1.20826 1.19436 1.21908 0.97380 0.92457 0.94083 1.22070 0.98777 0.93527 0.90233 1.68492 1.10346 1.32171 1.17225 1.20885 0.88478 0.98089 1.03101 1.22413 0.96621 0.92913 1.02632 1.21210 0.90929 0.93300 1.04919 0.88615 0.89520 0.88281 0.93611 0.90161 0.94784 0.91302 0.97661 0.97359 0.92605 0.94873 0.90930 0.89810 0.93754 0.89300 0.90605 0.86954 0.90012 0.87842 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.31 71.23 0.73 -0.70 16 2 C 0.31 8.29 7.64 138.77 1.06 9.35 16 3 N -0.53 -13.75 10.33 -175.86 -1.82 -15.57 16 4 C 0.16 3.71 7.37 42.52 0.31 4.02 16 5 C -0.19 -4.85 6.15 -19.50 -0.12 -4.97 16 6 C 0.34 10.38 5.35 133.14 0.71 11.10 16 7 N -0.49 -16.00 4.66 -700.83 -3.27 -19.26 16 8 C 0.08 2.75 5.42 86.31 0.47 3.22 16 9 C 0.07 2.95 5.24 86.31 0.45 3.40 16 10 N -0.54 -24.12 4.92 -900.27 -4.43 -28.54 16 11 C 0.20 10.72 5.14 85.56 0.44 11.16 16 12 C -0.56 -30.70 7.66 25.60 0.20 -30.51 16 13 H 0.06 3.19 5.82 -2.91 -0.02 3.17 16 14 C 0.01 0.73 5.46 84.66 0.46 1.19 16 15 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 16 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C 0.07 2.79 5.32 86.31 0.46 3.25 16 21 C 0.08 2.72 5.47 86.31 0.47 3.19 16 22 N -0.56 -17.37 9.72 -185.48 -1.80 -19.18 16 23 C -0.07 -1.31 6.74 30.45 0.21 -1.11 16 24 C -0.11 -1.30 7.09 31.56 0.22 -1.07 16 25 C -0.07 -0.90 6.77 30.48 0.21 -0.69 16 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.65 7.94 -2.39 -0.02 1.63 16 30 H 0.08 2.53 8.13 -2.39 -0.02 2.51 16 31 H 0.03 1.49 6.62 -2.38 -0.02 1.48 16 32 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.01 0.30 8.12 -2.39 -0.02 0.28 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.03 1.42 6.78 -2.39 -0.02 1.41 16 37 H 0.07 2.84 8.12 -2.39 -0.02 2.82 16 38 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 39 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 40 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.00 356.46 -1.75 -68.75 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.97 Total: 12.23 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 6.28 Total: 10.82 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -11.03 Total: -137.46 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.00 -1.75 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.424 kcal (2) G-P(sol) polarization free energy of solvation -66.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds