Wall clock time and date at job start Tue Mar 31 2020 09:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36352 * 120.07774 * 2 1 4 4 C 1.39553 * 120.16079 * 180.25703 * 3 2 1 5 5 N 1.38857 * 119.84632 * 179.76179 * 4 3 2 6 6 C 1.46495 * 120.00088 * 179.71900 * 5 4 3 7 7 C 1.53006 * 109.47200 * 179.97438 * 6 5 4 8 8 C 1.52991 * 109.47129 * 180.02562 * 7 6 5 9 9 H 1.08990 * 109.50703 * 55.08138 * 8 7 6 10 10 C 1.53119 * 109.53348 * 175.18078 * 8 7 6 11 11 C 1.53121 * 109.16257 * 177.61140 * 10 8 7 12 12 C 1.53042 * 109.27669 * 302.34741 * 11 10 8 13 13 N 1.46837 * 109.52533 * 59.17906 * 12 11 10 14 14 C 1.46899 * 111.00340 * 174.16513 * 13 12 11 15 15 C 1.46853 * 111.19818 * 298.25391 * 13 12 11 16 16 C 1.39587 * 120.31120 * 359.47913 * 4 3 2 17 17 C 1.36325 * 120.16146 * 0.25560 * 16 4 3 18 18 C 1.40856 * 120.08232 * 179.73923 * 2 1 3 19 19 C 1.41143 * 120.15866 * 359.97438 * 18 2 1 20 20 H 1.07992 * 119.99988 * 329.63215 * 19 18 2 21 21 C 1.39867 * 119.99984 * 149.62642 * 19 18 2 22 22 N 1.30905 * 120.00098 * 162.16593 * 21 19 18 23 23 Si 1.86802 * 120.00084 * 342.16550 * 21 19 18 24 24 H 1.48507 * 109.47225 * 95.39284 * 23 21 19 25 25 H 1.48504 * 109.47120 * 215.39277 * 23 21 19 26 26 H 1.48497 * 109.47344 * 335.39391 * 23 21 19 27 27 H 1.08996 * 109.46786 * 270.25574 * 1 2 3 28 28 H 1.08999 * 109.47233 * 30.26395 * 1 2 3 29 29 H 1.09004 * 109.46532 * 150.26419 * 1 2 3 30 30 H 1.07999 * 119.92450 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99346 * 359.72024 * 5 4 3 32 32 H 1.09000 * 109.46957 * 60.00204 * 6 5 4 33 33 H 1.08995 * 109.47524 * 300.00161 * 6 5 4 34 34 H 1.08997 * 109.46823 * 59.99851 * 7 6 5 35 35 H 1.09005 * 109.47107 * 300.00742 * 7 6 5 36 36 H 1.08998 * 109.52204 * 297.51445 * 10 8 7 37 37 H 1.08999 * 109.52385 * 57.64678 * 10 8 7 38 38 H 1.09002 * 109.49852 * 62.28168 * 11 10 8 39 39 H 1.08996 * 109.50704 * 182.35860 * 11 10 8 40 40 H 1.09001 * 109.45747 * 299.15786 * 12 11 10 41 41 H 1.09004 * 109.45688 * 179.19562 * 12 11 10 42 42 H 1.08994 * 109.47616 * 184.21139 * 14 13 12 43 43 H 1.09010 * 109.46550 * 304.20726 * 14 13 12 44 44 H 1.08997 * 109.47674 * 64.20065 * 14 13 12 45 45 H 1.08996 * 109.46815 * 181.75763 * 15 13 12 46 46 H 1.08999 * 109.46327 * 301.73285 * 15 13 12 47 47 H 1.07999 * 119.91550 * 180.28358 * 16 4 3 48 48 H 1.08001 * 120.07877 * 180.02562 * 17 16 4 49 49 H 0.96997 * 120.00607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5860 1.1819 -0.0054 5 7 4.2753 2.3873 -0.0104 6 6 5.7402 2.3934 -0.0099 7 6 6.2442 3.8381 -0.0166 8 6 7.7741 3.8444 -0.0167 9 1 8.1405 3.2540 -0.8563 10 6 8.2801 5.2839 -0.1446 11 6 9.8101 5.2862 -0.0838 12 6 10.2646 4.6428 1.2284 13 7 9.7559 3.2674 1.3025 14 6 10.2866 2.5727 2.4831 15 6 8.2876 3.2430 1.2936 16 6 4.2922 -0.0221 0.0001 17 6 3.6221 -1.2092 0.0056 18 6 2.2131 -1.2188 0.0055 19 6 1.5125 -2.4441 0.0117 20 1 0.5442 -2.5101 0.4852 21 6 2.0724 -3.5728 -0.5956 22 7 1.6190 -4.7657 -0.3040 23 14 3.4672 -3.3781 -1.8229 24 1 4.7671 -3.5555 -1.1272 25 1 3.3334 -4.4015 -2.8907 26 1 3.4098 -2.0225 -2.4265 27 1 -0.3633 0.0046 1.0276 28 1 -0.3634 0.8876 -0.5179 29 1 -0.3632 -0.8924 -0.5098 30 1 1.6505 2.1152 -0.0004 31 1 3.7867 3.2253 -0.0142 32 1 6.1060 1.8773 -0.8975 33 1 6.1054 1.8850 0.8824 34 1 5.8784 4.3546 0.8708 35 1 5.8790 4.3462 -0.9091 36 1 7.9528 5.7018 -1.0966 37 1 7.8813 5.8843 0.6731 38 1 10.2085 4.7183 -0.9246 39 1 10.1748 6.3122 -0.1323 40 1 9.8772 5.2192 2.0685 41 1 11.3538 4.6300 1.2683 42 1 9.9544 1.5347 2.4738 43 1 11.3761 2.6057 2.4648 44 1 9.9235 3.0624 3.3867 45 1 7.9409 2.2133 1.3810 46 1 7.9096 3.8259 2.1335 47 1 5.3722 -0.0130 0.0005 48 1 4.1699 -2.1400 0.0102 49 1 2.0075 -5.5485 -0.7248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165290461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:27 Heat of formation + Delta-G solvation = 2.980750 kcal Electronic energy + Delta-G solvation = -24360.010465 eV Core-core repulsion = 21092.309375 eV Total energy + Delta-G solvation = -3267.701089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.53621 -38.36489 -36.05160 -34.30136 -33.14376 -32.30914 -31.19703 -29.74649 -27.62688 -27.03398 -26.19186 -24.08285 -23.51516 -22.70375 -21.61755 -20.89981 -19.93462 -19.08507 -17.29993 -16.28423 -16.02416 -15.79538 -15.06303 -14.90893 -14.90522 -14.58860 -14.13415 -13.83042 -13.79295 -13.27912 -13.14596 -12.77280 -12.59938 -12.49889 -12.42894 -12.24386 -12.20630 -12.02352 -11.62213 -11.43012 -11.37168 -11.22371 -11.04101 -10.83174 -10.72009 -10.65888 -10.49330 -10.33691 -10.15575 -9.77158 -9.39787 -9.09957 -8.59719 -8.58464 -7.55331 -6.72861 -6.54312 -4.12299 2.70346 2.84982 3.23122 3.32466 3.44930 3.65171 4.12728 4.14130 4.49331 4.57709 4.63683 4.66391 4.79981 5.05860 5.13331 5.16688 5.20083 5.23000 5.32041 5.40676 5.48929 5.51368 5.53024 5.62068 5.65604 5.72647 5.75923 5.83795 5.92186 6.01441 6.04856 6.08595 6.18620 6.27382 6.34254 6.48688 6.65506 6.71265 6.80780 6.83385 6.92128 7.00581 7.19348 7.30653 7.52664 7.68807 7.96551 8.14048 8.35974 8.53271 8.61625 8.89368 9.03384 10.31232 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002978 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.659957 B = 9399.310712 C =10227.347944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.139 4.139 3 C -0.146 4.146 4 C 0.097 3.903 5 N -0.762 5.762 6 C 0.136 3.864 7 C -0.123 4.123 8 C -0.080 4.080 9 H 0.082 0.918 10 C -0.116 4.116 11 C -0.117 4.117 12 C 0.055 3.945 13 N -0.544 5.544 14 C 0.024 3.976 15 C 0.057 3.943 16 C -0.149 4.149 17 C -0.195 4.195 18 C 0.060 3.940 19 C -0.451 4.451 20 H 0.088 0.912 21 C 0.083 3.917 22 N -0.825 5.825 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.246 1.246 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.385 0.615 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.024 0.976 45 H 0.081 0.919 46 H 0.033 0.967 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.523 17.815 1.411 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C -0.168 4.168 4 C 0.000 4.000 5 N -0.397 5.397 6 C 0.011 3.989 7 C -0.161 4.161 8 C -0.100 4.100 9 H 0.100 0.900 10 C -0.153 4.153 11 C -0.155 4.155 12 C -0.073 4.073 13 N -0.269 5.269 14 C -0.124 4.124 15 C -0.070 4.070 16 C -0.171 4.171 17 C -0.214 4.214 18 C 0.056 3.944 19 C -0.481 4.481 20 H 0.106 0.894 21 C -0.133 4.133 22 N -0.452 5.452 23 Si 0.733 3.267 24 H -0.201 1.201 25 H -0.222 1.222 26 H -0.170 1.170 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.110 0.890 48 H 0.117 0.883 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.824 17.189 0.993 22.720 hybrid contribution 0.290 0.579 0.280 0.706 sum 15.114 17.769 1.273 23.362 Atomic orbital electron populations 1.20469 0.93040 1.00946 1.00153 1.19343 0.94574 0.92334 1.07875 1.19805 0.91577 0.96730 1.08699 1.17288 0.90633 0.85217 1.06903 1.43880 1.03594 1.05118 1.87149 1.21081 0.82101 0.95420 1.00309 1.21770 0.94680 0.97225 1.02428 1.21113 0.94172 0.96386 0.98287 0.89990 1.21632 0.95417 0.96395 1.01905 1.21584 0.95946 1.00109 0.97869 1.22099 0.99692 0.88433 0.97122 1.61902 1.08584 1.15941 1.40432 1.22358 1.00310 0.99285 0.90419 1.22249 0.86591 1.01502 0.96696 1.19944 0.97270 0.91749 1.08109 1.20621 0.94646 0.95890 1.10281 1.17511 0.91044 0.92809 0.93009 1.19249 1.05426 0.91305 1.32115 0.89360 1.26042 0.96523 0.94367 0.96347 1.69736 1.39661 0.98947 1.36844 0.86412 0.80674 0.79383 0.80268 1.20063 1.22230 1.16952 0.93547 0.94210 0.91402 0.88966 0.78245 0.93455 0.93409 0.91732 0.91283 0.91628 0.92292 0.91011 0.91610 0.95130 0.90968 0.91069 0.91467 0.95767 0.90104 0.94897 0.88985 0.88285 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.40 36.01 0.34 -1.49 16 2 C -0.14 -3.26 5.90 -104.31 -0.62 -3.87 16 3 C -0.15 -3.10 9.46 -39.77 -0.38 -3.48 16 4 C 0.10 2.00 6.67 -83.69 -0.56 1.44 16 5 N -0.76 -12.40 5.70 -58.50 -0.33 -12.73 16 6 C 0.14 1.87 4.64 -4.04 -0.02 1.85 16 7 C -0.12 -1.26 4.80 -26.73 -0.13 -1.39 16 8 C -0.08 -0.77 2.35 -90.54 -0.21 -0.98 16 9 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 10 C -0.12 -0.95 5.29 -26.61 -0.14 -1.09 16 11 C -0.12 -0.90 6.09 -26.65 -0.16 -1.06 16 12 C 0.05 0.45 5.46 -3.84 -0.02 0.43 16 13 N -0.54 -5.37 4.91 -242.96 -1.19 -6.57 16 14 C 0.02 0.21 9.59 60.06 0.58 0.79 16 15 C 0.06 0.59 4.48 -3.83 -0.02 0.57 16 16 C -0.15 -3.31 9.23 -39.77 -0.37 -3.68 16 17 C -0.19 -4.83 7.10 -39.26 -0.28 -5.11 16 18 C 0.06 1.55 5.09 -106.80 -0.54 1.00 16 19 C -0.45 -12.44 8.51 -37.87 -0.32 -12.76 16 20 H 0.09 2.53 7.23 -52.49 -0.38 2.15 16 21 C 0.08 2.26 5.40 -17.34 -0.09 2.16 16 22 N -0.83 -22.89 13.93 55.54 0.77 -22.12 16 23 Si 0.91 21.71 24.51 -169.99 -4.17 17.54 16 24 H -0.27 -6.41 6.71 56.52 0.38 -6.03 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.25 -6.07 6.86 56.52 0.39 -5.68 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 1.46 6.85 -51.93 -0.36 1.10 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.39 5.50 8.47 -40.82 -0.35 5.15 16 32 H 0.05 0.70 7.93 -51.93 -0.41 0.29 16 33 H 0.05 0.69 6.37 -51.93 -0.33 0.36 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.50 8.09 -51.92 -0.42 0.08 16 44 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.08 0.90 6.59 -51.93 -0.34 0.56 16 46 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 48 H 0.10 2.48 4.77 -52.49 -0.25 2.23 16 49 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -28.82 372.43 -10.94 -39.77 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.69 Total: 5.16 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -2.94 Total: -26.67 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.75 Total: -41.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.17 Total: 17.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.82 -10.94 -39.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165290461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.747 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds