Wall clock time and date at job start Tue Mar 31 2020 08:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99820 * 2 1 4 4 H 1.48505 * 109.47285 * 269.99954 * 3 2 1 5 5 H 1.48498 * 109.47155 * 30.00097 * 3 2 1 6 6 H 1.48508 * 109.47153 * 150.00415 * 3 2 1 7 7 C 1.37884 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46952 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47382 * 59.99864 * 11 10 9 13 13 N 1.46895 * 109.47248 * 60.00221 * 12 11 10 14 14 C 1.46897 * 111.00176 * 155.00106 * 13 12 11 15 15 C 1.53003 * 109.47175 * 180.02562 * 14 13 12 16 16 N 1.46897 * 109.47175 * 180.02562 * 15 14 13 17 17 C 1.48813 * 111.18681 * 52.66416 * 16 15 14 18 18 C 1.54933 * 103.35205 * 159.50572 * 17 16 15 19 19 C 1.54594 * 102.91997 * 322.69117 * 18 17 16 20 20 F 1.39902 * 110.30614 * 263.04172 * 19 18 17 21 21 F 1.39895 * 110.31112 * 140.87568 * 19 18 17 22 22 C 1.47905 * 111.00050 * 169.99751 * 16 15 14 23 23 C 1.53002 * 109.47123 * 299.99957 * 12 11 10 24 24 C 1.52997 * 109.46747 * 59.99867 * 9 7 2 25 25 H 0.96996 * 120.00410 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.46834 * 300.00277 * 9 7 2 27 27 H 1.09000 * 109.47348 * 60.00152 * 10 9 7 28 28 H 1.08998 * 109.47232 * 299.99493 * 10 9 7 29 29 H 1.09003 * 109.46996 * 299.99862 * 11 10 9 30 30 H 1.08996 * 109.47361 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.47342 * 180.02562 * 12 11 10 32 32 H 1.00906 * 111.00043 * 31.04426 * 13 12 11 33 33 H 1.09000 * 109.47205 * 60.00270 * 14 13 12 34 34 H 1.08995 * 109.47219 * 299.99900 * 14 13 12 35 35 H 1.09000 * 109.47560 * 59.99673 * 15 14 13 36 36 H 1.09011 * 109.47014 * 299.99776 * 15 14 13 37 37 H 1.08998 * 110.51915 * 41.07024 * 17 16 15 38 38 H 1.09009 * 110.83927 * 278.09443 * 17 16 15 39 39 H 1.08999 * 110.72416 * 204.32980 * 18 17 16 40 40 H 1.08999 * 110.72531 * 81.04521 * 18 17 16 41 41 H 1.09002 * 109.91668 * 94.80258 * 22 16 15 42 42 H 1.09002 * 109.91761 * 333.70433 * 22 16 15 43 43 H 1.09000 * 109.47283 * 179.97438 * 23 12 11 44 44 H 1.08998 * 109.47292 * 300.00469 * 23 12 11 45 45 H 1.08998 * 109.48062 * 299.99996 * 24 9 7 46 46 H 1.08998 * 109.47455 * 60.00488 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4993 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 0.6012 -5.0679 -1.2507 13 7 1.4460 -4.9897 -2.4498 14 6 0.7917 -5.6318 -3.5976 15 6 1.7001 -5.5310 -4.8246 16 7 1.0455 -6.1726 -5.9726 17 6 -0.3268 -5.6350 -6.1787 18 6 -0.6328 -5.9919 -7.6550 19 6 0.7316 -5.7829 -8.3511 20 9 0.7849 -4.5171 -8.9447 21 9 0.9453 -6.7792 -9.3097 22 6 1.7777 -5.8902 -7.2263 23 6 -0.3932 -3.9050 -1.2507 24 6 0.3710 -2.5799 -1.2494 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8535 -5.0451 0.8886 30 1 2.1887 -5.8155 -0.0016 31 1 0.0559 -6.0117 -1.2509 32 1 2.3547 -5.3939 -2.2790 33 1 -0.1543 -5.1310 -3.8035 34 1 0.6052 -6.6811 -3.3693 35 1 2.6460 -6.0320 -4.6186 36 1 1.8870 -4.4817 -5.0532 37 1 -0.3398 -4.5549 -6.0333 38 1 -1.0379 -6.1204 -5.5101 39 1 -1.3835 -5.3176 -8.0671 40 1 -0.9553 -7.0294 -7.7421 41 1 2.4724 -6.7021 -7.4415 42 1 2.3222 -4.9503 -7.1347 43 1 -1.0193 -3.9622 -2.1411 44 1 -1.0200 -3.9629 -0.3609 45 1 -0.3373 -1.7515 -1.2491 46 1 0.9973 -2.5220 -2.1397 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:54 Heat of formation + Delta-G solvation = -126.691386 kcal Electronic energy + Delta-G solvation = -25528.360261 eV Core-core repulsion = 21700.806636 eV Total energy + Delta-G solvation = -3827.553625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.01794 -48.14428 -40.11739 -39.40065 -36.17825 -34.37226 -32.59734 -31.30447 -30.72432 -29.72728 -27.40230 -26.14222 -24.12009 -23.09356 -22.46520 -22.16565 -21.68234 -19.71110 -18.78911 -18.33311 -18.01190 -17.27123 -16.66077 -16.62052 -16.42773 -16.02582 -15.67034 -15.43635 -15.11496 -15.01674 -14.69041 -14.48203 -14.33126 -14.06017 -13.98803 -13.74428 -13.37004 -13.20252 -12.95691 -12.83093 -12.70245 -12.64341 -12.57501 -12.47849 -12.21339 -12.08215 -11.86106 -11.72210 -11.64406 -11.54805 -11.09151 -10.65111 -10.36155 -10.23437 -9.66930 -9.11376 -8.01206 -6.14296 1.40904 1.41720 1.51383 2.38372 2.46470 2.77222 2.81738 3.20243 3.24316 3.36967 3.56970 3.94871 4.03289 4.08359 4.11905 4.16150 4.25629 4.34953 4.43224 4.57681 4.62301 4.66786 4.72365 4.78641 4.81579 4.86576 4.90471 4.96328 5.00444 5.01836 5.06843 5.18612 5.24342 5.38102 5.54462 5.57850 5.66776 5.72011 5.73919 5.87328 6.20587 6.27531 6.34835 6.53560 6.67493 7.00167 7.52635 9.01764 Molecular weight = 302.19amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.003162 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.485662 B = 8853.294767 C = 9767.216214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.047 0.953 9 C 0.048 3.952 10 C -0.093 4.093 11 C -0.112 4.112 12 C 0.106 3.894 13 N -0.686 5.686 14 C 0.069 3.931 15 C 0.054 3.946 16 N -0.507 5.507 17 C 0.029 3.971 18 C -0.153 4.153 19 C 0.268 3.732 20 F -0.207 7.207 21 F -0.199 7.199 22 C 0.000 4.000 23 C -0.100 4.100 24 C -0.083 4.083 25 H 0.257 0.743 26 H -0.018 1.018 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.345 0.655 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.040 0.960 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -16.400 -13.709 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.567 4.567 8 H 0.065 0.935 9 C 0.030 3.970 10 C -0.131 4.131 11 C -0.150 4.150 12 C -0.004 4.004 13 N -0.319 5.319 14 C -0.061 4.061 15 C -0.074 4.074 16 N -0.232 5.232 17 C -0.098 4.098 18 C -0.191 4.191 19 C 0.231 3.769 20 F -0.188 7.188 21 F -0.180 7.180 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.121 4.121 25 H 0.066 0.934 26 H 0.000 1.000 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.165 0.835 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.401 -16.199 -13.780 21.272 hybrid contribution 0.471 1.461 0.020 1.535 sum 0.071 -14.738 -13.761 20.164 Atomic orbital electron populations 1.70041 1.07049 1.26630 1.52009 1.25704 0.95619 1.02121 0.95289 0.85730 0.78852 0.80030 0.78065 1.20392 1.21063 1.19383 1.21664 0.92830 0.92692 1.49522 0.93508 1.18586 0.93113 0.92186 0.93144 1.21363 0.97762 0.94323 0.99638 1.21687 0.98619 0.97621 0.97048 1.21313 0.93594 0.96174 0.89273 1.60252 1.06031 1.61075 1.04582 1.21890 0.97284 0.97033 0.89860 1.22230 0.98201 0.97222 0.89776 1.65013 1.02466 1.54067 1.01675 1.23415 0.91479 0.99086 0.95853 1.23567 0.93853 1.06720 0.94922 1.22103 0.99852 0.71156 0.83762 1.93022 1.97570 1.41950 1.86244 1.93008 1.96181 1.61314 1.67496 1.23874 0.95924 1.04496 0.88623 1.21504 0.96940 0.96087 0.99305 1.21126 0.98165 0.94974 0.97860 0.93412 0.99957 0.94752 0.92524 0.92397 0.90502 0.93004 0.83526 0.91781 0.93725 0.89257 0.94551 0.93172 0.87116 0.87224 0.86204 0.86356 0.90709 0.93377 0.93954 0.94137 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.32 11.32 21.45 0.24 -54.08 16 2 C 0.01 0.60 5.30 84.66 0.45 1.05 16 3 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -29.84 8.56 25.60 0.22 -29.62 16 8 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.05 2.42 2.10 -11.54 -0.02 2.40 16 10 C -0.09 -3.73 4.98 30.59 0.15 -3.57 16 11 C -0.11 -3.46 5.30 30.59 0.16 -3.30 16 12 C 0.11 3.13 2.82 44.92 0.13 3.25 16 13 N -0.69 -18.40 4.83 -491.58 -2.37 -20.78 16 14 C 0.07 1.50 5.15 86.30 0.44 1.95 16 15 C 0.05 1.07 5.29 86.30 0.46 1.53 16 16 N -0.51 -9.06 5.40 -882.21 -4.77 -13.82 16 17 C 0.03 0.48 5.12 86.59 0.44 0.92 16 18 C -0.15 -2.18 6.66 31.80 0.21 -1.97 16 19 C 0.27 4.92 2.64 31.47 0.08 5.00 16 20 F -0.21 -4.62 17.07 44.97 0.77 -3.85 16 21 F -0.20 -4.00 17.08 44.97 0.77 -3.24 16 22 C 0.00 0.00 6.40 86.44 0.55 0.55 16 23 C -0.10 -3.73 5.53 30.58 0.17 -3.56 16 24 C -0.08 -3.95 4.82 30.58 0.15 -3.81 16 25 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 2.24 7.48 -2.39 -0.02 2.23 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 31 H 0.05 1.32 7.80 -2.39 -0.02 1.30 16 32 H 0.35 8.24 8.19 -89.69 -0.73 7.51 16 33 H 0.06 1.52 6.10 -2.39 -0.01 1.50 16 34 H 0.04 0.89 8.06 -2.39 -0.02 0.87 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 0.86 7.81 -2.38 -0.02 0.84 16 37 H 0.05 0.96 8.00 -2.39 -0.02 0.94 16 38 H 0.11 1.59 7.69 -2.38 -0.02 1.57 16 39 H 0.11 1.36 8.12 -2.39 -0.02 1.34 16 40 H 0.12 1.41 8.12 -2.39 -0.02 1.39 16 41 H 0.12 1.78 8.02 -2.39 -0.02 1.77 16 42 H 0.07 1.35 7.45 -2.39 -0.02 1.33 16 43 H 0.05 1.66 7.45 -2.39 -0.02 1.64 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.04 2.24 6.07 -2.39 -0.01 2.23 16 46 H 0.03 1.73 7.60 -2.39 -0.02 1.71 16 Total: -1.00 -63.24 356.09 0.49 -62.75 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.22 Total: 15.42 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 3.59 Total: -29.18 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -6.90 Total: -88.68 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 1.54 Total: -7.09 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.24 0.49 -62.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.941 kcal (2) G-P(sol) polarization free energy of solvation -63.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds