Wall clock time and date at job start Tue Mar 31 2020 08:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00084 * 2 1 4 4 H 1.48501 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47311 * 300.00104 * 3 2 1 6 6 H 1.48502 * 109.47253 * 60.00348 * 3 2 1 7 7 C 1.37874 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46892 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46726 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46916 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.47069 * 179.97438 * 12 11 10 14 14 C 1.42906 * 114.00211 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.46842 * 330.00387 * 14 13 12 16 16 C 1.52992 * 109.46831 * 90.00014 * 14 13 12 17 17 C 1.53002 * 109.47106 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47128 * 300.00123 * 17 16 14 19 19 C 1.52997 * 109.46978 * 59.99726 * 18 17 16 20 20 C 1.52997 * 109.47321 * 210.00398 * 14 13 12 21 21 H 1.09002 * 109.47153 * 299.99798 * 20 14 13 22 22 C 1.50701 * 109.47212 * 59.99796 * 20 14 13 23 23 C 1.38236 * 119.99963 * 59.72884 * 22 20 14 24 24 C 1.38230 * 120.00046 * 179.76840 * 23 22 20 25 25 C 1.38230 * 119.99992 * 0.47613 * 24 23 22 26 26 C 1.38236 * 119.99998 * 359.80055 * 25 24 23 27 27 C 1.38229 * 120.00216 * 240.00128 * 22 20 14 28 28 H 0.96997 * 119.99803 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47455 * 59.99962 * 9 7 2 30 30 H 1.08997 * 109.46688 * 299.99075 * 9 7 2 31 31 H 1.08993 * 109.47044 * 59.99781 * 10 9 7 32 32 H 1.09002 * 109.46921 * 299.99833 * 10 9 7 33 33 H 1.09002 * 109.47280 * 60.00435 * 11 10 9 34 34 H 1.08993 * 109.47456 * 299.99640 * 11 10 9 35 35 H 1.09005 * 109.46968 * 60.00535 * 12 11 10 36 36 H 1.09001 * 109.47618 * 300.00352 * 12 11 10 37 37 H 1.09002 * 109.47103 * 60.00533 * 16 14 13 38 38 H 1.08996 * 109.47747 * 300.00121 * 16 14 13 39 39 H 1.08996 * 109.47407 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47596 * 60.00070 * 17 16 14 41 41 H 1.09002 * 109.47097 * 299.99925 * 18 17 16 42 42 H 1.08998 * 109.47844 * 180.02562 * 18 17 16 43 43 H 1.09000 * 109.47140 * 180.02562 * 19 18 17 44 44 H 1.09002 * 109.47497 * 60.00450 * 19 18 17 45 45 H 1.08010 * 119.99941 * 359.97438 * 23 22 20 46 46 H 1.08003 * 120.00059 * 180.25701 * 24 23 22 47 47 H 1.08004 * 120.00553 * 179.76788 * 25 24 23 48 48 H 1.08001 * 119.99986 * 179.97438 * 26 25 24 49 49 H 1.08002 * 119.99976 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4744 -6.1500 0.0005 13 8 1.7599 -7.3875 0.0017 14 6 2.5998 -8.5437 0.0018 15 1 3.5330 -8.3149 -0.5127 16 6 2.9004 -8.9554 1.4443 17 6 3.8002 -10.1929 1.4445 18 6 3.0893 -11.3405 0.7242 19 6 2.7886 -10.9287 -0.7183 20 6 1.8884 -9.6910 -0.7183 21 1 0.9551 -9.9199 -0.2038 22 6 1.5922 -9.2853 -2.1392 23 6 2.6263 -8.9412 -2.9896 24 6 2.3551 -8.5738 -4.2942 25 6 1.0490 -8.5410 -4.7457 26 6 0.0144 -8.8796 -3.8937 27 6 0.2861 -9.2520 -2.5905 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8904 31 1 2.8719 -3.6043 0.8904 32 1 2.8719 -3.6043 -0.8895 33 1 0.8532 -5.0451 -0.8886 34 1 0.8539 -5.0446 0.8913 35 1 3.1017 -6.0923 0.8902 36 1 3.1005 -6.0924 -0.8899 37 1 1.9672 -9.1843 1.9589 38 1 3.4072 -8.1382 1.9574 39 1 4.0140 -10.4866 2.4722 40 1 4.7334 -9.9638 0.9301 41 1 2.1561 -11.5697 1.2387 42 1 3.7300 -12.2223 0.7247 43 1 2.2818 -11.7460 -1.2313 44 1 3.7218 -10.6995 -1.2328 45 1 3.6465 -8.9626 -2.6355 46 1 3.1633 -8.3089 -4.9598 47 1 0.8366 -8.2503 -5.7640 48 1 -1.0061 -8.8535 -4.2463 49 1 -0.5221 -9.5170 -1.9250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689695.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:41 Heat of formation + Delta-G solvation = -83.673498 kcal Electronic energy + Delta-G solvation = -24505.271273 eV Core-core repulsion = 21201.519822 eV Total energy + Delta-G solvation = -3303.751451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06020 -39.29854 -37.75505 -36.24922 -34.31337 -33.58688 -31.75294 -31.21988 -30.26503 -29.19055 -26.57763 -24.39074 -23.66070 -23.51172 -22.97686 -21.91239 -21.70969 -20.48149 -18.45383 -17.86516 -17.60405 -16.90094 -16.58452 -16.35506 -16.06987 -15.67496 -15.34432 -15.07247 -14.67773 -14.61342 -14.30264 -14.16928 -14.07111 -13.99420 -13.61816 -13.42066 -13.21707 -12.93051 -12.86424 -12.53382 -12.34062 -12.26742 -12.24986 -12.12764 -11.90062 -11.75165 -11.53767 -11.49123 -11.36589 -11.30648 -11.13624 -11.04335 -10.57285 -10.32313 -9.76885 -9.51058 -8.20724 -6.32563 0.51319 0.54960 1.39404 1.40122 1.53688 2.40017 2.67532 2.92100 3.12095 3.58075 3.75525 3.99810 4.03173 4.09362 4.14784 4.17187 4.19442 4.24963 4.31654 4.33431 4.36888 4.44301 4.52978 4.55333 4.60654 4.64190 4.67995 4.72382 4.83700 4.91529 4.97183 5.05963 5.14365 5.16151 5.18248 5.21382 5.22918 5.24144 5.26886 5.31120 5.36887 5.50012 5.51866 5.62366 5.66767 5.73410 5.77335 5.84332 6.17426 6.23301 6.38541 6.84794 7.36884 8.91648 Molecular weight = 302.20amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.002941 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.893672 B = 9517.358136 C =10775.850655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.023 3.977 10 C -0.093 4.093 11 C -0.106 4.106 12 C 0.077 3.923 13 O -0.397 6.397 14 C 0.095 3.905 15 H 0.062 0.938 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.041 4.041 21 H 0.077 0.923 22 C -0.073 4.073 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.130 4.130 27 C -0.129 4.129 28 H 0.264 0.736 29 H -0.012 1.012 30 H -0.010 1.010 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.128 0.872 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 -26.836 -3.444 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.131 4.131 11 C -0.144 4.144 12 C 0.000 4.000 13 O -0.316 6.316 14 C 0.038 3.962 15 H 0.081 0.919 16 C -0.179 4.179 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.139 4.139 20 C -0.059 4.059 21 H 0.095 0.905 22 C -0.073 4.073 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.148 4.148 27 C -0.147 4.147 28 H 0.072 0.928 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.146 0.854 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.151 0.849 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.368 -26.748 -3.440 27.956 hybrid contribution -0.054 1.330 -0.017 1.331 sum 7.313 -25.418 -3.457 26.674 Atomic orbital electron populations 1.70122 1.07925 1.27743 1.51756 1.26052 0.95815 1.03593 0.94701 0.85349 0.79100 0.78479 0.77812 1.18373 1.20343 1.20278 1.21748 0.93630 0.92307 1.50432 0.91955 1.19013 0.94474 0.93276 0.94649 1.21347 0.98016 0.92835 1.00895 1.21421 0.98268 0.93143 1.01580 1.22426 0.94157 0.83202 1.00190 1.87906 1.34807 1.13794 1.95136 1.22241 0.93057 0.85099 0.95796 0.91949 1.22046 1.00759 0.98936 0.96145 1.21502 0.98191 0.93875 1.01541 1.21572 1.01083 0.98226 0.94684 1.21562 0.99146 0.95415 0.97817 1.20278 1.00102 0.94484 0.91068 0.90491 1.19894 0.93434 0.98493 0.95477 1.21147 0.99228 1.00267 0.93985 1.21407 0.97388 0.99578 0.96231 1.21413 0.93076 1.00471 1.00674 1.21399 1.00057 0.99298 0.94024 1.21247 0.96487 1.00718 0.96282 0.92760 0.99367 0.99165 0.92450 0.92760 0.93174 0.92596 0.92632 0.93245 0.91771 0.92116 0.90636 0.91341 0.91787 0.90032 0.90800 0.91083 0.85369 0.84571 0.84688 0.84928 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.29 21.45 0.28 -58.28 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -4.00 5.15 30.59 0.16 -3.85 16 11 C -0.11 -3.99 5.58 30.59 0.17 -3.82 16 12 C 0.08 2.33 5.75 71.98 0.41 2.74 16 13 O -0.40 -11.79 9.61 -148.98 -1.43 -13.22 16 14 C 0.10 2.10 1.86 30.59 0.06 2.16 16 15 H 0.06 1.31 7.02 -2.39 -0.02 1.30 16 16 C -0.14 -2.66 5.54 30.59 0.17 -2.49 16 17 C -0.11 -1.52 5.92 30.60 0.18 -1.34 16 18 C -0.12 -1.41 5.92 30.59 0.18 -1.22 16 19 C -0.10 -1.44 5.02 30.61 0.15 -1.28 16 20 C -0.04 -0.80 2.11 -11.52 -0.02 -0.82 16 21 H 0.08 1.61 7.88 -2.39 -0.02 1.59 16 22 C -0.07 -1.64 4.43 -19.87 -0.09 -1.73 16 23 C -0.13 -2.74 8.71 22.27 0.19 -2.55 16 24 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 25 C -0.14 -2.93 10.05 22.27 0.22 -2.71 16 26 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 27 C -0.13 -3.03 9.67 22.27 0.22 -2.82 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 1.54 7.87 -2.38 -0.02 1.53 16 36 H 0.05 1.43 8.09 -2.39 -0.02 1.42 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.21 7.87 -2.39 -0.02 1.19 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 0.94 7.40 -2.39 -0.02 0.92 16 45 H 0.13 2.30 7.10 -2.91 -0.02 2.28 16 46 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 47 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 48 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 49 H 0.12 2.63 7.95 -2.91 -0.02 2.61 16 Total: -1.00 -68.26 388.21 5.05 -63.21 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.87 Total: 16.04 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 3.30 Total: -54.86 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.28 Total: -58.28 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.43 Total: -13.22 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.26 5.05 -63.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689695.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.459 kcal (2) G-P(sol) polarization free energy of solvation -68.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds