Wall clock time and date at job start Tue Mar 31 2020 08:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47033 * 2 1 4 4 H 1.08995 * 109.47463 * 57.22054 * 3 2 1 5 5 C 1.50706 * 109.47093 * 177.22016 * 3 2 1 6 6 H 1.08000 * 119.99750 * 119.99616 * 5 3 2 7 7 C 1.37876 * 120.00014 * 300.00090 * 5 3 2 8 8 N 1.31511 * 120.00030 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99725 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47533 * 359.97438 * 9 7 5 11 11 H 1.48510 * 109.46730 * 119.99917 * 9 7 5 12 12 H 1.48497 * 109.46908 * 239.99419 * 9 7 5 13 13 N 1.46906 * 109.47155 * 297.21852 * 3 2 1 14 14 C 1.46848 * 111.00037 * 174.89887 * 13 3 2 15 15 C 1.53037 * 109.57364 * 185.80739 * 14 13 3 16 16 C 1.53119 * 109.27685 * 300.92070 * 15 14 13 17 17 H 1.09008 * 109.51962 * 297.61722 * 16 15 14 18 18 N 1.46904 * 109.52231 * 177.49879 * 16 15 14 19 19 C 1.48529 * 111.00464 * 53.94499 * 18 16 15 20 20 C 1.54933 * 103.23143 * 159.72158 * 19 18 16 21 21 C 1.54603 * 102.91889 * 322.58399 * 20 19 18 22 22 C 1.47907 * 110.99855 * 171.34170 * 18 16 15 23 23 C 1.53117 * 109.21821 * 57.55580 * 16 15 14 24 24 F 1.39901 * 109.49812 * 62.32169 * 23 16 15 25 25 F 1.39899 * 109.50664 * 182.39675 * 23 16 15 26 26 C 1.46852 * 110.99816 * 299.11251 * 13 3 2 27 27 H 1.09004 * 109.47504 * 55.15017 * 1 2 3 28 28 H 1.09000 * 109.47283 * 175.14659 * 1 2 3 29 29 H 1.08997 * 109.47391 * 295.14600 * 1 2 3 30 30 H 1.09001 * 109.47034 * 239.99656 * 2 1 3 31 31 H 1.08998 * 109.47164 * 119.99925 * 2 1 3 32 32 H 0.96996 * 119.99888 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.46203 * 305.85664 * 14 13 3 34 34 H 1.09000 * 109.45621 * 65.83800 * 14 13 3 35 35 H 1.08996 * 109.56162 * 180.94248 * 15 14 13 36 36 H 1.09001 * 109.45229 * 60.82392 * 15 14 13 37 37 H 1.09001 * 110.66794 * 278.16109 * 19 18 16 38 38 H 1.09005 * 110.66705 * 41.28392 * 19 18 16 39 39 H 1.08997 * 110.72678 * 204.22885 * 20 19 18 40 40 H 1.09003 * 110.87625 * 81.01066 * 20 19 18 41 41 H 1.08998 * 110.31178 * 263.03645 * 21 20 19 42 42 H 1.09001 * 110.38649 * 140.91400 * 21 20 19 43 43 H 1.08997 * 109.92058 * 333.50624 * 22 18 16 44 44 H 1.09002 * 109.91433 * 94.80140 * 22 18 16 45 45 H 1.08995 * 109.46256 * 54.14204 * 26 13 3 46 46 H 1.08998 * 109.45054 * 294.17057 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6365 1.9705 0.8640 5 6 3.5454 1.4431 0.0689 6 1 4.1220 1.8977 -0.7231 7 6 4.1865 0.8631 1.1429 8 7 3.4844 0.3098 2.1075 9 14 6.0526 0.8632 1.2279 10 1 6.6028 1.5428 0.0276 11 1 6.4923 1.5831 2.4502 12 1 6.5461 -0.5366 1.2735 13 7 1.6059 2.1153 -1.2317 14 6 1.9736 3.5369 -1.2124 15 6 1.3823 4.2361 -2.4385 16 6 1.9162 3.5673 -3.7083 17 1 2.9991 3.6834 -3.7533 18 7 1.3058 4.1954 -4.8877 19 6 1.5012 5.6676 -4.8680 20 6 1.2955 6.0725 -6.3493 21 6 1.9452 4.9011 -7.1212 22 6 1.9472 3.7202 -6.1329 23 6 1.5619 2.0780 -3.6806 24 9 0.1708 1.9289 -3.6748 25 9 2.0941 1.4501 -4.8118 26 6 2.1491 1.4423 -2.4184 27 1 -0.3634 0.5872 -0.8434 28 1 -0.3634 -1.0240 -0.0869 29 1 -0.3634 0.4367 0.9302 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9354 -0.0979 2.8632 33 1 1.5834 4.0007 -0.3065 34 1 3.0593 3.6313 -1.2302 35 1 1.6693 5.2876 -2.4328 36 1 0.2956 4.1548 -2.4139 37 1 0.7568 6.1460 -4.2315 38 1 2.5094 5.9175 -4.5373 39 1 1.8077 7.0095 -6.5677 40 1 0.2346 6.1499 -6.5871 41 1 2.9653 5.1564 -7.4079 42 1 1.3552 4.6545 -8.0040 43 1 2.9717 3.4095 -5.9277 44 1 1.3799 2.8873 -6.5483 45 1 1.8864 0.3849 -2.3884 46 1 3.2340 1.5468 -2.4302 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:55 Heat of formation + Delta-G solvation = -93.794848 kcal Electronic energy + Delta-G solvation = -27366.894132 eV Core-core repulsion = 23540.767007 eV Total energy + Delta-G solvation = -3826.127124 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.187 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.41642 -46.36579 -39.28065 -37.82527 -34.54460 -32.39694 -31.30858 -29.87789 -28.96921 -28.77479 -26.35326 -23.96763 -23.06901 -22.22279 -21.11843 -20.71851 -19.78420 -19.17643 -17.03609 -16.81926 -16.42864 -16.06756 -15.63525 -15.43874 -14.83119 -14.17046 -14.01538 -13.85913 -13.52621 -13.30999 -13.08006 -12.90162 -12.81015 -12.68997 -12.55159 -12.30270 -11.85412 -11.79737 -11.69541 -11.39351 -11.32607 -11.23472 -11.10702 -10.95548 -10.83112 -10.68013 -10.66441 -10.40820 -10.12529 -9.89353 -9.73949 -9.41303 -9.15693 -8.48424 -8.45252 -7.32157 -6.08094 -4.22224 3.19835 3.29209 3.31012 3.75321 4.11551 4.31683 4.43553 4.52990 4.66167 4.73576 4.85082 4.91381 5.14754 5.19255 5.22984 5.39596 5.42286 5.56536 5.63695 5.68250 5.70760 5.77808 5.89833 5.93970 5.98178 6.04140 6.09113 6.15343 6.32685 6.37752 6.46346 6.48524 6.64867 6.67455 6.80118 6.95797 7.05068 7.17016 7.23462 7.51172 7.66967 7.79135 8.02995 8.14974 8.31977 8.85816 9.46023 10.91521 Molecular weight = 302.19amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.004763 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.866274 B = 5876.865472 C = 6401.896255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.216 3.784 4 H 0.046 0.954 5 C -0.549 4.549 6 H 0.056 0.944 7 C 0.072 3.928 8 N -0.881 5.881 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.523 5.523 14 C 0.059 3.941 15 C -0.110 4.110 16 C 0.042 3.958 17 H 0.063 0.937 18 N -0.508 5.508 19 C 0.036 3.964 20 C -0.123 4.123 21 C -0.131 4.131 22 C 0.033 3.967 23 C 0.302 3.698 24 F -0.184 7.184 25 F -0.209 7.209 26 C 0.026 3.974 27 H 0.053 0.947 28 H 0.026 0.974 29 H 0.039 0.961 30 H 0.032 0.968 31 H 0.094 0.906 32 H 0.262 0.738 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 8.643 -12.879 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.064 0.936 5 C -0.588 4.588 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.519 5.519 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.248 5.248 14 C -0.070 4.070 15 C -0.148 4.148 16 C -0.068 4.068 17 H 0.081 0.919 18 N -0.232 5.232 19 C -0.091 4.091 20 C -0.161 4.161 21 C -0.169 4.169 22 C -0.095 4.095 23 C 0.265 3.735 24 F -0.165 7.165 25 F -0.190 7.190 26 C -0.104 4.104 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.208 8.351 -12.725 15.792 hybrid contribution 2.887 0.008 0.029 2.887 sum -1.321 8.359 -12.696 15.258 Atomic orbital electron populations 1.21743 0.98548 0.98772 1.00881 1.21644 0.92529 0.98910 1.02077 1.19320 0.92864 0.91183 0.85546 0.93614 1.21710 0.92495 1.38064 1.06527 0.92621 1.24882 0.97986 0.94821 0.95464 1.69873 1.34985 1.37346 1.09728 0.86626 0.86099 0.77839 0.77953 1.20006 1.20932 1.20905 1.62383 1.58260 1.01197 1.02946 1.21959 0.98514 0.89862 0.96712 1.21739 1.02700 0.98463 0.91865 1.22817 0.98017 0.92913 0.93036 0.91876 1.64811 1.53057 1.04473 1.00908 1.23235 1.00253 0.88389 0.97251 1.22468 1.01524 0.97630 0.94445 1.22423 1.00823 0.95123 0.98569 1.23009 0.98127 0.98032 0.90291 1.21157 0.76193 0.91733 0.84433 1.92979 1.30286 1.96479 1.96709 1.92932 1.86436 1.84713 1.54968 1.22812 0.98778 1.00303 0.88489 0.92793 0.95510 0.94193 0.94897 0.88791 0.92792 0.90400 0.94109 0.91171 0.89722 0.89637 0.93652 0.91191 0.90697 0.91697 0.91075 0.93442 0.89934 0.88530 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.84 37.15 0.37 -2.51 16 2 C -0.11 -2.60 5.00 -26.74 -0.13 -2.74 16 3 C 0.22 5.06 1.77 -68.86 -0.12 4.94 16 4 H 0.05 1.18 8.08 -51.93 -0.42 0.77 16 5 C -0.55 -13.88 7.19 -34.44 -0.25 -14.13 16 6 H 0.06 1.41 5.84 -52.49 -0.31 1.11 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -23.85 11.30 55.43 0.63 -23.22 16 9 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.52 -10.53 3.85 -228.08 -0.88 -11.41 16 14 C 0.06 1.05 5.12 -3.83 -0.02 1.03 16 15 C -0.11 -1.64 4.88 -26.65 -0.13 -1.77 16 16 C 0.04 0.64 1.49 -67.59 -0.10 0.54 16 17 H 0.06 0.98 7.85 -51.92 -0.41 0.57 16 18 N -0.51 -7.05 5.00 -222.35 -1.11 -8.16 16 19 C 0.04 0.40 5.17 -1.90 -0.01 0.39 16 20 C -0.12 -1.14 7.06 -24.87 -0.18 -1.32 16 21 C -0.13 -1.29 6.93 -25.37 -0.18 -1.47 16 22 C 0.03 0.42 5.11 -2.75 -0.01 0.41 16 23 C 0.30 5.31 1.76 -26.65 -0.05 5.27 16 24 F -0.18 -3.52 16.49 2.25 0.04 -3.49 16 25 F -0.21 -3.66 14.56 2.25 0.03 -3.63 16 26 C 0.03 0.51 4.29 -3.83 -0.02 0.49 16 27 H 0.05 1.09 7.55 -51.93 -0.39 0.69 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.75 6.16 -51.93 -0.32 0.43 16 31 H 0.09 2.41 6.00 -51.93 -0.31 2.10 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.04 0.78 6.97 -51.93 -0.36 0.41 16 35 H 0.07 0.89 6.98 -51.93 -0.36 0.53 16 36 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 37 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 38 H 0.05 0.49 8.02 -51.93 -0.42 0.08 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.63 7.24 -51.93 -0.38 0.25 16 44 H 0.08 1.13 7.62 -51.93 -0.40 0.74 16 45 H 0.10 1.96 5.98 -51.93 -0.31 1.65 16 46 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -26.56 344.71 -9.67 -36.22 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.63 Total: 2.20 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.92 Total: -9.08 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -1.36 Total: -42.80 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.56 -9.67 -36.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.572 kcal (2) G-P(sol) polarization free energy of solvation -26.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds