Wall clock time and date at job start Tue Mar 31 2020 08:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46984 * 2 1 4 4 C 1.53003 * 109.46935 * 119.99945 * 2 1 3 5 5 N 1.46894 * 109.46987 * 61.73431 * 4 2 1 6 6 C 1.46853 * 111.00006 * 174.73903 * 5 4 2 7 7 C 1.53032 * 109.51547 * 174.15207 * 6 5 4 8 8 C 1.53110 * 109.27963 * 59.18369 * 7 6 5 9 9 N 1.46503 * 109.52627 * 182.37263 * 8 7 6 10 10 C 1.38225 * 120.00771 * 207.96122 * 9 8 7 11 11 C 1.38995 * 119.99491 * 6.25043 * 10 9 8 12 12 H 1.07993 * 120.00279 * 314.22326 * 11 10 9 13 13 C 1.40821 * 119.99701 * 134.22095 * 11 10 9 14 14 N 1.30337 * 119.99952 * 158.89371 * 13 11 10 15 15 Si 1.86801 * 120.00119 * 338.89370 * 13 11 10 16 16 H 1.48508 * 109.47136 * 96.43740 * 15 13 11 17 17 H 1.48495 * 109.46986 * 216.43684 * 15 13 11 18 18 H 1.48500 * 109.47312 * 336.43959 * 15 13 11 19 19 C 1.41151 * 120.00683 * 186.25503 * 10 9 8 20 20 C 1.43192 * 120.00186 * 172.52558 * 19 10 9 21 21 N 8.67613 * 125.91389 * 246.07139 * 5 1 2 22 22 C 1.43199 * 119.99745 * 352.52387 * 19 10 9 23 23 N 9.50702 * 74.58926 * 169.75941 * 2 1 3 24 24 C 1.53115 * 109.16457 * 302.34393 * 8 7 6 25 25 C 1.46848 * 110.99886 * 50.53424 * 5 4 2 26 26 H 1.09000 * 109.47072 * 299.99983 * 1 2 3 27 27 H 1.08996 * 109.47186 * 60.00097 * 1 2 3 28 28 H 1.09002 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47072 * 240.00016 * 2 1 3 30 30 H 1.09004 * 109.46673 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46775 * 299.99694 * 3 2 1 32 32 H 1.08991 * 109.47184 * 59.99844 * 3 2 1 33 33 H 1.08994 * 109.47143 * 301.72957 * 4 2 1 34 34 H 1.08996 * 109.46707 * 181.73281 * 4 2 1 35 35 H 1.09004 * 109.46031 * 54.14214 * 6 5 4 36 36 H 1.08994 * 109.46051 * 294.16368 * 6 5 4 37 37 H 1.09001 * 109.49967 * 179.12779 * 7 6 5 38 38 H 1.09000 * 109.50428 * 299.23877 * 7 6 5 39 39 H 1.09007 * 109.52552 * 62.24867 * 8 7 6 40 40 H 0.97008 * 119.99177 * 27.96428 * 9 8 7 41 41 H 0.97001 * 119.99917 * 180.02562 * 14 13 11 42 42 H 1.09001 * 109.50760 * 177.59252 * 24 8 7 43 43 H 1.08997 * 109.50500 * 297.71733 * 24 8 7 44 44 H 1.08995 * 109.46670 * 65.82958 * 25 5 4 45 45 H 1.09003 * 109.44670 * 305.85610 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.5848 -2.1177 1.2285 6 6 2.1583 -2.8749 2.3485 7 6 1.5513 -4.2794 2.3801 8 6 1.8476 -4.9881 1.0556 9 7 1.2206 -6.3122 1.0578 10 6 1.7683 -7.3376 0.3101 11 6 2.9829 -7.1519 -0.3395 12 1 3.1613 -6.2481 -0.9031 13 6 3.9811 -8.1422 -0.2627 14 7 4.9239 -8.1884 -1.1615 15 14 3.9540 -9.3898 1.1274 16 1 3.2944 -10.6361 0.6612 17 1 5.3457 -9.6935 1.5471 18 1 3.2003 -8.8318 2.2788 19 6 1.0940 -8.5733 0.2060 20 6 1.5757 -9.5783 -0.6931 21 7 1.9578 -10.3757 -1.4065 22 6 -0.0716 -8.8220 0.9997 23 7 -0.9963 -9.0192 1.6294 24 6 1.2823 -4.1548 -0.0978 25 6 1.8971 -2.7539 -0.0577 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6516 -0.2257 2.1389 34 1 3.1295 -0.6944 1.2649 35 1 1.9368 -2.3624 3.2846 36 1 3.2383 -2.9488 2.2216 37 1 1.9885 -4.8463 3.2020 38 1 0.4729 -4.2066 2.5207 39 1 2.9254 -5.0957 0.9332 40 1 0.4210 -6.4692 1.5841 41 1 5.6113 -8.8708 -1.1088 42 1 1.5274 -4.6327 -1.0463 43 1 0.1997 -4.0800 0.0037 44 1 2.9784 -2.8283 -0.1730 45 1 1.4858 -2.1533 -0.8690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258003823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:45 Heat of formation + Delta-G solvation = 33.960287 kcal Electronic energy + Delta-G solvation = -24739.991873 eV Core-core repulsion = 21370.093814 eV Total energy + Delta-G solvation = -3369.898059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.56435 -39.03802 -37.35091 -36.70901 -36.08854 -35.11818 -33.18448 -31.75039 -30.52760 -28.68419 -27.88134 -26.61435 -24.22671 -23.81650 -22.37652 -21.14605 -20.35436 -20.30983 -19.27911 -17.77060 -17.23275 -16.97143 -16.05706 -15.92728 -15.86602 -15.13711 -15.04045 -14.93890 -14.66095 -14.55541 -14.36285 -14.05796 -13.90567 -13.71272 -13.54158 -13.44144 -13.22003 -13.10536 -12.95558 -12.86955 -12.78111 -12.59322 -12.49382 -12.13851 -12.06195 -12.04907 -11.85926 -11.75083 -11.52143 -11.30262 -11.27880 -11.11611 -10.63804 -9.14509 -9.08734 -8.39594 -7.06626 0.78689 1.33674 1.37865 1.50247 1.95417 2.09777 2.19802 2.28956 2.56551 2.80421 3.02966 3.31729 3.76802 3.85741 3.92622 4.10202 4.11211 4.26070 4.33381 4.37029 4.45797 4.54424 4.65642 4.69109 4.72262 4.82483 4.86296 4.88127 4.92230 4.98188 5.01564 5.10519 5.12966 5.17110 5.22959 5.29932 5.34850 5.37308 5.51558 5.53065 5.60809 5.70410 6.11579 6.23010 6.26617 6.29610 6.73288 6.96812 7.08988 7.30700 7.91955 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.003855 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.535324 B = 7261.720573 C = 7768.405461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 C -0.143 4.143 4 C 0.062 3.938 5 N -0.540 5.540 6 C 0.064 3.936 7 C -0.117 4.117 8 C 0.147 3.853 9 N -0.714 5.714 10 C 0.426 3.574 11 C -0.466 4.466 12 H 0.107 0.893 13 C 0.095 3.905 14 N -0.784 5.784 15 Si 0.913 3.087 16 H -0.272 1.272 17 H -0.268 1.268 18 H -0.234 1.234 19 C -0.331 4.331 20 C 0.321 3.679 21 N -0.546 5.546 22 C 0.312 3.688 23 N -0.537 5.537 24 C -0.123 4.123 25 C 0.060 3.940 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.394 0.606 41 H 0.300 0.700 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 20.673 6.203 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.065 4.065 5 N -0.264 5.264 6 C -0.064 4.064 7 C -0.155 4.155 8 C 0.043 3.957 9 N -0.336 5.336 10 C 0.307 3.693 11 C -0.498 4.498 12 H 0.125 0.875 13 C -0.132 4.132 14 N -0.406 5.406 15 Si 0.735 3.265 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.156 1.156 19 C -0.352 4.352 20 C 0.014 3.986 21 N -0.229 5.229 22 C 0.006 3.994 23 N -0.220 5.220 24 C -0.162 4.162 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.099 19.287 6.004 20.230 hybrid contribution 1.004 -0.726 0.089 1.242 sum -0.096 18.561 6.093 19.536 Atomic orbital electron populations 1.21689 0.94543 1.01839 1.01166 1.21250 0.96765 0.96358 0.97480 1.21783 1.00886 0.95126 1.02297 1.22193 0.97306 0.87818 0.99226 1.62013 1.59631 1.02230 1.02567 1.22000 0.96413 0.93139 0.94882 1.21805 1.02345 0.95277 0.96101 1.21094 0.98335 0.80605 0.95690 1.45244 1.31472 1.10078 1.46758 1.16986 0.87450 0.82533 0.82325 1.18940 0.96823 1.05568 1.28487 0.87530 1.26413 0.93986 0.96351 0.96473 1.69425 1.11299 1.30622 1.29245 0.86220 0.78772 0.80399 0.81098 1.19768 1.19386 1.15646 1.12769 1.04992 0.98461 1.18980 1.24743 0.91344 0.91378 0.91147 1.81028 1.12797 1.12779 1.16265 1.25201 0.91226 0.92116 0.90881 1.81092 1.14870 1.09890 1.16177 1.21971 1.01017 0.94694 0.98511 1.22076 0.97864 0.94344 0.92529 0.92755 0.93106 0.92805 0.91539 0.92706 0.92213 0.92112 0.90030 0.95064 0.88976 0.94726 0.90399 0.90715 0.90035 0.77144 0.88866 0.92389 0.91397 0.95310 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.91 71.98 0.64 -1.44 16 2 C -0.10 -1.47 2.42 -10.79 -0.03 -1.50 16 3 C -0.14 -1.72 9.19 71.98 0.66 -1.05 16 4 C 0.06 0.98 4.58 86.31 0.40 1.37 16 5 N -0.54 -10.20 4.10 -896.39 -3.68 -13.87 16 6 C 0.06 1.17 5.46 86.32 0.47 1.65 16 7 C -0.12 -2.49 5.58 30.64 0.17 -2.32 16 8 C 0.15 3.99 2.35 45.07 0.11 4.10 16 9 N -0.71 -23.24 5.11 -317.80 -1.62 -24.86 16 10 C 0.43 17.08 5.50 39.03 0.21 17.30 16 11 C -0.47 -20.14 7.55 23.08 0.17 -19.96 16 12 H 0.11 4.68 7.26 -2.91 -0.02 4.66 16 13 C 0.09 4.33 4.54 85.55 0.39 4.71 16 14 N -0.78 -37.26 13.90 21.98 0.31 -36.95 16 15 Si 0.91 38.97 24.69 68.60 1.69 40.66 16 16 H -0.27 -12.93 5.93 99.48 0.59 -12.34 16 17 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.23 -9.50 7.11 99.48 0.71 -8.80 16 19 C -0.33 -14.62 4.43 -20.07 -0.09 -14.71 16 20 C 0.32 15.84 10.45 88.33 0.92 16.77 16 21 N -0.55 -28.53 17.90 19.00 0.34 -28.19 16 22 C 0.31 13.54 14.11 88.33 1.25 14.79 16 23 N -0.54 -23.62 18.54 19.00 0.35 -23.27 16 24 C -0.12 -3.14 5.70 30.64 0.17 -2.96 16 25 C 0.06 1.29 4.80 86.33 0.41 1.70 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.99 7.30 -2.39 -0.02 0.98 16 29 H 0.07 1.09 6.08 -2.39 -0.01 1.07 16 30 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.03 0.50 8.13 -2.39 -0.02 0.48 16 35 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 36 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 2.47 6.81 -2.38 -0.02 2.46 16 40 H 0.39 12.35 7.48 -92.70 -0.69 11.65 16 41 H 0.30 13.34 8.29 -92.71 -0.77 12.57 16 42 H 0.06 1.69 7.77 -2.39 -0.02 1.68 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 1.75 5.51 -2.39 -0.01 1.74 16 Total: -1.00 -53.30 362.26 3.45 -49.85 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.19 Total: 18.19 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 5.87 Total: 18.43 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -4.30 Total: -127.14 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.69 Total: 40.66 kcal Total: -53.30 3.45 -49.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258003823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.814 kcal (2) G-P(sol) polarization free energy of solvation -53.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds